RchiOBHm_Chr6g0250221

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000686
Physical Location & Seq
Reverse (-)
5854072 .. 5854706
635 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22431

Sequence Viewer

Length: 210 bp
ATGTTTCCTGGTATCAGCATACCTGCTGAAGGTCTGCCACTGTCTATAGCTGGGGAAGCATGGGCGGTTAAAGTTCCAGGAAATCGAGCTCCCATTGCTGTGGGAACTACTAGTATGAGCTGCACTGAAGCATTAAAAGCTGGGTTGCGTGGAAAAGCCTTAAAAATTGCTCACTATTATGGTGACTTACTTTGGCAAGTATCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

69

Amino Acids

7.18

Weight (kDa)

8.98

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUA_elF2D PF26292 1 - 62 5.2e-16 elF2D, PUA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 31
AciI CCGC 1 cut(s) 65
AcuI CTGAAG 2 cut(s) 48, 147
AfiI CCNNNNNNNGG 1 cut(s) 29
AhlI ACTAGT 1 cut(s) 110
AjnI CCWGG 2 cut(s) 7, 76
AluBI AGCT 4 cut(s) 50, 89, 120, 140
AluI AGCT 4 cut(s) 50, 89, 120, 140
Alw21I GWGCWC 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 194
BanII GRGCYC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 107
BciT130I CCWGG 2 cut(s) 9, 78
BcuI ACTAGT 1 cut(s) 110
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 31
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme1390I CCNGG 2 cut(s) 9, 78
BmrFI CCNGG 2 cut(s) 9, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse3DI GCAATG 1 cut(s) 93
BseBI CCWGG 2 cut(s) 9, 78
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMI GCAATG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 107
BseYI CCCAGC 2 cut(s) 50, 140
BsgI GTGCAG 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 91
BspACI CCGC 1 cut(s) 65
BspMI ACCTGC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 93
Bst2UI CCWGG 2 cut(s) 9, 78
Bst4CI ACNGT 1 cut(s) 42
BstENI CCTNNNNNAGG 1 cut(s) 27
BstMWI GCNNNNNNNGC 3 cut(s) 56, 95, 137
BstNI CCWGG 2 cut(s) 9, 78
BstSCI CCNGG 2 cut(s) 7, 76
BstSFI CTRYAG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 107
BstXI CCANNNNNNTGG 1 cut(s) 100
BtsIMutI CAGTG 2 cut(s) 38, 123
BveI ACCTGC 1 cut(s) 31
CviAII CATG 1 cut(s) 60
CviJI RGCY 5 cut(s) 50, 89, 120, 140, 158
CviKI_1 RGCY 5 cut(s) 50, 89, 120, 140, 158
Ecl136II GAGCTC 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 2 cut(s) 48, 147
EcoICRI GAGCTC 1 cut(s) 89
EcoNI CCTNNNNNAGG 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 7, 76
EcoT38I GRGCYC 1 cut(s) 91
FaeI CATG 1 cut(s) 63
FaiI YATR 5 cut(s) 20, 47, 61, 116, 180
FatI CATG 1 cut(s) 59
Fnu4HI GCNGC 1 cut(s) 121
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 121
FspBI CTAG 1 cut(s) 111
GluI GCNGC 1 cut(s) 121
GsaI CCCAGC 2 cut(s) 54, 144
Hin1II CATG 1 cut(s) 63
HphI GGTGA 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4V TGCA 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 95, 137
Hsp92II CATG 1 cut(s) 63
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 6 cut(s) 21, 36, 36, 63, 90, 126
Lsp1109I GCAGC 1 cut(s) 107
MaeI CTAG 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 1 cut(s) 165
MseI TTAA 3 cut(s) 69, 134, 161
MslI CAYNNNNRTG 2 cut(s) 98, 177
MspR9I CCNGG 2 cut(s) 9, 78
MvaI CCWGG 2 cut(s) 9, 78
MwoI GCNNNNNNNGC 3 cut(s) 56, 95, 137
NlaIII CATG 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 182
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 1 cut(s) 122
Psp124BI GAGCTC 1 cut(s) 91
Psp6I CCWGG 2 cut(s) 7, 76
PspFI CCCAGC 2 cut(s) 50, 140
PspGI CCWGG 2 cut(s) 7, 76
RseI CAYNNNNRTG 2 cut(s) 98, 177
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 3 cut(s) 69, 134, 161
SatI GCNGC 1 cut(s) 121
ScrFI CCNGG 2 cut(s) 9, 78
SduI GDGCHC 1 cut(s) 91
SetI ASST 6 cut(s) 25, 34, 52, 91, 122, 142
SfcI CTRYAG 1 cut(s) 45
SmiMI CAYNNNNRTG 2 cut(s) 98, 177
SpeI ACTAGT 1 cut(s) 110
Sse9I AATT 1 cut(s) 165
SsiI CCGC 1 cut(s) 65
SspMI CTAG 1 cut(s) 111
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 2 cut(s) 7, 76
TaaI ACNGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 85
TasI AATT 1 cut(s) 165
Tru1I TTAA 3 cut(s) 69, 134, 161
Tru9I TTAA 3 cut(s) 69, 134, 161
TscAI CASTG 2 cut(s) 45, 130
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 120
Tsp45I GTSAC 1 cut(s) 182
TspRI CASTG 2 cut(s) 45, 130
XagI CCTNNNNNAGG 1 cut(s) 27
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.