RLG00000015543

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000686
Physical Location & Seq
Forward (+)
67659563 .. 67665159
5597 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015543

Sequence Viewer

Length: 534 bp
ATGGCGAACAACGGAAACAAATGTAGGCCAGCTTCAGCTTCAGGCGAGCTTTACAGTGCTTCGGATGCCACTGACATTGTGTTTAAATATGTTGAAAAGGAAAACCTGGTTAAGCTGACAGATAAATCCATTGTGATTTTGGATGCGATATTGTGTGATGCACTGTTCAAGGGGGCCATAAAGAAAGGTTCAACGTACCCTACAGAAATTCATAAAAGAGACTTAGGAGCAGCATTTGTGAATCGGATGCAAGCCCATCACGTTGTGACAAGGGGAAATGACTCGGTTGTTCGTAAAGGTGGTTTGAAAACAGTCCAGATAATGACAGAAAGGCGGCAAGGTAATAAGAAAATGACCAAGTTATCAGGACTGGAAACATTTTTGGTGGATCCTGAAGCTTTGGCATCAGAGCTACAAAAGAAGTTCGCTTGTAGTACAACGGTGGCAGAACTACCAGGTAAGAAGGGGCTGGAGGTTCTGGTTCAAGGAGATGAGTGGTTGAGAAAGGTAATAATTAACAAGGTCATGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

178

Amino Acids

19.44

Weight (kDa)

9.42

Isoelectric Point (pI)

29.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB_eIF2D PF26291 15 - 57 1.5e-08 eIF2D, SWIB domain
SUI1 PF01253 103 - 164 1.6e-19 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 334
AclWI GGATC 2 cut(s) 383, 396
AcsI RAATTY 1 cut(s) 207
AcuI CTGAAG 3 cut(s) 18, 24, 414
AdeI CACNNNGTG 1 cut(s) 265
AfaI GTAC 2 cut(s) 197, 436
AgsI TTSAA 5 cut(s) 95, 169, 192, 307, 485
AjnI CCWGG 2 cut(s) 105, 454
AluBI AGCT 6 cut(s) 32, 38, 49, 115, 398, 412
AluI AGCT 6 cut(s) 32, 38, 49, 115, 398, 412
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 2 cut(s) 383, 396
AoxI GGCC 2 cut(s) 26, 174
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 174
BamHI GGATCC 1 cut(s) 388
BarI GAAGNNNNNNTAC 2 cut(s) 16, 48
BbvI GCAGC 1 cut(s) 242
BccI CCATC 1 cut(s) 264
BciT130I CCWGG 2 cut(s) 107, 456
BcoDI GTCTC 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 2 cut(s) 231, 335
BlsI GCNGC 2 cut(s) 232, 336
Bme1390I CCNGG 2 cut(s) 107, 456
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 2 cut(s) 175, 390
BmrFI CCNGG 2 cut(s) 107, 456
BmsI GCATC 5 cut(s) 55, 133, 148, 237, 413
BpmI CTGGAG 1 cut(s) 491
Bse1I ACTGG 1 cut(s) 375
BseBI CCWGG 2 cut(s) 107, 456
BseGI GGATG 3 cut(s) 70, 148, 252
BseNI ACTGG 1 cut(s) 375
BseXI GCAGC 1 cut(s) 242
BshFI GGCC 2 cut(s) 28, 176
BsmAI GTCTC 1 cut(s) 213
BsnI GGCC 2 cut(s) 28, 176
Bsp143I GATC 1 cut(s) 388
BspACI CCGC 1 cut(s) 334
BspANI GGCC 2 cut(s) 28, 176
BspLI GGNNCC 2 cut(s) 175, 390
BspPI GGATC 2 cut(s) 383, 396
BsrI ACTGG 1 cut(s) 375
BssMI GATC 1 cut(s) 388
Bst2UI CCWGG 2 cut(s) 107, 456
Bst4CI ACNGT 4 cut(s) 56, 165, 313, 442
BstC8I GCNNGC 3 cut(s) 30, 47, 252
BstDEI CTNAG 1 cut(s) 223
BstF5I GGATG 3 cut(s) 70, 148, 252
BstKTI GATC 1 cut(s) 391
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 1 cut(s) 388
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 2 cut(s) 107, 456
BstSCI CCNGG 2 cut(s) 105, 454
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 2 cut(s) 28, 176
BtsCI GGATG 3 cut(s) 70, 148, 252
BtsIMutI CAGTG 3 cut(s) 61, 69, 161
Cac8I GCNNGC 3 cut(s) 30, 47, 252
Cfr13I GGNCC 1 cut(s) 174
CsiI ACCWGGT 2 cut(s) 105, 454
Csp6I GTAC 2 cut(s) 196, 435
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 1 cut(s) 526
CviQI GTAC 2 cut(s) 196, 435
DdeI CTNAG 1 cut(s) 223
DpnI GATC 1 cut(s) 390
DpnII GATC 1 cut(s) 388
DraI TTTAAA 1 cut(s) 85
DraIII CACNNNGTG 1 cut(s) 265
Eco57I CTGAAG 3 cut(s) 18, 24, 414
EcoRII CCWGG 2 cut(s) 105, 454
FaeI CATG 1 cut(s) 529
FaiI YATR 4 cut(s) 90, 179, 213, 527
FatI CATG 1 cut(s) 525
Fnu4HI GCNGC 2 cut(s) 231, 335
FokI GGATG 3 cut(s) 77, 155, 259
Fsp4HI GCNGC 2 cut(s) 231, 335
GluI GCNGC 2 cut(s) 231, 335
GsuI CTGGAG 1 cut(s) 491
HaeIII GGCC 2 cut(s) 28, 176
Hin1II CATG 1 cut(s) 529
HindIII AAGCTT 1 cut(s) 396
HinfI GANTC 2 cut(s) 241, 281
Hpy188I TCNGA 3 cut(s) 64, 246, 409
Hpy188III TCNNGA 3 cut(s) 316, 366, 392
HpyAV CCTTC 1 cut(s) 457
HpyCH4III ACNGT 4 cut(s) 56, 165, 313, 442
HpyCH4IV ACGT 2 cut(s) 194, 261
HpyCH4V TGCA 2 cut(s) 161, 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 223
HpySE526I ACGT 2 cut(s) 194, 261
Hsp92II CATG 1 cut(s) 529
Kzo9I GATC 1 cut(s) 388
LmnI GCTCC 1 cut(s) 227
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 5 cut(s) 55, 133, 148, 237, 413
MabI ACCWGGT 2 cut(s) 105, 454
MaeII ACGT 2 cut(s) 194, 261
MaeIII GTNAC 1 cut(s) 265
MalI GATC 1 cut(s) 390
MboI GATC 1 cut(s) 388
MflI RGATCY 1 cut(s) 388
MluCI AATT 2 cut(s) 207, 513
MlyI GAGTC 1 cut(s) 275
MnlI CCTC 1 cut(s) 466
MseI TTAA 3 cut(s) 84, 111, 516
MspR9I CCNGG 2 cut(s) 107, 456
MvaI CCWGG 2 cut(s) 107, 456
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 1 cut(s) 388
NlaIII CATG 1 cut(s) 529
NlaIV GGNNCC 2 cut(s) 175, 390
NmuCI GTSAC 1 cut(s) 265
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 2 cut(s) 232, 336
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
Psp6I CCWGG 2 cut(s) 105, 454
PspGI CCWGG 2 cut(s) 105, 454
PspN4I GGNNCC 2 cut(s) 175, 390
PspPI GGNCC 1 cut(s) 174
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 2 cut(s) 197, 436
RsaNI GTAC 2 cut(s) 196, 435
SaqAI TTAA 3 cut(s) 84, 111, 516
SatI GCNGC 2 cut(s) 231, 335
Sau3AI GATC 1 cut(s) 388
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 2 cut(s) 107, 456
SexAI ACCWGGT 2 cut(s) 105, 454
SfaNI GCATC 5 cut(s) 55, 133, 148, 237, 413
SfcI CTRYAG 1 cut(s) 201
Sse9I AATT 2 cut(s) 207, 513
SsiI CCGC 1 cut(s) 334
StyD4I CCNGG 2 cut(s) 105, 454
TaaI ACNGT 4 cut(s) 56, 165, 313, 442
TaiI ACGT 2 cut(s) 197, 264
TasI AATT 2 cut(s) 207, 513
TatI WGTACW 1 cut(s) 434
TauI GCSGC 1 cut(s) 337
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 3 cut(s) 84, 111, 516
Tru9I TTAA 3 cut(s) 84, 111, 516
TscAI CASTG 3 cut(s) 61, 76, 168
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 200
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 3 cut(s) 61, 76, 168
XapI RAATTY 1 cut(s) 207
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.