Rmu_sc0001209.1_g000048

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001209.1
OG0000686
Physical Location & Seq
Forward (+)
215928 .. 217162
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001209.1_g000048.1.cds

Sequence Viewer

Length: 864 bp
atgctgaaagggggcgaggtttctcgatatgttattggaggggcacatttgatgtttcccggtatcagcatacctgctgaaggtttaccgtcgtttatagctggggaagcatgggcggttaaagttccaggaaatccagctcccattgctgtgggaactactacaatgagttgcactgaagcattaaaagctggattgcgtggaaaagccttaaaaattgctcactattatggtgacttactttgggaatcagttgagggtccttatgtgccaaatgcaggtttcttagaagatgctgtttttgaggatcctaccttgtcatcagctcaaatttctgatccatataatggtgcaaatgatggatcacatgaacaactgaatcgcattggtgataaggaattggggcaacatgttgaagttgctgatgtgcagtctgaacaaagttctgcttcggttgcaccgattgatgttaggaatgagattgctgaggaagtaactgcaaatgtaggtgatctgaagctaacagatgatgattctgctaatcagtcgactggggaggatcaacatcctctttctgccgaggatgtggacatgcttttggaaaaatgcctgatgaatgagattgctgaggaagcaactgcaaatgtaggtgatctgaagctaacagatgatgattctgctaatcagtcgactggggaggatcaacatcctctttctgccgaggatgtggacatgcttttggaaaaatgccttttgcaagcattgcatacaactgtcaaagacaaagaccttcccatgcccggaagcactctatggtatggtcaaactatgttttaccttgtaggccttcaggcatcacactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

287

Amino Acids

30.64

Weight (kDa)

4.25

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 82, 269
AccB7I CCANNNNNTGG 1 cut(s) 347
AccI GTMKAC 2 cut(s) 548, 689
AciI CCGC 1 cut(s) 116
AclWI GGATC 6 cut(s) 302, 315, 332, 370, 567, 708
AcsI RAATTY 1 cut(s) 330
AcuI CTGAAG 5 cut(s) 99, 198, 536, 677, 833
AfiI CCNNNNNNNGG 4 cut(s) 80, 278, 347, 800
AflIII ACRYGT 1 cut(s) 409
AgsI TTSAA 1 cut(s) 416
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 6 cut(s) 101, 140, 191, 326, 520, 661
AluI AGCT 6 cut(s) 101, 140, 191, 326, 520, 661
AlwI GGATC 6 cut(s) 302, 315, 332, 370, 567, 708
AoxI GGCC 1 cut(s) 844
ApoI RAATTY 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 2 cut(s) 60, 801
AsuHPI GGTGA 4 cut(s) 245, 401, 521, 662
AvaII GGWCC 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 46
BamHI GGATCC 1 cut(s) 307
BbvCI CCTCAGC 2 cut(s) 486, 627
BccI CCATC 1 cut(s) 353
BciT130I CCWGG 1 cut(s) 129
BcnI CCSGG 2 cut(s) 60, 801
BfaI CTAG 1 cut(s) 862
BfuAI ACCTGC 2 cut(s) 82, 269
Bme1390I CCNGG 3 cut(s) 60, 129, 801
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 2 cut(s) 261, 309
BmrFI CCNGG 3 cut(s) 60, 129, 801
BmrI ACTGGG 2 cut(s) 561, 702
BmsI GCATC 1 cut(s) 283
BmuI ACTGGG 2 cut(s) 561, 702
Bpu10I CCTNAGC 2 cut(s) 486, 627
BpuMI CCSGG 2 cut(s) 60, 801
BsaBI GATNNNNATC 2 cut(s) 564, 705
BsaJI CCNNGG 2 cut(s) 579, 720
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 278, 347, 800
Bse1I ACTGG 2 cut(s) 556, 697
Bse3DI GCAATG 2 cut(s) 144, 761
Bse8I GATNNNNATC 2 cut(s) 564, 705
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 579, 720
BseGI GGATG 4 cut(s) 565, 589, 706, 730
BseJI GATNNNNATC 2 cut(s) 564, 705
BseLI CCNNNNNNNGG 4 cut(s) 80, 278, 347, 800
BseMI GCAATG 2 cut(s) 144, 761
BseMII CTCAG 2 cut(s) 477, 618
BseNI ACTGG 2 cut(s) 556, 697
BseSI GKGCMC 1 cut(s) 46
BseYI CCCAGC 1 cut(s) 101
BsgI GTGCAG 1 cut(s) 449
BshFI GGCC 1 cut(s) 846
BsiSI CCGG 2 cut(s) 60, 801
BslI CCNNNNNNNGG 4 cut(s) 80, 278, 347, 800
BsnI GGCC 1 cut(s) 846
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 7 cut(s) 307, 337, 362, 511, 559, 652, 700
BspACI CCGC 1 cut(s) 116
BspANI GGCC 1 cut(s) 846
BspCNI CTCAG 2 cut(s) 478, 619
BspLI GGNNCC 2 cut(s) 261, 309
BspMI ACCTGC 2 cut(s) 82, 269
BspPI GGATC 6 cut(s) 302, 315, 332, 370, 567, 708
BsrDI GCAATG 2 cut(s) 144, 761
BsrI ACTGG 2 cut(s) 556, 697
BssECI CCNNGG 2 cut(s) 579, 720
BssMI GATC 7 cut(s) 307, 337, 362, 511, 559, 652, 700
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 90, 775
BstAPI GCANNNNNTGC 1 cut(s) 763
BstC8I GCNNGC 1 cut(s) 759
BstDEI CTNAG 3 cut(s) 286, 486, 627
BstENI CCTNNNNNAGG 1 cut(s) 78
BstF5I GGATG 4 cut(s) 565, 589, 706, 730
BstKTI GATC 7 cut(s) 310, 340, 365, 514, 562, 655, 703
BstMBI GATC 7 cut(s) 307, 337, 362, 511, 559, 652, 700
BstMWI GCNNNNNNNGC 6 cut(s) 107, 146, 188, 455, 632, 763
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 3 cut(s) 413, 595, 736
BstSCI CCNGG 3 cut(s) 58, 127, 799
BstSLI GKGCMC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 151
BstYI RGATCY 1 cut(s) 307
BsuRI GGCC 1 cut(s) 846
BtsCI GGATG 4 cut(s) 565, 589, 706, 730
BtsIMutI CAGTG 1 cut(s) 174
BveI ACCTGC 2 cut(s) 82, 269
Cac8I GCNNGC 1 cut(s) 759
Cfr13I GGNCC 1 cut(s) 260
CviAII CATG 6 cut(s) 111, 368, 410, 592, 733, 796
CviJI RGCY 8 cut(s) 101, 140, 191, 209, 326, 520, 661, 846
CviKI_1 RGCY 8 cut(s) 101, 140, 191, 209, 326, 520, 661, 846
DdeI CTNAG 3 cut(s) 286, 486, 627
DpnI GATC 7 cut(s) 309, 339, 364, 513, 561, 654, 702
DpnII GATC 7 cut(s) 307, 337, 362, 511, 559, 652, 700
Eco147I AGGCCT 1 cut(s) 846
Eco47I GGWCC 1 cut(s) 260
Eco57I CTGAAG 5 cut(s) 99, 198, 536, 677, 833
EcoNI CCTNNNNNAGG 1 cut(s) 78
EcoO109I RGGNCCY 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 127
FaeI CATG 6 cut(s) 114, 371, 413, 595, 736, 799
FalI AAGNNNNNCTT 2 cut(s) 433, 465
FatI CATG 6 cut(s) 110, 367, 409, 591, 732, 795
FblI GTMKAC 2 cut(s) 548, 689
FokI GGATG 4 cut(s) 552, 596, 693, 737
FspBI CTAG 1 cut(s) 862
GsaI CCCAGC 1 cut(s) 105
HaeIII GGCC 1 cut(s) 846
HapII CCGG 2 cut(s) 60, 801
Hin1II CATG 6 cut(s) 114, 371, 413, 595, 736, 799
HincII GTYRAC 2 cut(s) 549, 690
HindII GTYRAC 2 cut(s) 549, 690
HinfI GANTC 4 cut(s) 248, 379, 533, 674
HpaII CCGG 2 cut(s) 60, 801
HphI GGTGA 4 cut(s) 245, 401, 521, 662
Hpy166II GTNNAC 5 cut(s) 86, 549, 589, 690, 730
Hpy188I TCNGA 4 cut(s) 337, 436, 516, 657
Hpy188III TCNNGA 1 cut(s) 24
Hpy8I GTNNAC 5 cut(s) 86, 549, 589, 690, 730
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 3 cut(s) 74, 800, 857
HpyCH4III ACNGT 2 cut(s) 90, 775
HpyCH4V TGCA 9 cut(s) 174, 278, 353, 430, 458, 500, 641, 757, 766
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 146, 188, 455, 632, 763
HpyF3I CTNAG 3 cut(s) 286, 486, 627
Hsp92II CATG 6 cut(s) 114, 371, 413, 595, 736, 799
Kzo9I GATC 7 cut(s) 307, 337, 362, 511, 559, 652, 700
LmnI GCTCC 1 cut(s) 145
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 862
MaeIII GTNAC 2 cut(s) 233, 493
MalI GATC 7 cut(s) 309, 339, 364, 513, 561, 654, 702
MboI GATC 7 cut(s) 307, 337, 362, 511, 559, 652, 700
MboII GAAGA 1 cut(s) 302
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 3 cut(s) 216, 330, 398
MseI TTAA 3 cut(s) 120, 185, 212
MslI CAYNNNNRTG 2 cut(s) 149, 228
MspI CCGG 2 cut(s) 60, 801
MspR9I CCNGG 3 cut(s) 60, 129, 801
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 6 cut(s) 107, 146, 188, 455, 632, 763
NciI CCSGG 2 cut(s) 60, 801
NdeII GATC 7 cut(s) 307, 337, 362, 511, 559, 652, 700
NlaIII CATG 6 cut(s) 114, 371, 413, 595, 736, 799
NlaIV GGNNCC 2 cut(s) 261, 309
NmeAIII GCCGAG 2 cut(s) 604, 745
NmuCI GTSAC 1 cut(s) 233
NspI RCATGY 3 cut(s) 413, 595, 736
PceI AGGCCT 1 cut(s) 846
PciI ACATGT 1 cut(s) 409
PcsI WCGNNNNNNNCGW 1 cut(s) 458
PfeI GAWTC 4 cut(s) 248, 379, 533, 674
PflMI CCANNNNNTGG 1 cut(s) 347
PfoI TCCNGGA 1 cut(s) 127
PpuMI RGGWCCY 1 cut(s) 260
PscI ACATGT 1 cut(s) 409
Psp5II RGGWCCY 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 101
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 261, 309
PspPI GGNCC 1 cut(s) 260
PspPPI RGGWCCY 1 cut(s) 260
PsuI RGATCY 1 cut(s) 307
RseI CAYNNNNRTG 2 cut(s) 149, 228
SalI GTCGAC 2 cut(s) 547, 688
SaqAI TTAA 3 cut(s) 120, 185, 212
Sau3AI GATC 7 cut(s) 307, 337, 362, 511, 559, 652, 700
Sau96I GGNCC 1 cut(s) 260
ScrFI CCNGG 3 cut(s) 60, 129, 801
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 1 cut(s) 283
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 2 cut(s) 149, 228
Sse9I AATT 3 cut(s) 216, 330, 398
SseBI AGGCCT 1 cut(s) 846
SsiI CCGC 1 cut(s) 116
SspMI CTAG 1 cut(s) 862
StuI AGGCCT 1 cut(s) 846
StyD4I CCNGG 3 cut(s) 58, 127, 799
TaaI ACNGT 2 cut(s) 90, 775
TaqI TCGA 3 cut(s) 25, 548, 689
TasI AATT 3 cut(s) 216, 330, 398
TfiI GAWTC 4 cut(s) 248, 379, 533, 674
Tru1I TTAA 3 cut(s) 120, 185, 212
Tru9I TTAA 3 cut(s) 120, 185, 212
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 384, 629
TspRI CASTG 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 260
XagI CCTNNNNNAGG 1 cut(s) 78
XapI RAATTY 1 cut(s) 330
XceI RCATGY 3 cut(s) 413, 595, 736
XmiI GTMKAC 2 cut(s) 548, 689
XspI CTAG 1 cut(s) 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.