Rh6AG000300

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000686
Physical Location & Seq
Reverse (-)
146436 .. 146748
313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG000300.1

Sequence Viewer

Length: 198 bp
ATGAGCTGCACTGAAGCATTAAAAGCTGGGTTGCGCGGAAAAGCCTTAAAAATTGCTCACTATTATGGGAATCAGTTGAGGGGGCCTTATGTGCCAAATGCAGGTTTCTTAGAAGATGCTGTTTTTGAGGATCCTACCTTGTCATCAGCTCAAATTTCTGATTCATATAATGGTGCAAATGATGGATCACATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

65

Amino Acids

6.93

Weight (kDa)

5.08

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 92
AccII CGCG 1 cut(s) 36
AciI CCGC 1 cut(s) 36
AclWI GGATC 3 cut(s) 125, 138, 193
AcsI RAATTY 1 cut(s) 153
AcuI CTGAAG 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 101
AluBI AGCT 3 cut(s) 6, 26, 149
AluI AGCT 3 cut(s) 6, 26, 149
AlwI GGATC 3 cut(s) 125, 138, 193
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 153
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 83
BamHI GGATCC 1 cut(s) 130
BccI CCATC 1 cut(s) 176
BfuAI ACCTGC 1 cut(s) 92
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 2 cut(s) 84, 132
BmsI GCATC 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 101
BseYI CCCAGC 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 101
BsnI GGCC 1 cut(s) 85
Bsp143I GATC 2 cut(s) 130, 185
BspACI CCGC 1 cut(s) 36
BspANI GGCC 1 cut(s) 85
BspFNI CGCG 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 84, 132
BspMI ACCTGC 1 cut(s) 92
BspPI GGATC 3 cut(s) 125, 138, 193
BssMI GATC 2 cut(s) 130, 185
BstDEI CTNAG 1 cut(s) 109
BstFNI CGCG 1 cut(s) 36
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 2 cut(s) 133, 188
BstMBI GATC 2 cut(s) 130, 185
BstMWI GCNNNNNNNGC 2 cut(s) 23, 91
BstUI CGCG 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 9
BveI ACCTGC 1 cut(s) 92
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 83
CviAII CATG 1 cut(s) 191
CviJI RGCY 5 cut(s) 6, 26, 44, 85, 149
CviKI_1 RGCY 5 cut(s) 6, 26, 44, 85, 149
DdeI CTNAG 1 cut(s) 109
DpnI GATC 2 cut(s) 132, 187
DpnII GATC 2 cut(s) 130, 185
Eco57I CTGAAG 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 83
FaeI CATG 1 cut(s) 194
FaiI YATR 5 cut(s) 66, 90, 166, 168, 192
FatI CATG 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 7
Fsp4HI GCNGC 1 cut(s) 7
GlaI GCGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 7
GsaI CCCAGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 85
HhaI GCGC 1 cut(s) 36
Hin1II CATG 1 cut(s) 194
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 2 cut(s) 70, 161
Hpy188I TCNGA 1 cut(s) 160
HpyCH4V TGCA 3 cut(s) 9, 101, 176
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 91
HpyF3I CTNAG 1 cut(s) 109
Hsp92II CATG 1 cut(s) 194
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 2 cut(s) 130, 185
LpnPI CCDG 2 cut(s) 12, 87
LweI GCATC 1 cut(s) 106
MalI GATC 2 cut(s) 132, 187
MboI GATC 2 cut(s) 130, 185
MboII GAAGA 1 cut(s) 125
MflI RGATCY 1 cut(s) 130
MluCI AATT 2 cut(s) 51, 153
MnlI CCTC 2 cut(s) 72, 121
MseI TTAA 3 cut(s) 20, 47, 196
MslI CAYNNNNRTG 1 cut(s) 63
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 2 cut(s) 23, 91
NdeII GATC 2 cut(s) 130, 185
NlaIII CATG 1 cut(s) 194
NlaIV GGNNCC 2 cut(s) 84, 132
PfeI GAWTC 2 cut(s) 70, 161
PkrI GCNGC 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 84, 132
PspPI GGNCC 1 cut(s) 83
PsuI RGATCY 1 cut(s) 130
RseI CAYNNNNRTG 1 cut(s) 63
SaqAI TTAA 3 cut(s) 20, 47, 196
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 2 cut(s) 130, 185
Sau96I GGNCC 1 cut(s) 83
SetI ASST 5 cut(s) 8, 28, 106, 140, 151
SfaNI GCATC 1 cut(s) 106
SgeI CNNG 4 cut(s) 39, 47, 114, 151
SmiMI CAYNNNNRTG 1 cut(s) 63
Sse9I AATT 2 cut(s) 51, 153
SsiI CCGC 1 cut(s) 36
TasI AATT 2 cut(s) 51, 153
TfiI GAWTC 2 cut(s) 70, 161
Tru1I TTAA 3 cut(s) 20, 47, 196
Tru9I TTAA 3 cut(s) 20, 47, 196
TscAI CASTG 1 cut(s) 16
TseI GCWGC 1 cut(s) 6
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 1 cut(s) 16
XapI RAATTY 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.