Rmu_sc0008209.1_g000010

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008209.1
OG0000686
Physical Location & Seq
Reverse (-)
29626 .. 31363
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008209.1_g000010.1.cds

Sequence Viewer

Length: 684 bp
atgtttcccggtatcagcatacctgctgaaggtttaccatcgtttatggctggggaagcatgggcggttaaagttccaggaaatccagctcccattgctgtgggaactactactatgagttgcactgaagcattaaaagctggattgcgtggaaaagccttaaaaattgctcactattatggtgacttactttgggaatcagttgagggcccttatgtgccaaatgcaggtttcttagaagatgctgtttttgaggatccaacattgtcatcagctcaaatttctgcttcatttgatggtgcaaatgatggatcacaggatcaactgaatggcattgatgatgaggaaatggggcaacatgttgatgttgctgatgtgaagtctgaaccaagtgatctgaagctaacagatgatgattctgctaatcagtcgactggggagaatcagcatcctctttctgccgaggatgtggacatgcttttggaaaaatgccttttgcaagcattgcatacaacagtcaaagacaaagaccttcccatgcccggaagcactctatggtttggtaagaaggggctggaggttctggttcaaggtggagtgattgagaatctggcaaaacacttgattgaacaatatgggatcccaaagagatacattgaggttcttgacaaaacaaggagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

227

Amino Acids

24.44

Weight (kDa)

4.5

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 31, 218
AccI GTMKAC 1 cut(s) 431
AciI CCGC 1 cut(s) 65
AclWI GGATC 6 cut(s) 251, 264, 319, 327, 634, 647
AcsI RAATTY 1 cut(s) 279
AcuI CTGAAG 3 cut(s) 48, 147, 419
AfiI CCNNNNNNNGG 3 cut(s) 29, 227, 542
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 2 cut(s) 590, 629
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 4 cut(s) 89, 140, 275, 403
AluI AGCT 4 cut(s) 89, 140, 275, 403
AlwI GGATC 6 cut(s) 251, 264, 319, 327, 634, 647
AoxI GGCC 1 cut(s) 208
ApaI GGGCCC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 208, 209
AsuC2I CCSGG 2 cut(s) 9, 543
AsuHPI GGTGA 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 212
BamHI GGATCC 2 cut(s) 256, 639
BanII GRGCYC 1 cut(s) 212
BccI CCATC 3 cut(s) 46, 290, 302
BciT130I CCWGG 1 cut(s) 78
BcnI CCSGG 2 cut(s) 9, 543
BfuAI ACCTGC 2 cut(s) 31, 218
Bme1390I CCNGG 3 cut(s) 9, 78, 543
BmgT120I GGNCC 2 cut(s) 208, 209
BmiI GGNNCC 3 cut(s) 210, 258, 641
BmrFI CCNGG 3 cut(s) 9, 78, 543
BmrI ACTGGG 1 cut(s) 444
BmsI GCATC 2 cut(s) 232, 457
BmuI ACTGGG 1 cut(s) 444
BpmI CTGGAG 1 cut(s) 596
BpuMI CCSGG 2 cut(s) 9, 543
BsaJI CCNNGG 1 cut(s) 462
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 227, 542
Bse1I ACTGG 1 cut(s) 439
Bse3DI GCAATG 2 cut(s) 93, 503
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 462
BseGI GGATG 2 cut(s) 448, 472
BseLI CCNNNNNNNGG 3 cut(s) 29, 227, 542
BseMI GCAATG 2 cut(s) 93, 503
BseNI ACTGG 1 cut(s) 439
BseSI GKGCMC 1 cut(s) 212
BseYI CCCAGC 1 cut(s) 50
BshFI GGCC 1 cut(s) 210
BsiSI CCGG 2 cut(s) 9, 543
BslI CCNNNNNNNGG 3 cut(s) 29, 227, 542
BsnI GGCC 1 cut(s) 210
Bsp120I GGGCCC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 5 cut(s) 256, 311, 319, 394, 639
BspACI CCGC 1 cut(s) 65
BspANI GGCC 1 cut(s) 210
BspLI GGNNCC 3 cut(s) 210, 258, 641
BspMI ACCTGC 2 cut(s) 31, 218
BspPI GGATC 6 cut(s) 251, 264, 319, 327, 634, 647
BsrDI GCAATG 2 cut(s) 93, 503
BsrI ACTGG 1 cut(s) 439
BssECI CCNNGG 1 cut(s) 462
BssMI GATC 5 cut(s) 256, 311, 319, 394, 639
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 517
BstAPI GCANNNNNTGC 1 cut(s) 505
BstC8I GCNNGC 1 cut(s) 501
BstDEI CTNAG 1 cut(s) 235
BstENI CCTNNNNNAGG 1 cut(s) 27
BstF5I GGATG 2 cut(s) 448, 472
BstKTI GATC 5 cut(s) 259, 314, 322, 397, 642
BstMBI GATC 5 cut(s) 256, 311, 319, 394, 639
BstMWI GCNNNNNNNGC 4 cut(s) 56, 95, 137, 505
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 2 cut(s) 362, 478
BstSCI CCNGG 3 cut(s) 7, 76, 541
BstSLI GKGCMC 1 cut(s) 212
BstX2I RGATCY 2 cut(s) 256, 639
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 2 cut(s) 256, 639
BsuRI GGCC 1 cut(s) 210
BtsCI GGATG 2 cut(s) 448, 472
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 2 cut(s) 31, 218
Cac8I GCNNGC 1 cut(s) 501
Cfr13I GGNCC 2 cut(s) 208, 209
CviAII CATG 4 cut(s) 60, 359, 475, 538
CviJI RGCY 8 cut(s) 50, 89, 140, 158, 210, 275, 403, 574
CviKI_1 RGCY 8 cut(s) 50, 89, 140, 158, 210, 275, 403, 574
DdeI CTNAG 1 cut(s) 235
DpnI GATC 5 cut(s) 258, 313, 321, 396, 641
DpnII GATC 5 cut(s) 256, 311, 319, 394, 639
Eco24I GRGCYC 1 cut(s) 212
Eco57I CTGAAG 3 cut(s) 48, 147, 419
EcoNI CCTNNNNNAGG 1 cut(s) 27
EcoO109I RGGNCCY 2 cut(s) 208, 209
EcoRII CCWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 212
FaeI CATG 4 cut(s) 63, 362, 478, 541
FatI CATG 4 cut(s) 59, 358, 474, 537
FblI GTMKAC 1 cut(s) 431
FokI GGATG 2 cut(s) 435, 479
FriOI GRGCYC 1 cut(s) 212
GsaI CCCAGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 596
HaeIII GGCC 1 cut(s) 210
HapII CCGG 2 cut(s) 9, 543
Hin1II CATG 4 cut(s) 63, 362, 478, 541
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 4 cut(s) 197, 416, 442, 607
HpaII CCGG 2 cut(s) 9, 543
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 3 cut(s) 35, 432, 472
Hpy188I TCNGA 2 cut(s) 385, 399
Hpy188III TCNNGA 1 cut(s) 665
Hpy8I GTNNAC 3 cut(s) 35, 432, 472
HpyAV CCTTC 3 cut(s) 23, 542, 562
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4V TGCA 5 cut(s) 123, 227, 302, 499, 508
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 95, 137, 505
HpyF3I CTNAG 1 cut(s) 235
Hsp92II CATG 4 cut(s) 63, 362, 478, 541
Kzo9I GATC 5 cut(s) 256, 311, 319, 394, 639
LmnI GCTCC 1 cut(s) 94
LweI GCATC 2 cut(s) 232, 457
MaeIII GTNAC 1 cut(s) 182
MalI GATC 5 cut(s) 258, 313, 321, 396, 641
MboI GATC 5 cut(s) 256, 311, 319, 394, 639
MboII GAAGA 1 cut(s) 251
MflI RGATCY 2 cut(s) 256, 639
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 2 cut(s) 165, 279
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 7 cut(s) 199, 247, 337, 457, 462, 571, 652
MseI TTAA 3 cut(s) 69, 134, 161
MslI CAYNNNNRTG 3 cut(s) 98, 177, 363
MspI CCGG 2 cut(s) 9, 543
MspR9I CCNGG 3 cut(s) 9, 78, 543
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 4 cut(s) 56, 95, 137, 505
NciI CCSGG 2 cut(s) 9, 543
NdeII GATC 5 cut(s) 256, 311, 319, 394, 639
NlaIII CATG 4 cut(s) 63, 362, 478, 541
NlaIV GGNNCC 3 cut(s) 210, 258, 641
NmeAIII GCCGAG 1 cut(s) 487
NmuCI GTSAC 1 cut(s) 182
NspI RCATGY 2 cut(s) 362, 478
PciI ACATGT 1 cut(s) 358
PfeI GAWTC 4 cut(s) 197, 416, 442, 607
PfoI TCCNGGA 1 cut(s) 76
PscI ACATGT 1 cut(s) 358
Psp6I CCWGG 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 3 cut(s) 210, 258, 641
PspOMI GGGCCC 1 cut(s) 208
PspPI GGNCC 2 cut(s) 208, 209
PsuI RGATCY 2 cut(s) 256, 639
RseI CAYNNNNRTG 3 cut(s) 98, 177, 363
SalI GTCGAC 1 cut(s) 430
SaqAI TTAA 3 cut(s) 69, 134, 161
Sau3AI GATC 5 cut(s) 256, 311, 319, 394, 639
Sau96I GGNCC 2 cut(s) 208, 209
ScrFI CCNGG 3 cut(s) 9, 78, 543
SduI GDGCHC 1 cut(s) 212
SfaNI GCATC 2 cut(s) 232, 457
SmiMI CAYNNNNRTG 3 cut(s) 98, 177, 363
Sse9I AATT 2 cut(s) 165, 279
SsiI CCGC 1 cut(s) 65
StyD4I CCNGG 3 cut(s) 7, 76, 541
TaaI ACNGT 1 cut(s) 517
TaqI TCGA 1 cut(s) 431
TasI AATT 2 cut(s) 165, 279
TfiI GAWTC 4 cut(s) 197, 416, 442, 607
Tru1I TTAA 3 cut(s) 69, 134, 161
Tru9I TTAA 3 cut(s) 69, 134, 161
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 279
TspRI CASTG 1 cut(s) 130
XagI CCTNNNNNAGG 1 cut(s) 27
XapI RAATTY 1 cut(s) 279
XceI RCATGY 2 cut(s) 362, 478
XmiI GTMKAC 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.