Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006032.1

Orthogroup ID

OG0000686

Physical Location & Seq

Genomic Coordinates Reverse (-)

27942 .. 29638

Gene Structure 1697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006032.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgttcccgccggcgctgtccccgtggtgcgctccgattcgcaccctcgaacaagctactttgactgtcttcgatgaacttgaggacttcgaaaccgtcgtcgtactgccacggatatcgatgctccggcgcgaggcggtagttgacggagacgacgacggcggggagctcgcgagcgaggcgttgacagaagtcgtcaggctgtcaggggctgacaggaagaagctcaagaggaccgtcaaggaaagatttcccagagcttccgacgccgatgtcgatgctttgctccctcccaaggtccctgatatcttgccttctttcatgctgaaagggggcgaggtttctcgatatgttattggaggggcggatttgatgtttcctggtatcagcatacctgctgaaggtctaccatcatttatagctggggaagcatgggcggttaaagttccaggaaatccagctcccattgctgtgggaactactggtatgatcttcactgaagcattaaaagctgggttgcgtggaaaagccttaaaaattgctcactattatggtgacttactttggcaagtatctgtgggaattgacatagagatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SUI1

Protein Analysis

199

Amino Acids

21.41

Weight (kDa)

4.84

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71350
fragaria_vesca	FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica	MD10G1002600.v1.1
prunus_persica	Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata	RLG00000015543 RLG00000015548
rosa_multiflora	Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii	Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa	Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha	Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana	Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	403
AccI	GTMKAC	1 cut(s)	406
AccII	CGCG	2 cut(s)	132, 173
AciI	CCGC	5 cut(s)	8, 137, 162, 365, 437
AcuI	CTGAAG	2 cut(s)	420, 519
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	3 cut(s)	133, 295, 401
AjnI	CCWGG	2 cut(s)	379, 448
AluBI	AGCT	7 cut(s)	56, 169, 226, 260, 422, 461, 512
AluI	AGCT	7 cut(s)	56, 169, 226, 260, 422, 461, 512
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	144
AlwNI	CAGNNNCTG	1 cut(s)	212
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
Asp700I	GAANNNNTTC	1 cut(s)	249
AspLEI	GCGC	3 cut(s)	16, 32, 132
AspS9I	GGNCC	2 cut(s)	234, 298
AsuHPI	GGTGA	1 cut(s)	566
AsuII	TTCGAA	1 cut(s)	90
AvaII	GGWCC	2 cut(s)	234, 298
BanII	GRGCYC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	171
BccI	CCATC	1 cut(s)	418
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	2 cut(s)	381, 450
BcoDI	GTCTC	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	17
BfuAI	ACCTGC	1 cut(s)	403
Bme1390I	CCNGG	2 cut(s)	381, 450
Bme18I	GGWCC	2 cut(s)	234, 298
BmgT120I	GGNCC	2 cut(s)	234, 298
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	2 cut(s)	381, 450
BmsI	GCATC	2 cut(s)	111, 268
BoxI	GACNNNNGTC	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	61
Bpu14I	TTCGAA	1 cut(s)	90
BpuEI	CTTGAG	2 cut(s)	101, 212
Bsa29I	ATCGAT	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	23, 110, 294
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 295, 401
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	487
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	2 cut(s)	381, 450
BseCI	ATCGAT	1 cut(s)	119
BseDI	CCNNGG	3 cut(s)	23, 110, 294
BseLI	CCNNNNNNNGG	3 cut(s)	133, 295, 401
BseMI	GCAATG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	487
BseYI	CCCAGC	2 cut(s)	422, 512
Bsh1236I	CGCG	2 cut(s)	132, 173
BshVI	ATCGAT	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	11, 127
BslFI	GGGAC	2 cut(s)	4, 284
BslI	CCNNNNNNNGG	3 cut(s)	133, 295, 401
BsmAI	GTCTC	1 cut(s)	144
BsmBI	CGTCTC	1 cut(s)	144
BsmFI	GGGAC	2 cut(s)	4, 284
Bsp119I	TTCGAA	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	489
Bsp68I	TCGCGA	1 cut(s)	173
BspACI	CCGC	5 cut(s)	8, 137, 162, 365, 437
BspDI	ATCGAT	1 cut(s)	119
BspFNI	CGCG	2 cut(s)	132, 173
BspLI	GGNNCC	1 cut(s)	300
BspMI	ACCTGC	1 cut(s)	403
BspT104I	TTCGAA	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	465
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	487
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	3 cut(s)	23, 110, 294
BssMI	GATC	1 cut(s)	489
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	381, 450
Bst4CI	ACNGT	3 cut(s)	67, 97, 238
BstACI	GRCGYC	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	90
BstC8I	GCNNGC	3 cut(s)	12, 171, 175
BstDSI	CCRYGG	2 cut(s)	23, 110
BstENI	CCTNNNNNAGG	1 cut(s)	399
BstFNI	CGCG	2 cut(s)	132, 173
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	3 cut(s)	16, 32, 132
BstKTI	GATC	1 cut(s)	492
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	489
BstMWI	GCNNNNNNNGC	5 cut(s)	179, 266, 428, 467, 509
BstNI	CCWGG	2 cut(s)	381, 450
BstPAI	GACNNNNGTC	1 cut(s)	191
BstSCI	CCNGG	2 cut(s)	379, 448
BstUI	CGCG	2 cut(s)	132, 173
BstV2I	GAAGAC	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	472
Bsu15I	ATCGAT	1 cut(s)	119
BsuTUI	ATCGAT	1 cut(s)	119
BtgI	CCRYGG	2 cut(s)	23, 110
BtsIMutI	CAGTG	1 cut(s)	495
BtuMI	TCGCGA	1 cut(s)	173
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	3 cut(s)	12, 171, 175
CaiI	CAGNNNCTG	1 cut(s)	212
CfoI	GCGC	3 cut(s)	16, 32, 132
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	234, 298
ClaI	ATCGAT	1 cut(s)	119
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	2 cut(s)	322, 432
CviQI	GTAC	1 cut(s)	104
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	380
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	171
Eco32I	GATATC	2 cut(s)	117, 307
Eco47I	GGWCC	2 cut(s)	234, 298
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	2 cut(s)	420, 519
EcoICRI	GAGCTC	1 cut(s)	169
EcoNI	CCTNNNNNAGG	1 cut(s)	399
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	2 cut(s)	379, 448
EcoRV	GATATC	2 cut(s)	117, 307
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	294
Esp3I	CGTCTC	1 cut(s)	144
FaeI	CATG	2 cut(s)	325, 435
FaiI	YATR	9 cut(s)	323, 351, 392, 419, 433, 488, 552, 590, 598
FaqI	GGGAC	2 cut(s)	4, 284
FatI	CATG	2 cut(s)	321, 431
FauI	CCCGC	2 cut(s)	15, 155
FblI	GTMKAC	1 cut(s)	406
FriOI	GRGCYC	1 cut(s)	171
GlaI	GCGC	3 cut(s)	15, 31, 131
GsaI	CCCAGC	2 cut(s)	426, 516
HaeII	RGCGCY	1 cut(s)	17
HapII	CCGG	2 cut(s)	11, 127
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	3 cut(s)	16, 32, 132
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	325, 435
Hin6I	GCGC	3 cut(s)	14, 30, 130
HinP1I	GCGC	3 cut(s)	14, 30, 130
HincII	GTYRAC	2 cut(s)	145, 186
HindII	GTYRAC	2 cut(s)	145, 186
HinfI	GANTC	1 cut(s)	37
HpaII	CCGG	2 cut(s)	11, 127
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	3 cut(s)	145, 186, 407
Hpy188I	TCNGA	2 cut(s)	36, 265
Hpy188III	TCNNGA	3 cut(s)	172, 229, 345
Hpy8I	GTNNAC	3 cut(s)	145, 186, 407
Hpy99I	CGWCG	5 cut(s)	101, 104, 158, 161, 269
HpyAV	CCTTC	2 cut(s)	324, 395
HpyCH4III	ACNGT	3 cut(s)	67, 97, 238
HpyF10VI	GCNNNNNNNGC	5 cut(s)	179, 266, 428, 467, 509
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	325, 435
HspAI	GCGC	3 cut(s)	14, 30, 130
KroI	GCCGGC	1 cut(s)	10
KroNI	GCCGGC	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	489
LmnI	GCTCC	5 cut(s)	37, 129, 166, 291, 466
LweI	GCATC	2 cut(s)	111, 268
MaeIII	GTNAC	1 cut(s)	554
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	3 cut(s)	61, 232, 484
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	2 cut(s)	537, 582
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	8 cut(s)	56, 76, 127, 172, 225, 300, 331, 353
MreI	CGCCGGCG	1 cut(s)	10
MroNI	GCCGGC	1 cut(s)	10
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	3 cut(s)	441, 506, 533
MslI	CAYNNNNRTG	2 cut(s)	470, 549
MspI	CCGG	2 cut(s)	11, 127
MspR9I	CCNGG	2 cut(s)	381, 450
MvaI	CCWGG	2 cut(s)	381, 450
MvnI	CGCG	2 cut(s)	132, 173
MwoI	GCNNNNNNNGC	5 cut(s)	179, 266, 428, 467, 509
NaeI	GCCGGC	1 cut(s)	12
NdeII	GATC	1 cut(s)	489
NgoMIV	GCCGGC	1 cut(s)	10
NlaIII	CATG	2 cut(s)	325, 435
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	554
NruI	TCGCGA	1 cut(s)	173
NspV	TTCGAA	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	3 cut(s)	96, 153, 273
PdiI	GCCGGC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	37
PfoI	TCCNGGA	1 cut(s)	448
PpuMI	RGGWCCY	1 cut(s)	298
PshAI	GACNNNNGTC	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	379, 448
PspFI	CCCAGC	2 cut(s)	422, 512
PspGI	CCWGG	2 cut(s)	379, 448
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	234, 298
PspPPI	RGGWCCY	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	212
RruI	TCGCGA	1 cut(s)	173
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
RseI	CAYNNNNRTG	2 cut(s)	470, 549
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	441, 506, 533
Sau3AI	GATC	1 cut(s)	489
Sau96I	GGNCC	2 cut(s)	234, 298
ScrFI	CCNGG	2 cut(s)	381, 450
SduI	GDGCHC	1 cut(s)	171
SfaNI	GCATC	2 cut(s)	111, 268
SfuI	TTCGAA	1 cut(s)	90
SgrAI	CRCCGGYG	1 cut(s)	10
SinI	GGWCC	2 cut(s)	234, 298
SmiMI	CAYNNNNRTG	2 cut(s)	470, 549
SmlI	CTYRAG	2 cut(s)	80, 227
SmoI	CTYRAG	2 cut(s)	80, 227
Sse9I	AATT	2 cut(s)	537, 582
SsiI	CCGC	5 cut(s)	8, 137, 162, 365, 437
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	379, 448
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	3 cut(s)	67, 97, 238
TaqI	TCGA	6 cut(s)	48, 72, 90, 119, 276, 346
TasI	AATT	2 cut(s)	537, 582
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	3 cut(s)	441, 506, 533
Tru9I	TTAA	3 cut(s)	441, 506, 533
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	2 cut(s)	90, 310
TspGWI	ACGGA	2 cut(s)	127, 162
TspRI	CASTG	1 cut(s)	502
VpaK11BI	GGWCC	2 cut(s)	234, 298
XagI	CCTNNNNNAGG	1 cut(s)	399
XmiI	GTMKAC	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.