RchiOBHm_Chr6g0249701

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000686
Physical Location & Seq
Reverse (-)
5617632 .. 5620757
3126 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22386

Sequence Viewer

Length: 1149 bp
ATGGGGCAACATGTTGATGTTGCTGATGTGCAGTCTGAACCAAGTTCTGCTTCAGTTGCACCGATTGATGCTAGGAATGAGATCGCTGAGGAAGTAACTGCAAATGTAGGTGATCTGAAGCTAACAGATGATGATTCCACCGATCAGTCAACTGGGGGGGATCAACATCCTCCTTCCACCGAGGATGTGGACATGCTTTTGGAAAAGTGTCTTTTGCAAGCATTGCATACAACTGTCAAAGACAAAGACCTTCCCATACCCGGAAGCACTCTATGGTCAAACTATGTTTTACCTTGTAGGCCTTCAGGCATCACACTAGACATCAAGAAATCATCATACAAGAAATTATCAAAGTGGTTACAAGCTAAATGTTCTACAGGATTGATTAGAGTGAAGGAAGATAAATATAAGGAGTCTGTATTACTTTCTGTTAACCGCAGCCATCCAGATTACTCATCTTTCAAGCCAGAGAAACGACAAGTTGAAGAAGCTGTTCAAACTGGTGTTCCTTCTGTCAGTGAAAGTCGGTCGGTCAAAATCCTGAAAGTGGCTGTGATCTATAAACCAAGTGTACATGTAAATCCAGTATTTGCTTCTGTAGGTGCTGACACAGGCGAGCTTTACAGTGCTTCAGATGCCACTGACATTGTGTTTAAATATGTTGAAAAGGAAAACCTGGTTAAGCCGACAGATAAATCCATTGTGATTTTGGATGTGATATTGTGTGATGCACTGTTCAAGGGAGCCATAAAGAAAGGTTCAACGTACCCTACAGAAATCCATAAAAGAGACTTAGGAGCAGCATTTGTGAACCGGATGCAAGCCCATCACATTGTGACAAGGGGAAATGACTCAGTTGTTCGTAAAGGTGGTTTGAAAACAGTCCAGATAATGACAGAAAGGCGGCAAGGTAATAAGAAAATGACCAAGTTATCAGGACTGGAAACATTTTTAGTGGATCCTGAAGCTTTGGCATCAGAGCTGCAAAAGAAGTTCGCTTGCAGTACAACGGTGGAAGAACTACCAGGTAAGAAGGGGCAGGAGGTTCTGGTTCAAGGTGGAGTGATTGAGAATCAGGCAAAACACTTGATTGAACAATATGGGATTCCAAAGAGATACATTAAGGTTCTTGACAAAACCAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

382

Amino Acids

42.07

Weight (kDa)

8.37

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_eIF2D PF25304 64 - 145 2.4e-29 eIF2D winged helix domain
SWIB_eIF2D PF26291 187 - 247 8.3e-12 eIF2D, SWIB domain
SUI1 PF01253 293 - 370 3.3e-21 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 436, 904
AclWI GGATC 3 cut(s) 168, 953, 966
AcuI CTGAAG 5 cut(s) 36, 137, 288, 615, 984
AdeI CACNNNGTG 1 cut(s) 835
AfaI GTAC 3 cut(s) 573, 767, 1006
AfiI CCNNNNNNNGG 2 cut(s) 260, 547
AflIII ACRYGT 2 cut(s) 10, 574
AgsI TTSAA 9 cut(s) 463, 485, 497, 665, 739, 762, 877, 1055, 1094
AjnI CCWGG 3 cut(s) 675, 1024, 1139
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AluBI AGCT 6 cut(s) 121, 365, 491, 619, 968, 982
AluI AGCT 6 cut(s) 121, 365, 491, 619, 968, 982
Alw26I GTCTC 1 cut(s) 783
AlwI GGATC 3 cut(s) 168, 953, 966
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 3 cut(s) 438, 800, 982
Asp700I GAANNNNTTC 1 cut(s) 492
AsuC2I CCSGG 1 cut(s) 261
AsuHPI GGTGA 1 cut(s) 122
BamHI GGATCC 1 cut(s) 958
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 3 cut(s) 450, 812, 969
BccI CCATC 2 cut(s) 450, 834
BciT130I CCWGG 3 cut(s) 677, 1026, 1141
BcnI CCSGG 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 783
BfaI CTAG 2 cut(s) 72, 317
BfmI CTRYAG 3 cut(s) 375, 597, 771
BisI GCNGC 4 cut(s) 439, 801, 905, 983
BlsI GCNGC 4 cut(s) 440, 802, 906, 984
Bme1390I CCNGG 4 cut(s) 261, 677, 1026, 1141
BmiI GGNNCC 2 cut(s) 745, 960
BmrFI CCNGG 4 cut(s) 261, 677, 1026, 1141
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 6 cut(s) 58, 318, 625, 718, 807, 983
BmuI ACTGGG 1 cut(s) 162
Bpu10I CCTNAGC 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 813
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 547
Bse1I ACTGG 4 cut(s) 157, 505, 584, 945
Bse3DI GCAATG 1 cut(s) 221
Bse8I GATNNNNATC 1 cut(s) 165
BseBI CCWGG 3 cut(s) 677, 1026, 1141
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 5 cut(s) 166, 190, 442, 718, 822
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 2 cut(s) 260, 547
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 2 cut(s) 78, 867
BseNI ACTGG 4 cut(s) 157, 505, 584, 945
BseXI GCAGC 3 cut(s) 450, 812, 969
BsgI GTGCAG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 530
BshFI GGCC 1 cut(s) 301
BsiEI CGRYCG 1 cut(s) 530
BsiSI CCGG 2 cut(s) 261, 814
BslI CCNNNNNNNGG 2 cut(s) 260, 547
BsmAI GTCTC 1 cut(s) 783
BsnI GGCC 1 cut(s) 301
Bsp1407I TGTACA 1 cut(s) 571
Bsp143I GATC 6 cut(s) 81, 112, 142, 160, 555, 958
BspACI CCGC 2 cut(s) 436, 904
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 2 cut(s) 79, 866
BspLI GGNNCC 2 cut(s) 745, 960
BspPI GGATC 3 cut(s) 168, 953, 966
BsrDI GCAATG 1 cut(s) 221
BsrGI TGTACA 1 cut(s) 571
BsrI ACTGG 4 cut(s) 157, 505, 584, 945
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 6 cut(s) 81, 112, 142, 160, 555, 958
Bst2UI CCWGG 3 cut(s) 677, 1026, 1141
Bst4CI ACNGT 5 cut(s) 235, 626, 735, 883, 1012
BstAPI GCANNNNNTGC 1 cut(s) 223
BstAUI TGTACA 1 cut(s) 571
BstC8I GCNNGC 4 cut(s) 219, 617, 822, 1000
BstDEI CTNAG 3 cut(s) 87, 793, 853
BstF5I GGATG 5 cut(s) 166, 190, 442, 718, 822
BstKTI GATC 6 cut(s) 84, 115, 145, 163, 558, 961
BstMAI GTCTC 1 cut(s) 783
BstMBI GATC 6 cut(s) 81, 112, 142, 160, 555, 958
BstMCI CGRYCG 1 cut(s) 530
BstMWI GCNNNNNNNGC 3 cut(s) 56, 223, 635
BstNI CCWGG 3 cut(s) 677, 1026, 1141
BstNSI RCATGY 3 cut(s) 14, 196, 578
BstSCI CCNGG 4 cut(s) 259, 675, 1024, 1139
BstSFI CTRYAG 3 cut(s) 375, 597, 771
BstV1I GCAGC 3 cut(s) 450, 812, 969
BstX2I RGATCY 1 cut(s) 958
BstYI RGATCY 1 cut(s) 958
BsuRI GGCC 1 cut(s) 301
BtsCI GGATG 5 cut(s) 166, 190, 442, 718, 822
BtsIMutI CAGTG 4 cut(s) 523, 631, 639, 731
Cac8I GCNNGC 4 cut(s) 219, 617, 822, 1000
CsiI ACCWGGT 2 cut(s) 675, 1024
Csp6I GTAC 3 cut(s) 572, 766, 1005
CspCI CAANNNNNGTGG 2 cut(s) 628, 663
CviAII CATG 3 cut(s) 11, 193, 575
CviQI GTAC 3 cut(s) 572, 766, 1005
DdeI CTNAG 3 cut(s) 87, 793, 853
DpnI GATC 6 cut(s) 83, 114, 144, 162, 557, 960
DpnII GATC 6 cut(s) 81, 112, 142, 160, 555, 958
DraI TTTAAA 1 cut(s) 655
DraIII CACNNNGTG 1 cut(s) 835
Eco147I AGGCCT 1 cut(s) 301
Eco57I CTGAAG 5 cut(s) 36, 137, 288, 615, 984
EcoRII CCWGG 3 cut(s) 675, 1024, 1139
FaeI CATG 3 cut(s) 14, 196, 578
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FatI CATG 3 cut(s) 10, 192, 574
Fnu4HI GCNGC 4 cut(s) 439, 801, 905, 983
FokI GGATG 5 cut(s) 153, 197, 429, 725, 829
Fsp4HI GCNGC 4 cut(s) 439, 801, 905, 983
FspBI CTAG 2 cut(s) 72, 317
GluI GCNGC 4 cut(s) 439, 801, 905, 983
HaeIII GGCC 1 cut(s) 301
HapII CCGG 2 cut(s) 261, 814
Hin1II CATG 3 cut(s) 14, 196, 578
HincII GTYRAC 2 cut(s) 150, 433
HindII GTYRAC 2 cut(s) 150, 433
HindIII AAGCTT 1 cut(s) 966
HinfI GANTC 5 cut(s) 134, 413, 851, 1072, 1105
HpaI GTTAAC 1 cut(s) 433
HpaII CCGG 2 cut(s) 261, 814
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 5 cut(s) 150, 190, 433, 572, 811
Hpy188I TCNGA 4 cut(s) 37, 117, 634, 979
Hpy188III TCNNGA 7 cut(s) 325, 446, 541, 886, 936, 962, 1130
Hpy8I GTNNAC 5 cut(s) 150, 190, 433, 572, 811
HpyAV CCTTC 6 cut(s) 183, 260, 312, 388, 519, 1027
HpyCH4III ACNGT 5 cut(s) 235, 626, 735, 883, 1012
HpyCH4IV ACGT 1 cut(s) 764
HpyCH4V TGCA 9 cut(s) 31, 59, 101, 217, 226, 731, 820, 985, 1002
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 223, 635
HpyF3I CTNAG 3 cut(s) 87, 793, 853
HpySE526I ACGT 1 cut(s) 764
Hsp92II CATG 3 cut(s) 14, 196, 578
KspAI GTTAAC 1 cut(s) 433
Kzo9I GATC 6 cut(s) 81, 112, 142, 160, 555, 958
LmnI GCTCC 2 cut(s) 743, 797
Lsp1109I GCAGC 3 cut(s) 450, 812, 969
LweI GCATC 6 cut(s) 58, 318, 625, 718, 807, 983
MabI ACCWGGT 2 cut(s) 675, 1024
MaeI CTAG 2 cut(s) 72, 317
MaeII ACGT 1 cut(s) 764
MaeIII GTNAC 3 cut(s) 94, 357, 835
MalI GATC 6 cut(s) 83, 114, 144, 162, 557, 960
MboI GATC 6 cut(s) 81, 112, 142, 160, 555, 958
MboII GAAGA 3 cut(s) 410, 497, 1028
MflI RGATCY 1 cut(s) 958
MluCI AATT 1 cut(s) 344
MlyI GAGTC 2 cut(s) 422, 845
MnlI CCTC 4 cut(s) 82, 175, 180, 1036
MroXI GAANNNNTTC 1 cut(s) 492
MseI TTAA 4 cut(s) 432, 654, 681, 1122
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 2 cut(s) 261, 814
MspR9I CCNGG 4 cut(s) 261, 677, 1026, 1141
MvaI CCWGG 3 cut(s) 677, 1026, 1141
MwoI GCNNNNNNNGC 3 cut(s) 56, 223, 635
NciI CCSGG 1 cut(s) 261
NdeII GATC 6 cut(s) 81, 112, 142, 160, 555, 958
NlaIII CATG 3 cut(s) 14, 196, 578
NlaIV GGNNCC 2 cut(s) 745, 960
NmuCI GTSAC 1 cut(s) 835
NspI RCATGY 3 cut(s) 14, 196, 578
PceI AGGCCT 1 cut(s) 301
PciI ACATGT 2 cut(s) 10, 574
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 3 cut(s) 134, 1072, 1105
PkrI GCNGC 4 cut(s) 440, 802, 906, 984
PleI GAGTC 2 cut(s) 421, 845
PpsI GAGTC 2 cut(s) 421, 845
PscI ACATGT 2 cut(s) 10, 574
Psp6I CCWGG 3 cut(s) 675, 1024, 1139
PspGI CCWGG 3 cut(s) 675, 1024, 1139
PspN4I GGNNCC 2 cut(s) 745, 960
PsuI RGATCY 1 cut(s) 958
RsaI GTAC 3 cut(s) 573, 767, 1006
RsaNI GTAC 3 cut(s) 572, 766, 1005
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 4 cut(s) 432, 654, 681, 1122
SatI GCNGC 4 cut(s) 439, 801, 905, 983
Sau3AI GATC 6 cut(s) 81, 112, 142, 160, 555, 958
SchI GAGTC 2 cut(s) 422, 845
ScrFI CCNGG 4 cut(s) 261, 677, 1026, 1141
SexAI ACCWGGT 2 cut(s) 675, 1024
SfaNI GCATC 6 cut(s) 58, 318, 625, 718, 807, 983
SfcI CTRYAG 3 cut(s) 375, 597, 771
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 1 cut(s) 344
SseBI AGGCCT 1 cut(s) 301
SsiI CCGC 2 cut(s) 436, 904
SspMI CTAG 2 cut(s) 72, 317
StuI AGGCCT 1 cut(s) 301
StyD4I CCNGG 4 cut(s) 259, 675, 1024, 1139
TaaI ACNGT 5 cut(s) 235, 626, 735, 883, 1012
TaiI ACGT 1 cut(s) 767
TaqII GACCGA 2 cut(s) 516, 520
TasI AATT 1 cut(s) 344
TatI WGTACW 2 cut(s) 571, 1004
TauI GCSGC 1 cut(s) 907
TfiI GAWTC 3 cut(s) 134, 1072, 1105
Tru1I TTAA 4 cut(s) 432, 654, 681, 1122
Tru9I TTAA 4 cut(s) 432, 654, 681, 1122
TscAI CASTG 4 cut(s) 523, 631, 646, 738
TseFI GTSAC 1 cut(s) 835
TseI GCWGC 3 cut(s) 438, 800, 982
Tsp45I GTSAC 1 cut(s) 835
TspRI CASTG 4 cut(s) 523, 631, 646, 738
XceI RCATGY 3 cut(s) 14, 196, 578
XcmI CCANNNNNNNNNTGG 2 cut(s) 184, 706
XmnI GAANNNNTTC 1 cut(s) 492
XspI CTAG 2 cut(s) 72, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.