RchiOBHm_Chr6g0249861

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000686
Physical Location & Seq
Reverse (-)
5659905 .. 5660655
751 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22398

Sequence Viewer

Length: 423 bp
ATGTTTCCCGGTATCAGCATACCTGCTGAAGGTTTACCATCGTTTATGGCTGGGGAAGCATGGGCGGTTAAAGTTCCAGGAAATCCAGCTCCCATTGCTGTGGGAACTACTACTATGAGTTGCACTGAAGCATTAAAAGCTGGATTGCCTGGAAAAGCCTTAAAAATTGCTCACTATTATGGTGACTTACTTTGGGAATCAGTTGAGGGCCCTTATGTGCCAAATGCAGGTTTCTTAGAAGATGCTGTTTTTGAGGATCCAACATTGTCATCAGCTCAAATTTCTGCTTCATTTGATGGTGCAAATGATGGATCACAGGATCAACTGAATGGCATTGATGATGAGGAAATGGGGCAACATGTTGATGTTGCTGATGTGAAGTCTGAACCAAGTTCTGCTTCGGTTGCATTGCTGAGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

140

Amino Acids

14.55

Weight (kDa)

4.17

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUA_elF2D PF26292 1 - 62 3.6e-15 elF2D, PUA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 31, 218
AciI CCGC 1 cut(s) 65
AclWI GGATC 4 cut(s) 251, 264, 319, 327
AcsI RAATTY 1 cut(s) 279
AcuI CTGAAG 2 cut(s) 48, 147
AfiI CCNNNNNNNGG 2 cut(s) 29, 227
AflIII ACRYGT 1 cut(s) 358
AjnI CCWGG 2 cut(s) 76, 148
AjuI GAANNNNNNNTTGG 2 cut(s) 382, 414
AluBI AGCT 3 cut(s) 89, 140, 275
AluI AGCT 3 cut(s) 89, 140, 275
AlwI GGATC 4 cut(s) 251, 264, 319, 327
AoxI GGCC 1 cut(s) 208
ApaI GGGCCC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 208, 209
AsuC2I CCSGG 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 212
BamHI GGATCC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 212
BbvCI CCTCAGC 1 cut(s) 413
BccI CCATC 3 cut(s) 46, 290, 302
BciT130I CCWGG 2 cut(s) 78, 150
BcnI CCSGG 1 cut(s) 9
BfuAI ACCTGC 2 cut(s) 31, 218
Bme1390I CCNGG 3 cut(s) 9, 78, 150
BmgT120I GGNCC 2 cut(s) 208, 209
BmiI GGNNCC 2 cut(s) 210, 258
BmrFI CCNGG 3 cut(s) 9, 78, 150
BmsI GCATC 1 cut(s) 232
Bpu10I CCTNAGC 1 cut(s) 413
BpuMI CCSGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 227
Bse3DI GCAATG 2 cut(s) 93, 407
BseBI CCWGG 2 cut(s) 78, 150
BseLI CCNNNNNNNGG 2 cut(s) 29, 227
BseMI GCAATG 2 cut(s) 93, 407
BseMII CTCAG 1 cut(s) 404
BseSI GKGCMC 1 cut(s) 212
BseYI CCCAGC 1 cut(s) 50
BshFI GGCC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 2 cut(s) 29, 227
BsnI GGCC 1 cut(s) 210
Bsp120I GGGCCC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 3 cut(s) 256, 311, 319
BspACI CCGC 1 cut(s) 65
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 405
BspLI GGNNCC 2 cut(s) 210, 258
BspMI ACCTGC 2 cut(s) 31, 218
BspPI GGATC 4 cut(s) 251, 264, 319, 327
BsrDI GCAATG 2 cut(s) 93, 407
BssMI GATC 3 cut(s) 256, 311, 319
Bst2UI CCWGG 2 cut(s) 78, 150
BstDEI CTNAG 2 cut(s) 235, 413
BstENI CCTNNNNNAGG 1 cut(s) 27
BstKTI GATC 3 cut(s) 259, 314, 322
BstMBI GATC 3 cut(s) 256, 311, 319
BstMWI GCNNNNNNNGC 4 cut(s) 56, 95, 137, 404
BstNI CCWGG 2 cut(s) 78, 150
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 3 cut(s) 7, 76, 148
BstSLI GKGCMC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 2 cut(s) 31, 218
Cfr13I GGNCC 2 cut(s) 208, 209
CviAII CATG 2 cut(s) 60, 359
CviJI RGCY 6 cut(s) 50, 89, 140, 158, 210, 275
CviKI_1 RGCY 6 cut(s) 50, 89, 140, 158, 210, 275
DdeI CTNAG 2 cut(s) 235, 413
DpnI GATC 3 cut(s) 258, 313, 321
DpnII GATC 3 cut(s) 256, 311, 319
Eco24I GRGCYC 1 cut(s) 212
Eco57I CTGAAG 2 cut(s) 48, 147
EcoNI CCTNNNNNAGG 1 cut(s) 27
EcoO109I RGGNCCY 2 cut(s) 208, 209
EcoRII CCWGG 2 cut(s) 76, 148
EcoT38I GRGCYC 1 cut(s) 212
FaeI CATG 2 cut(s) 63, 362
FaiI YATR 7 cut(s) 20, 47, 61, 116, 180, 216, 360
FalI AAGNNNNNCTT 2 cut(s) 382, 414
FatI CATG 2 cut(s) 59, 358
FriOI GRGCYC 1 cut(s) 212
GsaI CCCAGC 1 cut(s) 54
HaeIII GGCC 1 cut(s) 210
HapII CCGG 1 cut(s) 9
Hin1II CATG 2 cut(s) 63, 362
HinfI GANTC 1 cut(s) 197
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 385
Hpy8I GTNNAC 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 23
HpyCH4V TGCA 4 cut(s) 123, 227, 302, 407
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 95, 137, 404
HpyF3I CTNAG 2 cut(s) 235, 413
Hsp92II CATG 2 cut(s) 63, 362
Kzo9I GATC 3 cut(s) 256, 311, 319
LmnI GCTCC 1 cut(s) 94
LweI GCATC 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 182
MalI GATC 3 cut(s) 258, 313, 321
MboI GATC 3 cut(s) 256, 311, 319
MboII GAAGA 1 cut(s) 251
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 2 cut(s) 165, 279
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 4 cut(s) 199, 247, 337, 408
MseI TTAA 3 cut(s) 69, 134, 161
MslI CAYNNNNRTG 3 cut(s) 98, 177, 363
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 3 cut(s) 9, 78, 150
MvaI CCWGG 2 cut(s) 78, 150
MwoI GCNNNNNNNGC 4 cut(s) 56, 95, 137, 404
NciI CCSGG 1 cut(s) 9
NdeII GATC 3 cut(s) 256, 311, 319
NlaIII CATG 2 cut(s) 63, 362
NlaIV GGNNCC 2 cut(s) 210, 258
NmuCI GTSAC 1 cut(s) 182
NspI RCATGY 1 cut(s) 362
PciI ACATGT 1 cut(s) 358
PfeI GAWTC 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 76
PscI ACATGT 1 cut(s) 358
Psp6I CCWGG 2 cut(s) 76, 148
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 2 cut(s) 76, 148
PspN4I GGNNCC 2 cut(s) 210, 258
PspOMI GGGCCC 1 cut(s) 208
PspPI GGNCC 2 cut(s) 208, 209
PsuI RGATCY 1 cut(s) 256
RseI CAYNNNNRTG 3 cut(s) 98, 177, 363
SaqAI TTAA 3 cut(s) 69, 134, 161
Sau3AI GATC 3 cut(s) 256, 311, 319
Sau96I GGNCC 2 cut(s) 208, 209
ScrFI CCNGG 3 cut(s) 9, 78, 150
SduI GDGCHC 1 cut(s) 212
SetI ASST 6 cut(s) 25, 34, 91, 142, 232, 277
SfaNI GCATC 1 cut(s) 232
SmiMI CAYNNNNRTG 3 cut(s) 98, 177, 363
Sse9I AATT 2 cut(s) 165, 279
SsiI CCGC 1 cut(s) 65
StyD4I CCNGG 3 cut(s) 7, 76, 148
TasI AATT 2 cut(s) 165, 279
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 3 cut(s) 69, 134, 161
Tru9I TTAA 3 cut(s) 69, 134, 161
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 279
TspRI CASTG 1 cut(s) 130
XagI CCTNNNNNAGG 1 cut(s) 27
XapI RAATTY 1 cut(s) 279
XceI RCATGY 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.