RchiOBHm_Chr6g0250151

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000686
Physical Location & Seq
Reverse (-)
5831851 .. 5832385
535 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22424

Sequence Viewer

Length: 336 bp
ATGCTGAAAGGGGGCGAGGTTTCTCGATATGTTATTGGAGGGGCAGATTTGATGTTTCCCGGTATCAGCATACCTGCTGAAGGTTTACCATCGTTTATAGCTGGGGAAGCATGGGCGGTTAAAGTTCCAGGAAATCCAGCTCCCATTGCTGTGGGAACTACTACTATGAGTTGCACTGAAGCATTAAAAGCTGGATTGCGTGGAAAAGCCTTAAAAATTGCTCACTATTATGGTGACTTACTTTGGGAATCAGTTGAGGGCCCTTATGTGCCAAATGCAGGTTTCTTAGAAGATGCTGTTTTTGAGGATCCCACCTTGTCATCAGCTCAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

111

Amino Acids

11.57

Weight (kDa)

4.64

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUA_elF2D PF26292 6 - 79 3.5e-23 elF2D, PUA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 82, 269
AciI CCGC 1 cut(s) 116
AclWI GGATC 2 cut(s) 302, 315
AcuI CTGAAG 2 cut(s) 99, 198
AfiI CCNNNNNNNGG 2 cut(s) 80, 278
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 4 cut(s) 101, 140, 191, 326
AluI AGCT 4 cut(s) 101, 140, 191, 326
AlwI GGATC 2 cut(s) 302, 315
AoxI GGCC 1 cut(s) 259
ApaI GGGCCC 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 259, 260
AsuC2I CCSGG 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 263
BamHI GGATCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 263
BccI CCATC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 129
BcnI CCSGG 1 cut(s) 60
BfuAI ACCTGC 2 cut(s) 82, 269
Bme1390I CCNGG 2 cut(s) 60, 129
BmgT120I GGNCC 2 cut(s) 259, 260
BmiI GGNNCC 2 cut(s) 261, 309
BmrFI CCNGG 2 cut(s) 60, 129
BmsI GCATC 1 cut(s) 283
BpuMI CCSGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 278
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 80, 278
BseMI GCAATG 1 cut(s) 144
BseSI GKGCMC 1 cut(s) 263
BseYI CCCAGC 1 cut(s) 101
BshFI GGCC 1 cut(s) 261
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 80, 278
BsnI GGCC 1 cut(s) 261
Bsp120I GGGCCC 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 1 cut(s) 116
BspANI GGCC 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 261, 309
BspMI ACCTGC 2 cut(s) 82, 269
BspPI GGATC 2 cut(s) 302, 315
BsrDI GCAATG 1 cut(s) 144
BssMI GATC 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 286
BstENI CCTNNNNNAGG 1 cut(s) 78
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 3 cut(s) 107, 146, 188
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 58, 127
BstSLI GKGCMC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 151
BstYI RGATCY 1 cut(s) 307
BsuRI GGCC 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 174
BveI ACCTGC 2 cut(s) 82, 269
Cfr13I GGNCC 2 cut(s) 259, 260
CviAII CATG 1 cut(s) 111
CviJI RGCY 6 cut(s) 101, 140, 191, 209, 261, 326
CviKI_1 RGCY 6 cut(s) 101, 140, 191, 209, 261, 326
DdeI CTNAG 1 cut(s) 286
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 263
Eco57I CTGAAG 2 cut(s) 99, 198
EcoNI CCTNNNNNAGG 1 cut(s) 78
EcoO109I RGGNCCY 2 cut(s) 259, 260
EcoRII CCWGG 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 263
FaeI CATG 1 cut(s) 114
FaiI YATR 8 cut(s) 30, 71, 98, 112, 167, 231, 267, 334
FatI CATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 263
GsaI CCCAGC 1 cut(s) 105
HaeIII GGCC 1 cut(s) 261
HapII CCGG 1 cut(s) 60
Hin1II CATG 1 cut(s) 114
HinfI GANTC 1 cut(s) 248
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 86
Hpy188III TCNNGA 1 cut(s) 24
Hpy8I GTNNAC 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 74
HpyCH4V TGCA 2 cut(s) 174, 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 146, 188
HpyF3I CTNAG 1 cut(s) 286
Hsp92II CATG 1 cut(s) 114
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 8 cut(s) 73, 87, 87, 114, 141, 150, 177, 264
LweI GCATC 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 233
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 1 cut(s) 302
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 1 cut(s) 216
MnlI CCTC 4 cut(s) 10, 32, 250, 298
MseI TTAA 3 cut(s) 120, 185, 212
MslI CAYNNNNRTG 2 cut(s) 149, 228
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 2 cut(s) 60, 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 3 cut(s) 107, 146, 188
NciI CCSGG 1 cut(s) 60
NdeII GATC 1 cut(s) 307
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 2 cut(s) 261, 309
NmuCI GTSAC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 248
PfoI TCCNGGA 1 cut(s) 127
Psp6I CCWGG 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 101
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 261, 309
PspOMI GGGCCC 1 cut(s) 259
PspPI GGNCC 2 cut(s) 259, 260
PsuI RGATCY 1 cut(s) 307
RseI CAYNNNNRTG 2 cut(s) 149, 228
SaqAI TTAA 3 cut(s) 120, 185, 212
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 2 cut(s) 259, 260
ScrFI CCNGG 2 cut(s) 60, 129
SduI GDGCHC 1 cut(s) 263
SetI ASST 9 cut(s) 21, 76, 85, 103, 142, 193, 283, 317, 328
SfaNI GCATC 1 cut(s) 283
SmiMI CAYNNNNRTG 2 cut(s) 149, 228
Sse9I AATT 1 cut(s) 216
SsiI CCGC 1 cut(s) 116
StyD4I CCNGG 2 cut(s) 58, 127
TaqI TCGA 1 cut(s) 25
TasI AATT 1 cut(s) 216
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 3 cut(s) 120, 185, 212
Tru9I TTAA 3 cut(s) 120, 185, 212
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 233
TspRI CASTG 1 cut(s) 181
XagI CCTNNNNNAGG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.