RchiOBHm_Chr6g0249261

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000686
Physical Location & Seq
Reverse (-)
5138446 .. 5138952
507 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22347

Sequence Viewer

Length: 141 bp
ATGAGCTGCACTGAAGCATTAAAAGCTGGGTTGCGCGGAAAAGCCTTAAAAATTGCTCACTATTATGGTGACTTACTTTGGGAATCAGTTGAGGGGGCCTTATGTGCCAAATGCAGGTTTCTTAGAAGATGCTGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

46

Amino Acids

5.18

Weight (kDa)

8.99

Isoelectric Point (pI)

65.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 105
AccII CGCG 1 cut(s) 36
AciI CCGC 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 114
AluBI AGCT 2 cut(s) 6, 26
AluI AGCT 2 cut(s) 6, 26
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 6
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 80
BfuAI ACCTGC 1 cut(s) 105
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 97
BmsI GCATC 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 114
BseYI CCCAGC 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 114
BsnI GGCC 1 cut(s) 98
BspACI CCGC 1 cut(s) 36
BspANI GGCC 1 cut(s) 98
BspFNI CGCG 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 122
BstFNI CGCG 1 cut(s) 36
BstHHI GCGC 1 cut(s) 36
BstMWI GCNNNNNNNGC 2 cut(s) 23, 104
BstUI CGCG 1 cut(s) 36
BsuRI GGCC 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 9
BveI ACCTGC 1 cut(s) 105
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 96
CviJI RGCY 4 cut(s) 6, 26, 44, 98
CviKI_1 RGCY 4 cut(s) 6, 26, 44, 98
DdeI CTNAG 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 96
FaiI YATR 2 cut(s) 66, 103
Fnu4HI GCNGC 1 cut(s) 7
Fsp4HI GCNGC 1 cut(s) 7
GlaI GCGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 7
GsaI CCCAGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 98
HhaI GCGC 1 cut(s) 36
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 1 cut(s) 83
HphI GGTGA 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 9, 114
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 104
HpyF3I CTNAG 1 cut(s) 122
HspAI GCGC 1 cut(s) 34
LpnPI CCDG 2 cut(s) 12, 100
LweI GCATC 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 68
MboII GAAGA 1 cut(s) 138
MluCI AATT 1 cut(s) 51
MnlI CCTC 1 cut(s) 85
MseI TTAA 2 cut(s) 20, 47
MslI CAYNNNNRTG 1 cut(s) 63
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 2 cut(s) 23, 104
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 63
SaqAI TTAA 2 cut(s) 20, 47
SatI GCNGC 1 cut(s) 7
Sau96I GGNCC 1 cut(s) 96
SetI ASST 3 cut(s) 8, 28, 119
SfaNI GCATC 1 cut(s) 119
SgeI CNNG 3 cut(s) 39, 47, 127
SmiMI CAYNNNNRTG 1 cut(s) 63
Sse9I AATT 1 cut(s) 51
SsiI CCGC 1 cut(s) 36
TasI AATT 1 cut(s) 51
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 2 cut(s) 20, 47
Tru9I TTAA 2 cut(s) 20, 47
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 1 cut(s) 6
Tsp45I GTSAC 1 cut(s) 68
TspRI CASTG 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.