Rorug05G0496000

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000686
Physical Location & Seq
Reverse (-)
67792681 .. 67793076
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0496000.1

Sequence Viewer

Length: 396 bp
ATGCCTGATGGTATGAAGAAGTACAAAGTAGCTAGGTTCAACAAGGATGGTGGGACAATTTGGCTAGATGGTCTAGACCCTGATAAGATTGCATGGACAGAGTCTGGGAACATAGTATGGGATCTAGGGTACAGGGAGAAGCCAATATCGTACTACTTCAAGCTGCCTAGGACACTCTGCAATGAGGGTTGGATGCCGATTAGGAATGATACTGATGCACTTGAGATGGTGAAGACAAGGCAGATTAGTGTCTTCATAACTGGTGGTGGTAGAAGGAGAAAAAAGGAGGCTGAGGAGGAGGATTTGAGACCTGTTGATCCAGATTGGGAGAATCCTTTGAATAGGATGACAGCAACAGAAACAGCAAAGGCTCAACAAGATGCCAACATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

131

Amino Acids

15.17

Weight (kDa)

5.58

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 17 - 79 2.6e-06 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 129, 311
AfaI GTAC 3 cut(s) 23, 131, 152
AgsI TTSAA 3 cut(s) 40, 160, 340
AluBI AGCT 2 cut(s) 32, 163
AluI AGCT 2 cut(s) 32, 163
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 2 cut(s) 129, 311
AlwNI CAGNNNCTG 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 163
AspA2I CCTAGG 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 241
AvrII CCTAGG 1 cut(s) 167
BbsI GAAGAC 2 cut(s) 239, 244
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 150
BccI CCATC 4 cut(s) 2, 41, 62, 220
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 5 cut(s) 33, 65, 74, 125, 168
BisI GCNGC 1 cut(s) 164
BlnI CCTAGG 1 cut(s) 167
BlsI GCNGC 1 cut(s) 165
BmsI GCATC 3 cut(s) 183, 205, 370
BpiI GAAGAC 2 cut(s) 239, 244
Bpu10I CCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 3 cut(s) 52, 198, 351
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 2 cut(s) 308, 311
BseXI GCAGC 1 cut(s) 150
BslFI GGGAC 1 cut(s) 67
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 67
Bso31I GGTCTC 1 cut(s) 301
Bsp143I GATC 2 cut(s) 121, 316
BspCNI CTCAG 1 cut(s) 283
BspPI GGATC 2 cut(s) 129, 311
BspTNI GGTCTC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 187
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 2 cut(s) 121, 316
BssT1I CCWWGG 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 3 cut(s) 52, 198, 351
BstKTI GATC 2 cut(s) 124, 319
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 2 cut(s) 121, 316
BstV1I GCAGC 1 cut(s) 150
BstV2I GAAGAC 2 cut(s) 239, 244
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BtsCI GGATG 3 cut(s) 52, 198, 351
CaiI CAGNNNCTG 1 cut(s) 104
Csp6I GTAC 3 cut(s) 22, 130, 151
CspCI CAANNNNNGTGG 2 cut(s) 31, 66
CviAII CATG 1 cut(s) 93
CviJI RGCY 6 cut(s) 32, 64, 142, 163, 290, 371
CviKI_1 RGCY 6 cut(s) 32, 64, 142, 163, 290, 371
CviQI GTAC 3 cut(s) 22, 130, 151
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 123, 318
DpnII GATC 2 cut(s) 121, 316
Eco130I CCWWGG 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 1 cut(s) 96
FaiI YATR 5 cut(s) 14, 94, 113, 118, 257
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 92
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 3 cut(s) 59, 205, 358
Fsp4HI GCNGC 1 cut(s) 164
FspBI CTAG 5 cut(s) 33, 65, 74, 125, 168
GluI GCNGC 1 cut(s) 164
Hin1II CATG 1 cut(s) 96
HinfI GANTC 2 cut(s) 101, 331
HphI GGTGA 1 cut(s) 241
Hpy188III TCNNGA 2 cut(s) 74, 320
HpyAV CCTTC 1 cut(s) 267
HpyCH4V TGCA 3 cut(s) 92, 180, 218
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 1 cut(s) 96
Kzo9I GATC 2 cut(s) 121, 316
LpnPI CCDG 7 cut(s) 18, 90, 93, 118, 246, 324, 333
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 3 cut(s) 183, 205, 370
MaeI CTAG 5 cut(s) 33, 65, 74, 125, 168
MalI GATC 2 cut(s) 123, 318
MboI GATC 2 cut(s) 121, 316
MboII GAAGA 3 cut(s) 28, 244, 244
MflI RGATCY 1 cut(s) 121
MluCI AATT 1 cut(s) 57
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 5 cut(s) 178, 280, 286, 289, 292
NdeII GATC 2 cut(s) 121, 316
NlaIII CATG 1 cut(s) 96
PfeI GAWTC 1 cut(s) 331
PflFI GACNNNGTC 1 cut(s) 100
PkrI GCNGC 1 cut(s) 165
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 104
PsuI RGATCY 1 cut(s) 121
PsyI GACNNNGTC 1 cut(s) 100
RsaI GTAC 3 cut(s) 23, 131, 152
RsaNI GTAC 3 cut(s) 22, 130, 151
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 2 cut(s) 121, 316
SchI GAGTC 1 cut(s) 110
SetI ASST 4 cut(s) 34, 38, 165, 313
SfaNI GCATC 3 cut(s) 183, 205, 370
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 1 cut(s) 57
SspMI CTAG 5 cut(s) 33, 65, 74, 125, 168
StyI CCWWGG 1 cut(s) 167
TasI AATT 1 cut(s) 57
TatI WGTACW 1 cut(s) 21
TfiI GAWTC 1 cut(s) 331
TseI GCWGC 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 29, 244
Tth111I GACNNNGTC 1 cut(s) 100
XbaI TCTAGA 1 cut(s) 73
XmaJI CCTAGG 1 cut(s) 167
XspI CTAG 5 cut(s) 33, 65, 74, 125, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.