Rmu_sc0003293.1_g000005

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003293.1
OG0000686
Physical Location & Seq
Reverse (-)
8880 .. 12629
3750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003293.1_g000005.1.cds

Sequence Viewer

Length: 1449 bp
atgctgaaagggggcgaggtttctcgatatgttattggaggggcagatttgatgtttcccggtatcagcatacctgctgaaggtttaccatcgtttatagctggggaagcatgggcggttaaagttctgggaaatccagctcccattgctgtgggaactactacaatgagttgcactgaagcgttaaaagctggattgcgtggaaaagccttaaaaattgctcactattatggtttcttagaagatgctgtttttgaggatcctaccttgtcatcagctcaaatttctgattcatataatggtgcaaatgatggatcacatgaacaactgaatcgcattggtgataaggaattggggcaacatgttgaagttgctgatgtgcagtctgaacaaagttctgcttcggttgcaccgattgatgttaggaatgagattgctgaggaagtaactgcaaatgtaggtgatctgaagctaacagatgatgattctgctaatcagtcgactggggaggatcaacatcctctttcggccgaggatgtggacatgcttttggaaaaatgccttttgcaagcattgcatacaactgtcaaagacaaagaccttcccatgcccggaagcactctatggtcaaactatgttttaccttgtaggccttcaggcatcacactagacatcaagaaatcatcacacaagaaattatcaaagtggttacaagctaaatgttctacaggattgattagagtgaaggaagataaatacaagaaggagtctgtattactttctattgaccgcagccatccagattactcatctttcaagccagagaaacgacaagttgaagaagctgttcaaactggtgttccttctgtcagtgaaagtcggtcggtcaaaatcctgaaagtggctgtgatctataaaccaagtgtacatgtaaatccagtttttgcttctgtaggtgctgacacaggcgagctttacagtgcttcggatgccactgacattgtgtttaaatatgttgaaaaggaaaacctggttaagccgacagataaatccattgtgattttggatgcgatattgtgtgatgcactgttcaagggggccataaagaaaggttcaacgttccctacagaaattcataaaagagacttaggagcagcgtttgtgaactggatgcaagcccatcacattgtgacaaggggaaatgactcagtggttcgtaaaggtggtttgaaaacagtccagataatgacagaaaggcggcaaggtaataagaaaatgaccaagtcatcaggactggaaacatttttagtggatcctgaagctttggcatcagagctgcaaaagaagtttttattggagaactaccaggtgtgtggcacaaatatgcactctgaattagtttttattggagagtatcttttctctattgactcattatgtggactgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

482

Amino Acids

52.46

Weight (kDa)

5.72

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 82
AccI GTMKAC 1 cut(s) 500
AciI CCGC 3 cut(s) 116, 790, 1258
AclI AACGTT 1 cut(s) 1118
AclWI GGATC 6 cut(s) 254, 267, 322, 519, 1307, 1320
AcoI YGGCCR 1 cut(s) 528
AcsI RAATTY 2 cut(s) 282, 1131
AcuI CTGAAG 5 cut(s) 99, 198, 488, 639, 1338
AdeI CACNNNGTG 1 cut(s) 1189
AfaI GTAC 1 cut(s) 927
AfiI CCNNNNNNNGG 3 cut(s) 80, 611, 901
AflIII ACRYGT 2 cut(s) 361, 928
AgsI TTSAA 8 cut(s) 368, 817, 839, 851, 1019, 1093, 1116, 1231
AjnI CCWGG 2 cut(s) 1029, 1365
AjuI GAANNNNNNNTTGG 2 cut(s) 1337, 1369
Alw26I GTCTC 1 cut(s) 1137
AlwI GGATC 6 cut(s) 254, 267, 322, 519, 1307, 1320
AoxI GGCC 3 cut(s) 528, 650, 1098
ApeKI GCWGC 3 cut(s) 792, 1154, 1336
ApoI RAATTY 2 cut(s) 282, 1131
Asp700I GAANNNNTTC 1 cut(s) 846
AspS9I GGNCC 1 cut(s) 1098
AsuC2I CCSGG 2 cut(s) 60, 612
AsuHPI GGTGA 2 cut(s) 353, 473
BamHI GGATCC 2 cut(s) 259, 1312
BbvCI CCTCAGC 1 cut(s) 438
BbvI GCAGC 3 cut(s) 804, 1166, 1323
BccI CCATC 4 cut(s) 97, 305, 804, 1188
BciT130I CCWGG 2 cut(s) 1031, 1367
BcnI CCSGG 2 cut(s) 60, 612
BcoDI GTCTC 1 cut(s) 1137
BfaI CTAG 1 cut(s) 668
BfmI CTRYAG 4 cut(s) 726, 951, 1125, 1445
BfuAI ACCTGC 1 cut(s) 82
BisI GCNGC 4 cut(s) 793, 1155, 1259, 1337
BlsI GCNGC 4 cut(s) 794, 1156, 1260, 1338
Bme1390I CCNGG 4 cut(s) 60, 612, 1031, 1367
BmgT120I GGNCC 1 cut(s) 1098
BmiI GGNNCC 3 cut(s) 261, 1099, 1314
BmrFI CCNGG 4 cut(s) 60, 612, 1031, 1367
BmrI ACTGGG 1 cut(s) 513
BmsI GCATC 7 cut(s) 235, 669, 979, 1057, 1072, 1161, 1337
BmuI ACTGGG 1 cut(s) 513
Bpu10I CCTNAGC 1 cut(s) 438
BpuMI CCSGG 2 cut(s) 60, 612
BsaBI GATNNNNATC 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 531
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 611, 901
Bse1I ACTGG 5 cut(s) 508, 859, 938, 1172, 1299
Bse3DI GCAATG 2 cut(s) 144, 572
Bse8I GATNNNNATC 1 cut(s) 516
BseBI CCWGG 2 cut(s) 1031, 1367
BseDI CCNNGG 1 cut(s) 531
BseGI GGATG 6 cut(s) 517, 541, 796, 994, 1072, 1176
BseJI GATNNNNATC 1 cut(s) 516
BseLI CCNNNNNNNGG 3 cut(s) 80, 611, 901
BseMI GCAATG 2 cut(s) 144, 572
BseMII CTCAG 2 cut(s) 429, 1221
BseNI ACTGG 5 cut(s) 508, 859, 938, 1172, 1299
BseX3I CGGCCG 1 cut(s) 528
BseXI GCAGC 3 cut(s) 804, 1166, 1323
BseYI CCCAGC 1 cut(s) 101
BsgI GTGCAG 1 cut(s) 401
Bsh1285I CGRYCG 2 cut(s) 531, 884
BshFI GGCC 3 cut(s) 530, 652, 1100
BsiEI CGRYCG 2 cut(s) 531, 884
BsiSI CCGG 2 cut(s) 60, 612
BslI CCNNNNNNNGG 3 cut(s) 80, 611, 901
BsmAI GTCTC 1 cut(s) 1137
BsnI GGCC 3 cut(s) 530, 652, 1100
Bsp1407I TGTACA 1 cut(s) 925
Bsp143I GATC 6 cut(s) 259, 314, 463, 511, 909, 1312
BspACI CCGC 3 cut(s) 116, 790, 1258
BspANI GGCC 3 cut(s) 530, 652, 1100
BspCNI CTCAG 2 cut(s) 430, 1220
BspLI GGNNCC 3 cut(s) 261, 1099, 1314
BspMI ACCTGC 1 cut(s) 82
BspPI GGATC 6 cut(s) 254, 267, 322, 519, 1307, 1320
BsrDI GCAATG 2 cut(s) 144, 572
BsrGI TGTACA 1 cut(s) 925
BsrI ACTGG 5 cut(s) 508, 859, 938, 1172, 1299
BssECI CCNNGG 1 cut(s) 531
BssMI GATC 6 cut(s) 259, 314, 463, 511, 909, 1312
Bst2UI CCWGG 2 cut(s) 1031, 1367
Bst4CI ACNGT 5 cut(s) 586, 980, 1089, 1237, 1446
BstAPI GCANNNNNTGC 1 cut(s) 574
BstAUI TGTACA 1 cut(s) 925
BstC8I GCNNGC 3 cut(s) 570, 971, 1176
BstDEI CTNAG 4 cut(s) 238, 438, 1147, 1207
BstENI CCTNNNNNAGG 1 cut(s) 78
BstF5I GGATG 6 cut(s) 517, 541, 796, 994, 1072, 1176
BstKTI GATC 6 cut(s) 262, 317, 466, 514, 912, 1315
BstMAI GTCTC 1 cut(s) 1137
BstMBI GATC 6 cut(s) 259, 314, 463, 511, 909, 1312
BstMCI CGRYCG 2 cut(s) 531, 884
BstMWI GCNNNNNNNGC 6 cut(s) 107, 146, 188, 407, 574, 989
BstNI CCWGG 2 cut(s) 1031, 1367
BstNSI RCATGY 3 cut(s) 365, 547, 932
BstSCI CCNGG 4 cut(s) 58, 610, 1029, 1365
BstSFI CTRYAG 4 cut(s) 726, 951, 1125, 1445
BstV1I GCAGC 3 cut(s) 804, 1166, 1323
BstX2I RGATCY 2 cut(s) 259, 1312
BstXI CCANNNNNNTGG 2 cut(s) 151, 1373
BstYI RGATCY 2 cut(s) 259, 1312
BstZI CGGCCG 1 cut(s) 528
BsuRI GGCC 3 cut(s) 530, 652, 1100
BtsCI GGATG 6 cut(s) 517, 541, 796, 994, 1072, 1176
BtsIMutI CAGTG 6 cut(s) 174, 877, 985, 993, 1085, 1215
BveI ACCTGC 1 cut(s) 82
Cac8I GCNNGC 3 cut(s) 570, 971, 1176
Cfr13I GGNCC 1 cut(s) 1098
CsiI ACCWGGT 2 cut(s) 1029, 1365
Csp6I GTAC 1 cut(s) 926
CspCI CAANNNNNGTGG 2 cut(s) 982, 1017
CviAII CATG 6 cut(s) 111, 320, 362, 544, 607, 929
CviQI GTAC 1 cut(s) 926
DdeI CTNAG 4 cut(s) 238, 438, 1147, 1207
DpnI GATC 6 cut(s) 261, 316, 465, 513, 911, 1314
DpnII GATC 6 cut(s) 259, 314, 463, 511, 909, 1312
DraI TTTAAA 1 cut(s) 1009
DraIII CACNNNGTG 1 cut(s) 1189
EaeI YGGCCR 1 cut(s) 528
EagI CGGCCG 1 cut(s) 528
EclXI CGGCCG 1 cut(s) 528
Eco147I AGGCCT 1 cut(s) 652
Eco52I CGGCCG 1 cut(s) 528
Eco57I CTGAAG 5 cut(s) 99, 198, 488, 639, 1338
EcoNI CCTNNNNNAGG 1 cut(s) 78
EcoRII CCWGG 2 cut(s) 1029, 1365
FaeI CATG 6 cut(s) 114, 323, 365, 547, 610, 932
FalI AAGNNNNNCTT 2 cut(s) 385, 417
FatI CATG 6 cut(s) 110, 319, 361, 543, 606, 928
FblI GTMKAC 1 cut(s) 500
Fnu4HI GCNGC 4 cut(s) 793, 1155, 1259, 1337
FokI GGATG 6 cut(s) 504, 548, 783, 1001, 1079, 1183
Fsp4HI GCNGC 4 cut(s) 793, 1155, 1259, 1337
FspBI CTAG 1 cut(s) 668
GluI GCNGC 4 cut(s) 793, 1155, 1259, 1337
GsaI CCCAGC 1 cut(s) 105
HaeIII GGCC 3 cut(s) 530, 652, 1100
HapII CCGG 2 cut(s) 60, 612
Hin1II CATG 6 cut(s) 114, 323, 365, 547, 610, 932
HincII GTYRAC 1 cut(s) 501
HindII GTYRAC 1 cut(s) 501
HindIII AAGCTT 1 cut(s) 1320
HinfI GANTC 6 cut(s) 290, 331, 485, 767, 1205, 1430
HpaII CCGG 2 cut(s) 60, 612
HphI GGTGA 2 cut(s) 353, 473
Hpy166II GTNNAC 6 cut(s) 86, 501, 541, 926, 1165, 1442
Hpy188I TCNGA 6 cut(s) 289, 388, 468, 988, 1333, 1393
Hpy188III TCNNGA 7 cut(s) 24, 676, 800, 895, 1240, 1290, 1316
Hpy8I GTNNAC 6 cut(s) 86, 501, 541, 926, 1165, 1442
HpyAV CCTTC 6 cut(s) 74, 611, 663, 739, 757, 873
HpyCH4III ACNGT 5 cut(s) 586, 980, 1089, 1237, 1446
HpyCH4IV ACGT 1 cut(s) 1118
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 146, 188, 407, 574, 989
HpyF3I CTNAG 4 cut(s) 238, 438, 1147, 1207
HpySE526I ACGT 1 cut(s) 1118
Hsp92II CATG 6 cut(s) 114, 323, 365, 547, 610, 932
Kzo9I GATC 6 cut(s) 259, 314, 463, 511, 909, 1312
LmnI GCTCC 2 cut(s) 145, 1151
Lsp1109I GCAGC 3 cut(s) 804, 1166, 1323
LweI GCATC 7 cut(s) 235, 669, 979, 1057, 1072, 1161, 1337
MabI ACCWGGT 2 cut(s) 1029, 1365
MaeI CTAG 1 cut(s) 668
MaeII ACGT 1 cut(s) 1118
MaeIII GTNAC 3 cut(s) 445, 708, 1189
MalI GATC 6 cut(s) 261, 316, 465, 513, 911, 1314
MboI GATC 6 cut(s) 259, 314, 463, 511, 909, 1312
MboII GAAGA 3 cut(s) 254, 761, 851
MflI RGATCY 2 cut(s) 259, 1312
MluCI AATT 6 cut(s) 216, 282, 350, 695, 1131, 1394
MlyI GAGTC 3 cut(s) 776, 1199, 1424
MnlI CCTC 7 cut(s) 10, 32, 250, 433, 502, 526, 531
MroXI GAANNNNTTC 1 cut(s) 846
MseI TTAA 5 cut(s) 120, 185, 212, 1008, 1035
MslI CAYNNNNRTG 3 cut(s) 149, 228, 1382
MspI CCGG 2 cut(s) 60, 612
MspR9I CCNGG 4 cut(s) 60, 612, 1031, 1367
MvaI CCWGG 2 cut(s) 1031, 1367
MwoI GCNNNNNNNGC 6 cut(s) 107, 146, 188, 407, 574, 989
NciI CCSGG 2 cut(s) 60, 612
NdeII GATC 6 cut(s) 259, 314, 463, 511, 909, 1312
NlaIII CATG 6 cut(s) 114, 323, 365, 547, 610, 932
NlaIV GGNNCC 3 cut(s) 261, 1099, 1314
NmeAIII GCCGAG 1 cut(s) 556
NmuCI GTSAC 1 cut(s) 1189
NspI RCATGY 3 cut(s) 365, 547, 932
PceI AGGCCT 1 cut(s) 652
PciI ACATGT 2 cut(s) 361, 928
PcsI WCGNNNNNNNCGW 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 846
PfeI GAWTC 3 cut(s) 290, 331, 485
PflFI GACNNNGTC 1 cut(s) 1282
PkrI GCNGC 4 cut(s) 794, 1156, 1260, 1338
PleI GAGTC 3 cut(s) 775, 1199, 1424
PpsI GAGTC 3 cut(s) 775, 1199, 1424
PscI ACATGT 2 cut(s) 361, 928
Psp1406I AACGTT 1 cut(s) 1118
Psp6I CCWGG 2 cut(s) 1029, 1365
PspFI CCCAGC 1 cut(s) 101
PspGI CCWGG 2 cut(s) 1029, 1365
PspN4I GGNNCC 3 cut(s) 261, 1099, 1314
PspPI GGNCC 1 cut(s) 1098
PsuI RGATCY 2 cut(s) 259, 1312
PsyI GACNNNGTC 1 cut(s) 1282
RsaI GTAC 1 cut(s) 927
RsaNI GTAC 1 cut(s) 926
RseI CAYNNNNRTG 3 cut(s) 149, 228, 1382
SalI GTCGAC 1 cut(s) 499
SaqAI TTAA 5 cut(s) 120, 185, 212, 1008, 1035
SatI GCNGC 4 cut(s) 793, 1155, 1259, 1337
Sau3AI GATC 6 cut(s) 259, 314, 463, 511, 909, 1312
Sau96I GGNCC 1 cut(s) 1098
SchI GAGTC 3 cut(s) 776, 1199, 1424
ScrFI CCNGG 4 cut(s) 60, 612, 1031, 1367
SexAI ACCWGGT 2 cut(s) 1029, 1365
SfaNI GCATC 7 cut(s) 235, 669, 979, 1057, 1072, 1161, 1337
SfcI CTRYAG 4 cut(s) 726, 951, 1125, 1445
SmiMI CAYNNNNRTG 3 cut(s) 149, 228, 1382
Sse9I AATT 6 cut(s) 216, 282, 350, 695, 1131, 1394
SseBI AGGCCT 1 cut(s) 652
SsiI CCGC 3 cut(s) 116, 790, 1258
SspMI CTAG 1 cut(s) 668
StuI AGGCCT 1 cut(s) 652
StyD4I CCNGG 4 cut(s) 58, 610, 1029, 1365
TaaI ACNGT 5 cut(s) 586, 980, 1089, 1237, 1446
TaiI ACGT 1 cut(s) 1121
TaqI TCGA 2 cut(s) 25, 500
TaqII GACCGA 2 cut(s) 870, 874
TasI AATT 6 cut(s) 216, 282, 350, 695, 1131, 1394
TatI WGTACW 1 cut(s) 925
TauI GCSGC 1 cut(s) 1261
TfiI GAWTC 3 cut(s) 290, 331, 485
Tru1I TTAA 5 cut(s) 120, 185, 212, 1008, 1035
Tru9I TTAA 5 cut(s) 120, 185, 212, 1008, 1035
TscAI CASTG 6 cut(s) 181, 877, 985, 1000, 1092, 1215
TseFI GTSAC 1 cut(s) 1189
TseI GCWGC 3 cut(s) 792, 1154, 1336
Tsp45I GTSAC 1 cut(s) 1189
TspDTI ATGAA 3 cut(s) 282, 336, 1124
TspRI CASTG 6 cut(s) 181, 877, 985, 1000, 1092, 1215
Tth111I GACNNNGTC 1 cut(s) 1282
XagI CCTNNNNNAGG 1 cut(s) 78
XapI RAATTY 2 cut(s) 282, 1131
XceI RCATGY 3 cut(s) 365, 547, 932
XcmI CCANNNNNNNNNTGG 1 cut(s) 1060
XmiI GTMKAC 1 cut(s) 500
XmnI GAANNNNTTC 1 cut(s) 846
XspI CTAG 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.