Rorug05G0495000

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000686
Physical Location & Seq
Forward (+)
67725258 .. 67726046
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0495000.1

Sequence Viewer

Length: 387 bp
ATGGCAAAAAAAGCCATGACCCAGATGAGCAACAAGGATTATGTGAACAAGAAGACAGTCCTCTTTTCCAGACAAACTTCCAGTAATAGAGTTACCCAAAACACAAGGTTTGTAGACTTTAGGTTCAAGCTTTCTGCGTGGTCGGGATTCTTGCCTATGAGGTTACTCAAACATTTTGCTGACAAGGTGGCGGGAACTCTATGCTTGGGTATGGCCTCTGCGAGGGCGAAACCTTCACGAAATGATTCTTCATCCAGAAGATCAATGCCATACGTGACTCCGGGTGATTCTCATAGAGAAGAGGCCATAGAAGATTGCATTGAGTTCATCAACTCTTCTTCTACTTTTTCAAGAGCAACTCCTATTGCGTCACAGGTTTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

128

Amino Acids

14.34

Weight (kDa)

10.23

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 114
AciI CCGC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 2 cut(s) 127, 351
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
AoxI GGCC 2 cut(s) 213, 303
Asp700I GAANNNNTTC 1 cut(s) 244
AsuC2I CCSGG 1 cut(s) 282
AsuHPI GGTGA 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 59
BcnI CCSGG 1 cut(s) 282
Bme1390I CCNGG 1 cut(s) 282
BmrFI CCNGG 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 274
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 81
BshFI GGCC 2 cut(s) 215, 305
BsiSI CCGG 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 222
BsnI GGCC 2 cut(s) 215, 305
Bsp143I GATC 1 cut(s) 260
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 215, 305
BsrI ACTGG 1 cut(s) 81
BssMI GATC 1 cut(s) 260
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 2 cut(s) 294, 340
BstBAI YACGTR 1 cut(s) 274
BstENI CCTNNNNNAGG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 1 cut(s) 263
BstMBI GATC 1 cut(s) 260
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 59
BsuRI GGCC 2 cut(s) 215, 305
BtsCI GGATG 1 cut(s) 251
CseI GACGC 1 cut(s) 357
CviAII CATG 1 cut(s) 16
CviJI RGCY 4 cut(s) 14, 130, 215, 305
CviKI_1 RGCY 4 cut(s) 14, 130, 215, 305
DpnI GATC 1 cut(s) 262
DpnII GATC 1 cut(s) 260
Eam1104I CTCTTC 2 cut(s) 294, 340
EarI CTCTTC 2 cut(s) 294, 340
EcoNI CCTNNNNNAGG 1 cut(s) 220
FaeI CATG 1 cut(s) 19
FaiI YATR 8 cut(s) 17, 42, 158, 202, 212, 271, 294, 308
FatI CATG 1 cut(s) 15
FauI CCCGC 1 cut(s) 184
FblI GTMKAC 1 cut(s) 114
FokI GGATG 1 cut(s) 238
HaeIII GGCC 2 cut(s) 215, 305
HapII CCGG 1 cut(s) 281
HgaI GACGC 1 cut(s) 357
Hin1II CATG 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 4 cut(s) 147, 245, 277, 287
HpaII CCGG 1 cut(s) 281
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 2 cut(s) 46, 115
Hpy188III TCNNGA 5 cut(s) 69, 144, 237, 255, 351
Hpy8I GTNNAC 2 cut(s) 46, 115
HpyAV CCTTC 1 cut(s) 243
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 1 cut(s) 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 1 cut(s) 19
Kzo9I GATC 1 cut(s) 260
LpnPI CCDG 6 cut(s) 35, 82, 94, 268, 294, 359
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 4 cut(s) 91, 162, 274, 369
MalI GATC 1 cut(s) 262
MboI GATC 1 cut(s) 260
MboII GAAGA 8 cut(s) 64, 240, 270, 311, 323, 327, 330, 372
MlyI GAGTC 1 cut(s) 271
MnlI CCTC 5 cut(s) 71, 153, 216, 226, 295
MroXI GAANNNNTTC 1 cut(s) 244
MseI TTAA 1 cut(s) 385
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 282
NdeII GATC 1 cut(s) 260
NlaIII CATG 1 cut(s) 19
NmuCI GTSAC 2 cut(s) 274, 369
PdmI GAANNNNTTC 1 cut(s) 244
PfeI GAWTC 3 cut(s) 147, 245, 287
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Ppu21I YACGTR 1 cut(s) 274
SaqAI TTAA 1 cut(s) 385
Sau3AI GATC 1 cut(s) 260
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 282
SetI ASST 8 cut(s) 110, 125, 132, 164, 189, 235, 276, 378
SsiI CCGC 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 280
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 276
TfiI GAWTC 3 cut(s) 147, 245, 287
Tru1I TTAA 1 cut(s) 385
Tru9I TTAA 1 cut(s) 385
TseFI GTSAC 2 cut(s) 274, 369
Tsp45I GTSAC 2 cut(s) 274, 369
TspDTI ATGAA 2 cut(s) 240, 316
XagI CCTNNNNNAGG 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.