Rmu_sc0000411.1_g000009

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000411.1
OG0000686
Physical Location & Seq
Forward (+)
36377 .. 36927
551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000411.1_g000009.1.cds

Sequence Viewer

Length: 444 bp
atggggcaacatgttgatgttgctgatgtgcagtctgaaccaagttctgcttcagttgcaccgattgatgctaggaatgagatcgctgaggaagtaactgcaaatgtaggtgatctgaagctaacagatgatgattccaccgatcagtcaactgggggggatcaacatcctccttccaccgaggatgtggacatgcttttggaaaagtgtcttttgcaagcattgcatacaactgtcaaagacaaagaccttcccatgcccggaagcactctatggtcaaactatgttttaccttgtaggccttcaggcatcatactagacatcaagaaatcatcatacaagaaattatcaaagtggttacaagctaaatgttctacaggattggtacgttatgctttcatttccactttctccaaagtgaccactttttcagttttaacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

147

Amino Acids

15.99

Weight (kDa)

4.92

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 168
AcuI CTGAAG 3 cut(s) 36, 137, 288
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 10
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AluBI AGCT 2 cut(s) 121, 365
AluI AGCT 2 cut(s) 121, 365
AlwI GGATC 1 cut(s) 168
AoxI GGCC 1 cut(s) 299
AsuC2I CCSGG 1 cut(s) 261
AsuHPI GGTGA 1 cut(s) 122
BbvCI CCTCAGC 1 cut(s) 87
BcnI CCSGG 1 cut(s) 261
BfaI CTAG 3 cut(s) 72, 317, 442
BfmI CTRYAG 1 cut(s) 375
Bme1390I CCNGG 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 261
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 2 cut(s) 58, 318
BmuI ACTGGG 1 cut(s) 162
Bpu10I CCTNAGC 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 221
Bse8I GATNNNNATC 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 2 cut(s) 166, 190
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 50
BshFI GGCC 1 cut(s) 301
BsiSI CCGG 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 260
BsnI GGCC 1 cut(s) 301
Bsp143I GATC 4 cut(s) 81, 112, 142, 160
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 79
BspPI GGATC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 221
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 4 cut(s) 81, 112, 142, 160
Bst4CI ACNGT 1 cut(s) 235
BstAPI GCANNNNNTGC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 2 cut(s) 166, 190
BstKTI GATC 4 cut(s) 84, 115, 145, 163
BstMBI GATC 4 cut(s) 81, 112, 142, 160
BstMWI GCNNNNNNNGC 2 cut(s) 56, 223
BstNSI RCATGY 2 cut(s) 14, 196
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 375
BsuRI GGCC 1 cut(s) 301
BtsCI GGATG 2 cut(s) 166, 190
Cac8I GCNNGC 1 cut(s) 219
Csp6I GTAC 1 cut(s) 386
CviAII CATG 3 cut(s) 11, 193, 256
CviJI RGCY 3 cut(s) 121, 301, 365
CviKI_1 RGCY 3 cut(s) 121, 301, 365
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 1 cut(s) 87
DpnI GATC 4 cut(s) 83, 114, 144, 162
DpnII GATC 4 cut(s) 81, 112, 142, 160
Eco147I AGGCCT 1 cut(s) 301
Eco57I CTGAAG 3 cut(s) 36, 137, 288
FaeI CATG 3 cut(s) 14, 196, 259
FaiI YATR 9 cut(s) 12, 194, 228, 257, 274, 285, 314, 337, 393
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FatI CATG 3 cut(s) 10, 192, 255
FokI GGATG 2 cut(s) 153, 197
FspBI CTAG 3 cut(s) 72, 317, 442
HaeIII GGCC 1 cut(s) 301
HapII CCGG 1 cut(s) 261
Hin1II CATG 3 cut(s) 14, 196, 259
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HinfI GANTC 1 cut(s) 134
HpaII CCGG 1 cut(s) 261
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 150, 190
Hpy188I TCNGA 2 cut(s) 37, 117
Hpy188III TCNNGA 1 cut(s) 325
Hpy8I GTNNAC 2 cut(s) 150, 190
HpyAV CCTTC 3 cut(s) 183, 260, 312
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 5 cut(s) 31, 59, 101, 217, 226
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 223
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 3 cut(s) 14, 196, 259
Kzo9I GATC 4 cut(s) 81, 112, 142, 160
LpnPI CCDG 4 cut(s) 138, 274, 291, 363
LweI GCATC 2 cut(s) 58, 318
MaeI CTAG 3 cut(s) 72, 317, 442
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 3 cut(s) 94, 357, 418
MalI GATC 4 cut(s) 83, 114, 144, 162
MboI GATC 4 cut(s) 81, 112, 142, 160
MluCI AATT 1 cut(s) 344
MnlI CCTC 3 cut(s) 82, 175, 180
MseI TTAA 1 cut(s) 437
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 261
MwoI GCNNNNNNNGC 2 cut(s) 56, 223
NciI CCSGG 1 cut(s) 261
NdeII GATC 4 cut(s) 81, 112, 142, 160
NlaIII CATG 3 cut(s) 14, 196, 259
NmuCI GTSAC 1 cut(s) 418
NspI RCATGY 2 cut(s) 14, 196
PceI AGGCCT 1 cut(s) 301
PciI ACATGT 1 cut(s) 10
PfeI GAWTC 1 cut(s) 134
PscI ACATGT 1 cut(s) 10
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 437
Sau3AI GATC 4 cut(s) 81, 112, 142, 160
ScrFI CCNGG 1 cut(s) 261
SetI ASST 7 cut(s) 112, 123, 252, 295, 367, 391, 443
SfaNI GCATC 2 cut(s) 58, 318
SfcI CTRYAG 1 cut(s) 375
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 1 cut(s) 344
SseBI AGGCCT 1 cut(s) 301
SspMI CTAG 3 cut(s) 72, 317, 442
StuI AGGCCT 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 391
TasI AATT 1 cut(s) 344
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TseFI GTSAC 1 cut(s) 418
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 1 cut(s) 388
XceI RCATGY 2 cut(s) 14, 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XspI CTAG 3 cut(s) 72, 317, 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.