Rmu_sc0000704.1_g000011

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000704.1
OG0000686
Physical Location & Seq
Forward (+)
54158 .. 57295
3138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000704.1_g000011.1.cds

Sequence Viewer

Length: 930 bp
atggggcaacatgttgatgttgctgatgtgcagtctgaaccaagttctgcttcagttgcacctattgatgctaggaatgagattgctgaggaagtaactgcaaatgatcaacatcctctttccgccgaggatgtggacatgcttttggaaaaaatgccttttacaagcattgcatacaactgtcaaggacaaagaccttcccatgcccggaagcactctatggtatggtcaaactatgttttaccttgtaggccttcaggcatcacactagacatcaagaaatcatcatacaagaaattatcaaagtggttacaagctaaatgttctaaaggattggagtcgcactgtcgcagagaatctagagatgcagaccgcaatggaggtggctcggtggacggtgatggaagagccatccagattactcatctttcaagccagagaaacgacaaagttgaagaagctgttcaaactggtgttcctgctgtcagtgaaagtcggtcgagtgcttcagatgccactgacattgtgtttaaatatgttgaaaaggaaaacctggttaagcctacagataaatcaattgtgattttggatgcaatattgtgtgatgcactgttcaagggggccataaagaaaggttcaacataccctacagaaatccataaaagagacttagaagcagcatttgtgaaccggatggaagcccatcacattgtgacaaggggaaatgactcggttgttcgtaaaggtagtttgaaaacagtccagataatgacagaaaggcggcaaggtaataagaaaatgaccaagttatcaggactggaaacattttcagtggatcctgaagctttggcatcagagctacaaaagaatttcgcttgcagtacaacggtggcagaactaccaggtgtgtggcacaaatatgcacggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

309

Amino Acids

34.07

Weight (kDa)

8.14

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 123, 373, 781
AclWI GGATC 2 cut(s) 830, 843
AcsI RAATTY 1 cut(s) 868
AcuI CTGAAG 4 cut(s) 36, 240, 492, 861
AdeI CACNNNGTG 1 cut(s) 712
AfaI GTAC 1 cut(s) 883
AfiI CCNNNNNNNGG 1 cut(s) 207
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 7 cut(s) 432, 455, 467, 542, 616, 639, 754
AjnI CCWGG 2 cut(s) 552, 901
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AluBI AGCT 4 cut(s) 317, 461, 845, 859
AluI AGCT 4 cut(s) 317, 461, 845, 859
Alw26I GTCTC 1 cut(s) 660
AlwI GGATC 2 cut(s) 830, 843
AoxI GGCC 2 cut(s) 251, 621
ApeKI GCWGC 1 cut(s) 677
ApoI RAATTY 1 cut(s) 868
Asp700I GAANNNNTTC 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 621
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 410
BamHI GGATCC 1 cut(s) 835
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 689
BccI CCATC 4 cut(s) 395, 419, 688, 711
BciT130I CCWGG 2 cut(s) 554, 903
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 660
BfaI CTAG 3 cut(s) 72, 269, 360
BfmI CTRYAG 2 cut(s) 564, 648
BisI GCNGC 2 cut(s) 678, 782
BlsI GCNGC 2 cut(s) 679, 783
Bme1390I CCNGG 3 cut(s) 208, 554, 903
BmgT120I GGNCC 1 cut(s) 621
BmiI GGNNCC 2 cut(s) 622, 837
BmrFI CCNGG 3 cut(s) 208, 554, 903
BmsI GCATC 7 cut(s) 58, 270, 355, 502, 580, 595, 860
Bpu10I CCTNAGC 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 208
BsaBI GATNNNNATC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 690
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse1I ACTGG 2 cut(s) 475, 822
Bse3DI GCAATG 2 cut(s) 168, 382
Bse8I GATNNNNATC 1 cut(s) 111
BseBI CCWGG 2 cut(s) 554, 903
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 5 cut(s) 112, 136, 411, 595, 699
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMI GCAATG 2 cut(s) 168, 382
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 2 cut(s) 475, 822
BseXI GCAGC 1 cut(s) 689
BsgI GTGCAG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 500
BshFI GGCC 2 cut(s) 253, 623
BsiEI CGRYCG 1 cut(s) 500
BsiSI CCGG 2 cut(s) 208, 691
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 660
BsnI GGCC 2 cut(s) 253, 623
Bsp143I GATC 2 cut(s) 106, 835
BspACI CCGC 3 cut(s) 123, 373, 781
BspANI GGCC 2 cut(s) 253, 623
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 622, 837
BspPI GGATC 2 cut(s) 830, 843
BspQI GCTCTTC 1 cut(s) 400
BsrDI GCAATG 2 cut(s) 168, 382
BsrI ACTGG 2 cut(s) 475, 822
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 106, 835
Bst2UI CCWGG 2 cut(s) 554, 903
Bst4CI ACNGT 7 cut(s) 182, 347, 398, 612, 760, 889, 927
Bst6I CTCTTC 1 cut(s) 400
BstC8I GCNNGC 1 cut(s) 877
BstDEI CTNAG 2 cut(s) 87, 670
BstF5I GGATG 5 cut(s) 112, 136, 411, 595, 699
BstKTI GATC 2 cut(s) 109, 838
BstMAI GTCTC 1 cut(s) 660
BstMBI GATC 2 cut(s) 106, 835
BstMCI CGRYCG 1 cut(s) 500
BstMWI GCNNNNNNNGC 2 cut(s) 56, 512
BstNI CCWGG 2 cut(s) 554, 903
BstNSI RCATGY 2 cut(s) 14, 142
BstSCI CCNGG 3 cut(s) 206, 552, 901
BstSFI CTRYAG 2 cut(s) 564, 648
BstV1I GCAGC 1 cut(s) 689
BstX2I RGATCY 1 cut(s) 835
BstXI CCANNNNNNTGG 1 cut(s) 909
BstYI RGATCY 1 cut(s) 835
BsuRI GGCC 2 cut(s) 253, 623
BtsCI GGATG 5 cut(s) 112, 136, 411, 595, 699
BtsIMutI CAGTG 5 cut(s) 343, 493, 516, 608, 837
Cac8I GCNNGC 1 cut(s) 877
Cfr13I GGNCC 1 cut(s) 621
CsiI ACCWGGT 2 cut(s) 552, 901
Csp6I GTAC 1 cut(s) 882
CspCI CAANNNNNGTGG 4 cut(s) 364, 399, 505, 540
CviAII CATG 3 cut(s) 11, 139, 203
CviQI GTAC 1 cut(s) 882
DdeI CTNAG 2 cut(s) 87, 670
DpnI GATC 2 cut(s) 108, 837
DpnII GATC 2 cut(s) 106, 835
DraI TTTAAA 1 cut(s) 532
DraIII CACNNNGTG 1 cut(s) 712
Eam1104I CTCTTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 400
EciI GGCGGA 1 cut(s) 112
Eco147I AGGCCT 1 cut(s) 253
Eco57I CTGAAG 4 cut(s) 36, 240, 492, 861
EcoRII CCWGG 2 cut(s) 552, 901
FaeI CATG 3 cut(s) 14, 142, 206
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FatI CATG 3 cut(s) 10, 138, 202
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 678, 782
FokI GGATG 5 cut(s) 99, 143, 398, 602, 706
Fsp4HI GCNGC 2 cut(s) 678, 782
FspBI CTAG 3 cut(s) 72, 269, 360
GluI GCNGC 2 cut(s) 678, 782
HaeIII GGCC 2 cut(s) 253, 623
HapII CCGG 2 cut(s) 208, 691
Hin1II CATG 3 cut(s) 14, 142, 206
HindIII AAGCTT 1 cut(s) 843
HinfI GANTC 3 cut(s) 338, 356, 728
HpaII CCGG 2 cut(s) 208, 691
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 3 cut(s) 136, 394, 688
Hpy188I TCNGA 3 cut(s) 37, 511, 856
Hpy188III TCNNGA 6 cut(s) 277, 360, 415, 763, 813, 839
Hpy8I GTNNAC 3 cut(s) 136, 394, 688
HpyAV CCTTC 2 cut(s) 207, 264
HpyCH4III ACNGT 7 cut(s) 182, 347, 398, 612, 760, 889, 927
HpyCH4V TGCA 9 cut(s) 31, 59, 101, 173, 368, 593, 608, 879, 923
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 512
HpyF3I CTNAG 2 cut(s) 87, 670
Hsp92II CATG 3 cut(s) 14, 142, 206
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 106, 835
LguI GCTCTTC 1 cut(s) 400
Lsp1109I GCAGC 1 cut(s) 689
LweI GCATC 7 cut(s) 58, 270, 355, 502, 580, 595, 860
MabI ACCWGGT 2 cut(s) 552, 901
MaeI CTAG 3 cut(s) 72, 269, 360
MaeIII GTNAC 3 cut(s) 94, 309, 712
MalI GATC 2 cut(s) 108, 837
MboI GATC 2 cut(s) 106, 835
MboII GAAGA 2 cut(s) 417, 467
MfeI CAATTG 1 cut(s) 576
MflI RGATCY 1 cut(s) 835
MluCI AATT 3 cut(s) 296, 576, 868
MlyI GAGTC 2 cut(s) 347, 722
MnlI CCTC 4 cut(s) 82, 121, 126, 374
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 2 cut(s) 531, 558
MslI CAYNNNNRTG 2 cut(s) 15, 918
MspI CCGG 2 cut(s) 208, 691
MspR9I CCNGG 3 cut(s) 208, 554, 903
MunI CAATTG 1 cut(s) 576
MvaI CCWGG 2 cut(s) 554, 903
MwoI GCNNNNNNNGC 2 cut(s) 56, 512
NciI CCSGG 1 cut(s) 208
NdeII GATC 2 cut(s) 106, 835
NlaIII CATG 3 cut(s) 14, 142, 206
NlaIV GGNNCC 2 cut(s) 622, 837
NmeAIII GCCGAG 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 712
NspI RCATGY 2 cut(s) 14, 142
PceI AGGCCT 1 cut(s) 253
PciI ACATGT 1 cut(s) 10
PciSI GCTCTTC 1 cut(s) 400
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 2 cut(s) 679, 783
PleI GAGTC 2 cut(s) 346, 722
PpsI GAGTC 2 cut(s) 346, 722
PscI ACATGT 1 cut(s) 10
Psp6I CCWGG 2 cut(s) 552, 901
PspGI CCWGG 2 cut(s) 552, 901
PspN4I GGNNCC 2 cut(s) 622, 837
PspPI GGNCC 1 cut(s) 621
PsuI RGATCY 1 cut(s) 835
RsaI GTAC 1 cut(s) 883
RsaNI GTAC 1 cut(s) 882
RseI CAYNNNNRTG 2 cut(s) 15, 918
SapI GCTCTTC 1 cut(s) 400
SaqAI TTAA 2 cut(s) 531, 558
SatI GCNGC 2 cut(s) 678, 782
Sau3AI GATC 2 cut(s) 106, 835
Sau96I GGNCC 1 cut(s) 621
SchI GAGTC 2 cut(s) 347, 722
ScrFI CCNGG 3 cut(s) 208, 554, 903
SexAI ACCWGGT 2 cut(s) 552, 901
SfaNI GCATC 7 cut(s) 58, 270, 355, 502, 580, 595, 860
SfcI CTRYAG 2 cut(s) 564, 648
SmiMI CAYNNNNRTG 2 cut(s) 15, 918
Sse9I AATT 3 cut(s) 296, 576, 868
SseBI AGGCCT 1 cut(s) 253
SsiI CCGC 3 cut(s) 123, 373, 781
SspI AATATT 1 cut(s) 597
SspMI CTAG 3 cut(s) 72, 269, 360
StuI AGGCCT 1 cut(s) 253
StyD4I CCNGG 3 cut(s) 206, 552, 901
TaaI ACNGT 7 cut(s) 182, 347, 398, 612, 760, 889, 927
TaqI TCGA 1 cut(s) 500
TaqII GACCGA 1 cut(s) 486
TasI AATT 3 cut(s) 296, 576, 868
TatI WGTACW 1 cut(s) 881
TauI GCSGC 1 cut(s) 784
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 531, 558
Tru9I TTAA 2 cut(s) 531, 558
TscAI CASTG 5 cut(s) 350, 493, 523, 615, 837
TseFI GTSAC 1 cut(s) 712
TseI GCWGC 1 cut(s) 677
Tsp45I GTSAC 1 cut(s) 712
TspRI CASTG 5 cut(s) 350, 493, 523, 615, 837
XapI RAATTY 1 cut(s) 868
XbaI TCTAGA 1 cut(s) 359
XceI RCATGY 2 cut(s) 14, 142
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 3 cut(s) 72, 269, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.