RchiOBHm_Chr6g0250321

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000686
Physical Location & Seq
Reverse (-)
5878111 .. 5880114
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22439

Sequence Viewer

Length: 309 bp
ATGCAAGCCCATCACATTGTGACAAGGGGAAATGACTCAGTTGTTCGTAAAGGTGGTTTGAAAACAGTCCAGATAATGACAGAAAGGCGGCAAGATAATAAGAAAATGACCAAGTTATCAGGACTGGAAACATTTTTAGTGGATCCAGAAGCTTTGGCATCAGAGCTACAAAAGAAGTTCGCTTGTAGTGCAACTGTGGCAGAACTACAAGGTGAGAAGGGGCTGGAGGTTCTGGTTCAAGGTGGAGTGATTGAGAATCTAGCAAAACACTTGATTGACACAATATGGGATCCCAAAGAGATACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

102

Amino Acids

11.32

Weight (kDa)

6.91

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 21 - 93 2.5e-21 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 88
AclWI GGATC 4 cut(s) 137, 150, 284, 297
AdeI CACNNNGTG 1 cut(s) 19
AgsI TTSAA 2 cut(s) 61, 239
AluBI AGCT 2 cut(s) 152, 166
AluI AGCT 2 cut(s) 152, 166
AlwI GGATC 4 cut(s) 137, 150, 284, 297
AsuHPI GGTGA 1 cut(s) 224
BamHI GGATCC 2 cut(s) 142, 289
BccI CCATC 1 cut(s) 18
BfaI CTAG 1 cut(s) 260
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 144, 291
BmsI GCATC 1 cut(s) 167
BpmI CTGGAG 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 129
Bsp143I GATC 2 cut(s) 142, 289
BspACI CCGC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 50
BspLI GGNNCC 2 cut(s) 144, 291
BspPI GGATC 4 cut(s) 137, 150, 284, 297
BsrI ACTGG 1 cut(s) 129
BssMI GATC 2 cut(s) 142, 289
Bst4CI ACNGT 2 cut(s) 67, 196
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 37
BstKTI GATC 2 cut(s) 145, 292
BstMBI GATC 2 cut(s) 142, 289
BstMWI GCNNNNNNNGC 2 cut(s) 188, 197
BstX2I RGATCY 2 cut(s) 142, 289
BstYI RGATCY 2 cut(s) 142, 289
Cac8I GCNNGC 1 cut(s) 6
CviJI RGCY 4 cut(s) 8, 152, 166, 223
CviKI_1 RGCY 4 cut(s) 8, 152, 166, 223
DdeI CTNAG 1 cut(s) 37
DpnI GATC 2 cut(s) 144, 291
DpnII GATC 2 cut(s) 142, 289
DraIII CACNNNGTG 1 cut(s) 19
FaiI YATR 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 260
GluI GCNGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 245
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 2 cut(s) 35, 256
HphI GGTGA 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 3 cut(s) 70, 120, 146
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 2 cut(s) 67, 196
HpyCH4V TGCA 2 cut(s) 4, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 197
HpyF3I CTNAG 1 cut(s) 37
Kzo9I GATC 2 cut(s) 142, 289
LpnPI CCDG 6 cut(s) 83, 105, 110, 159, 209, 218
LweI GCATC 1 cut(s) 167
MaeI CTAG 1 cut(s) 260
MaeIII GTNAC 1 cut(s) 19
MalI GATC 2 cut(s) 144, 291
MboI GATC 2 cut(s) 142, 289
MflI RGATCY 2 cut(s) 142, 289
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 1 cut(s) 220
MwoI GCNNNNNNNGC 2 cut(s) 188, 197
NdeII GATC 2 cut(s) 142, 289
NlaIV GGNNCC 2 cut(s) 144, 291
NmuCI GTSAC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 144, 291
PsuI RGATCY 2 cut(s) 142, 289
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 142, 289
SchI GAGTC 1 cut(s) 29
SetI ASST 6 cut(s) 55, 154, 168, 214, 231, 244
SfaNI GCATC 1 cut(s) 167
SsiI CCGC 1 cut(s) 88
SspMI CTAG 1 cut(s) 260
TaaI ACNGT 2 cut(s) 67, 196
TauI GCSGC 1 cut(s) 91
TfiI GAWTC 1 cut(s) 256
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.