Rw6G000600

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000686
Physical Location & Seq
Reverse (-)
1057907 .. 1059615
1709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G000600.1

Sequence Viewer

Length: 915 bp
ATGGGCGTGGCAAAGAAATTTTTCCCACAGGTGGGAACTACTACTATGAGTTGCACTGAAGCATTAAAAGCTGGATTGCGTGGAAAAGCCTTAAAAATTGCTCACTATTATGGTGACTTACTTTGGGAATCAGTTGAGGGCCCTTATGTGCCAAATGCAGGTTTCTTAGAAGATGCTGTTTTTGAGGATCCTACCTTGTCATCAGCTCAAATTTCTGATTCATATAATGGTGCAAATGATGGATCACATGATCAACTGAATGGCATTGATGATAAGGAAATGGGGCAACATGTTGATGTTGCTGATGTGCAGTCAGAACGAAGTTCTGCTTCGGTTGCACCGATTGATGCTAGGAATGAGATTGCTGAGGAAGTAACTGCAAATGGAGGTGATCTGAAGCCAACAGATGATGATTCTGCTAATCAGTCGACTGGGGAGGATCAACATCCTCTTTCTGCCGAGGATGTGGACATGCTTTTGGAAAAATGCCTTTTGCAAGCATTGCATACAACTGTCAAAGACAAAGACCTTCCCATGCCCGGAAGCACTCTATGGTCAAACTATGTTTTACCTTGTAGGCCTTCAGGCATCACACTAGACATCAAGAAATCATCACACAAGAAATTATCAAAGTGGTTACAAGCTAAATGTTCTACAGGATTGGTGCGTTATGCTTTCATTTTCGTCTTTCTCATAAGTGACCACTTTTTTAGTTTTAACCTAGTCATTTTGAGGGTTAGCTATATTGGTATTTTTGTAGTTTTGATTCTGAACACATTCTGCACATCCTTATGGTGTTGTCAGCGGTCAGCACCTTTATGTATTAATGCATGGTTTTGTTGCTCTGTATTCTTGACAATATTTGAAAATTTTATTTTTCTTTTATATTTCTACCAATTACTGATCAAGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

304

Amino Acids

33.7

Weight (kDa)

4.97

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_eIF2D PF25304 157 - 223 2.3e-25 eIF2D winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 428
AciI CCGC 1 cut(s) 805
AclWI GGATC 4 cut(s) 182, 195, 250, 447
AcsI RAATTY 3 cut(s) 17, 210, 868
AcuI CTGAAG 3 cut(s) 78, 416, 567
AfiI CCNNNNNNNGG 4 cut(s) 31, 32, 158, 539
AflIII ACRYGT 1 cut(s) 289
AgsI TTSAA 1 cut(s) 866
AluBI AGCT 4 cut(s) 71, 206, 644, 741
AluI AGCT 4 cut(s) 71, 206, 644, 741
AlwI GGATC 4 cut(s) 182, 195, 250, 447
AoxI GGCC 2 cut(s) 139, 578
ApaI GGGCCC 1 cut(s) 143
ApoI RAATTY 3 cut(s) 17, 210, 868
AseI ATTAAT 1 cut(s) 825
Asp700I GAANNNNTTC 2 cut(s) 20, 776
AspS9I GGNCC 2 cut(s) 139, 140
AsuC2I CCSGG 1 cut(s) 540
AsuHPI GGTGA 2 cut(s) 125, 401
BaeGI GKGCMC 1 cut(s) 143
BamHI GGATCC 1 cut(s) 187
BanII GRGCYC 1 cut(s) 143
BbvCI CCTCAGC 1 cut(s) 366
BccI CCATC 1 cut(s) 233
BclI TGATCA 2 cut(s) 250, 903
BcnI CCSGG 1 cut(s) 540
BfaI CTAG 3 cut(s) 351, 596, 722
BfmI CTRYAG 1 cut(s) 654
BfuAI ACCTGC 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 540
BmgT120I GGNCC 2 cut(s) 139, 140
BmiI GGNNCC 2 cut(s) 141, 189
BmrFI CCNGG 1 cut(s) 540
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 3 cut(s) 163, 337, 597
BmuI ACTGGG 1 cut(s) 441
Bpu10I CCTNAGC 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 540
BsaBI GATNNNNATC 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 459
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 32, 158, 539
Bse1I ACTGG 1 cut(s) 436
Bse3DI GCAATG 1 cut(s) 500
Bse8I GATNNNNATC 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 459
BseGI GGATG 3 cut(s) 445, 469, 785
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 4 cut(s) 31, 32, 158, 539
BseMI GCAATG 1 cut(s) 500
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 436
BseSI GKGCMC 1 cut(s) 143
BsgI GTGCAG 2 cut(s) 329, 766
BshFI GGCC 2 cut(s) 141, 580
BsiSI CCGG 1 cut(s) 540
BslI CCNNNNNNNGG 4 cut(s) 31, 32, 158, 539
BsnI GGCC 2 cut(s) 141, 580
Bsp120I GGGCCC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 6 cut(s) 187, 242, 250, 391, 439, 903
BspACI CCGC 1 cut(s) 805
BspANI GGCC 2 cut(s) 141, 580
BspCNI CTCAG 1 cut(s) 358
BspLI GGNNCC 2 cut(s) 141, 189
BspMI ACCTGC 1 cut(s) 149
BspPI GGATC 4 cut(s) 182, 195, 250, 447
BsrDI GCAATG 1 cut(s) 500
BsrI ACTGG 1 cut(s) 436
BssECI CCNNGG 1 cut(s) 459
BssMI GATC 6 cut(s) 187, 242, 250, 391, 439, 903
Bst4CI ACNGT 1 cut(s) 514
BstAPI GCANNNNNTGC 1 cut(s) 502
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 2 cut(s) 166, 366
BstF5I GGATG 3 cut(s) 445, 469, 785
BstKTI GATC 6 cut(s) 190, 245, 253, 394, 442, 906
BstMBI GATC 6 cut(s) 187, 242, 250, 391, 439, 903
BstMWI GCNNNNNNNGC 3 cut(s) 68, 335, 502
BstNSI RCATGY 2 cut(s) 293, 475
BstSCI CCNGG 1 cut(s) 538
BstSFI CTRYAG 1 cut(s) 654
BstSLI GKGCMC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BsuRI GGCC 2 cut(s) 141, 580
BtsCI GGATG 3 cut(s) 445, 469, 785
BtsIMutI CAGTG 1 cut(s) 54
BveI ACCTGC 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 498
Cfr13I GGNCC 2 cut(s) 139, 140
CviAII CATG 5 cut(s) 248, 290, 472, 535, 831
CviJI RGCY 8 cut(s) 71, 89, 141, 206, 400, 580, 644, 741
CviKI_1 RGCY 8 cut(s) 71, 89, 141, 206, 400, 580, 644, 741
DdeI CTNAG 2 cut(s) 166, 366
DpnI GATC 6 cut(s) 189, 244, 252, 393, 441, 905
DpnII GATC 6 cut(s) 187, 242, 250, 391, 439, 903
Eco147I AGGCCT 1 cut(s) 580
Eco24I GRGCYC 1 cut(s) 143
Eco57I CTGAAG 3 cut(s) 78, 416, 567
EcoO109I RGGNCCY 2 cut(s) 139, 140
EcoT22I ATGCAT 1 cut(s) 832
EcoT38I GRGCYC 1 cut(s) 143
FaeI CATG 5 cut(s) 251, 293, 475, 538, 834
FalI AAGNNNNNCTT 2 cut(s) 313, 345
FatI CATG 5 cut(s) 247, 289, 471, 534, 830
FbaI TGATCA 2 cut(s) 250, 903
FblI GTMKAC 1 cut(s) 428
FokI GGATG 3 cut(s) 432, 476, 772
FriOI GRGCYC 1 cut(s) 143
FspBI CTAG 3 cut(s) 351, 596, 722
HaeIII GGCC 2 cut(s) 141, 580
HapII CCGG 1 cut(s) 540
Hin1II CATG 5 cut(s) 251, 293, 475, 538, 834
HincII GTYRAC 1 cut(s) 429
HindII GTYRAC 1 cut(s) 429
HinfI GANTC 4 cut(s) 128, 218, 413, 766
HpaII CCGG 1 cut(s) 540
HphI GGTGA 2 cut(s) 125, 401
Hpy166II GTNNAC 2 cut(s) 429, 469
Hpy188I TCNGA 4 cut(s) 217, 316, 396, 771
Hpy188III TCNNGA 2 cut(s) 604, 853
Hpy8I GTNNAC 2 cut(s) 429, 469
HpyAV CCTTC 2 cut(s) 539, 591
HpyCH4III ACNGT 1 cut(s) 514
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 335, 502
HpyF3I CTNAG 2 cut(s) 166, 366
Hsp92II CATG 5 cut(s) 251, 293, 475, 538, 834
Ksp22I TGATCA 2 cut(s) 250, 903
Kzo9I GATC 6 cut(s) 187, 242, 250, 391, 439, 903
LpnPI CCDG 7 cut(s) 14, 57, 144, 417, 553, 570, 642
LweI GCATC 3 cut(s) 163, 337, 597
MaeI CTAG 3 cut(s) 351, 596, 722
MaeIII GTNAC 4 cut(s) 113, 373, 636, 698
MalI GATC 6 cut(s) 189, 244, 252, 393, 441, 905
MboI GATC 6 cut(s) 187, 242, 250, 391, 439, 903
MboII GAAGA 1 cut(s) 182
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 6 cut(s) 17, 96, 210, 623, 868, 896
MnlI CCTC 8 cut(s) 130, 178, 361, 380, 430, 454, 459, 726
Mph1103I ATGCAT 1 cut(s) 832
MroXI GAANNNNTTC 2 cut(s) 20, 776
MseI TTAA 4 cut(s) 65, 92, 717, 825
MslI CAYNNNNRTG 4 cut(s) 108, 294, 790, 817
MspA1I CMGCKG 1 cut(s) 805
MspI CCGG 1 cut(s) 540
MspR9I CCNGG 1 cut(s) 540
MwoI GCNNNNNNNGC 3 cut(s) 68, 335, 502
NciI CCSGG 1 cut(s) 540
NdeII GATC 6 cut(s) 187, 242, 250, 391, 439, 903
NlaIII CATG 5 cut(s) 251, 293, 475, 538, 834
NlaIV GGNNCC 2 cut(s) 141, 189
NmeAIII GCCGAG 1 cut(s) 484
NmuCI GTSAC 2 cut(s) 113, 698
NsiI ATGCAT 1 cut(s) 832
NspI RCATGY 2 cut(s) 293, 475
PceI AGGCCT 1 cut(s) 580
PciI ACATGT 1 cut(s) 289
PcsI WCGNNNNNNNCGW 1 cut(s) 338
PdmI GAANNNNTTC 2 cut(s) 20, 776
PfeI GAWTC 4 cut(s) 128, 218, 413, 766
PscI ACATGT 1 cut(s) 289
PshBI ATTAAT 1 cut(s) 825
PspN4I GGNNCC 2 cut(s) 141, 189
PspOMI GGGCCC 1 cut(s) 139
PspPI GGNCC 2 cut(s) 139, 140
PsuI RGATCY 1 cut(s) 187
RseI CAYNNNNRTG 4 cut(s) 108, 294, 790, 817
SalI GTCGAC 1 cut(s) 427
SaqAI TTAA 4 cut(s) 65, 92, 717, 825
Sau3AI GATC 6 cut(s) 187, 242, 250, 391, 439, 903
Sau96I GGNCC 2 cut(s) 139, 140
ScrFI CCNGG 1 cut(s) 540
SduI GDGCHC 1 cut(s) 143
SfaNI GCATC 3 cut(s) 163, 337, 597
SfcI CTRYAG 1 cut(s) 654
SmiMI CAYNNNNRTG 4 cut(s) 108, 294, 790, 817
Sse9I AATT 6 cut(s) 17, 96, 210, 623, 868, 896
SseBI AGGCCT 1 cut(s) 580
SsiI CCGC 1 cut(s) 805
SspI AATATT 1 cut(s) 861
SspMI CTAG 3 cut(s) 351, 596, 722
StuI AGGCCT 1 cut(s) 580
StyD4I CCNGG 1 cut(s) 538
TaaI ACNGT 1 cut(s) 514
TaqI TCGA 1 cut(s) 428
TasI AATT 6 cut(s) 17, 96, 210, 623, 868, 896
TfiI GAWTC 4 cut(s) 128, 218, 413, 766
Tru1I TTAA 4 cut(s) 65, 92, 717, 825
Tru9I TTAA 4 cut(s) 65, 92, 717, 825
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 2 cut(s) 113, 698
Tsp45I GTSAC 2 cut(s) 113, 698
TspDTI ATGAA 2 cut(s) 210, 667
TspRI CASTG 1 cut(s) 61
VspI ATTAAT 1 cut(s) 825
XapI RAATTY 3 cut(s) 17, 210, 868
XceI RCATGY 2 cut(s) 293, 475
XmiI GTMKAC 1 cut(s) 428
XmnI GAANNNNTTC 2 cut(s) 20, 776
XspI CTAG 3 cut(s) 351, 596, 722
Zsp2I ATGCAT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.