Rroxscaffold_3G00218110

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000686
Physical Location & Seq
Reverse (-)
128161 .. 130530
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00218110.1

Sequence Viewer

Length: 318 bp
ATGGGGCAACGTGTTGATGTTGCTGATGTGCAGTCTGAACCAAGTTCTGCTCCGGTTGCACCGATTAATGTTAGGAATGAGATTGCTGAGGAAGTAACTGCAAATGTAGGTGATCTGAAGCTAACAGATGATGATTCCGCTGATCAGTCGACTGGGAGGATCAACAACCTCTTTCTGCTGAGGATGTTGACATGCTTTTGGAAAAATGCCTCCTGCAAGCATTGCATACAACTGTCAAAGACAAAGACCTTCCCATGCCCGGAAGCACTCTATGGTCAAACTATGTTTTACCTTGTGGTTCTTCAGGCATCACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

105

Amino Acids

11.6

Weight (kDa)

5.18

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 149
AciI CCGC 1 cut(s) 138
AclWI GGATC 1 cut(s) 167
AcuI CTGAAG 2 cut(s) 137, 287
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 10
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
AlwI GGATC 1 cut(s) 167
AseI ATTAAT 1 cut(s) 66
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 122
BbvCI CCTCAGC 2 cut(s) 87, 179
BclI TGATCA 1 cut(s) 142
BcnI CCSGG 1 cut(s) 260
BfaI CTAG 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 260
BmrI ACTGGG 1 cut(s) 162
BmuI ACTGGG 1 cut(s) 162
Bpu10I CCTNAGC 2 cut(s) 87, 179
BpuMI CCSGG 1 cut(s) 260
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 220
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 2 cut(s) 78, 170
BseNI ACTGG 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 50
BsiSI CCGG 2 cut(s) 53, 260
BslI CCNNNNNNNGG 1 cut(s) 259
Bsp143I GATC 3 cut(s) 112, 142, 159
BspACI CCGC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 79, 171
BspPI GGATC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 220
BsrI ACTGG 1 cut(s) 157
BssMI GATC 3 cut(s) 112, 142, 159
Bst4CI ACNGT 1 cut(s) 234
BstAPI GCANNNNNTGC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 218
BstDEI CTNAG 2 cut(s) 87, 179
BstF5I GGATG 1 cut(s) 189
BstKTI GATC 3 cut(s) 115, 145, 162
BstMBI GATC 3 cut(s) 112, 142, 159
BstMWI GCNNNNNNNGC 2 cut(s) 56, 222
BstNSI RCATGY 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 258
BtsCI GGATG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 218
CviAII CATG 2 cut(s) 192, 255
CviJI RGCY 1 cut(s) 121
CviKI_1 RGCY 1 cut(s) 121
DdeI CTNAG 2 cut(s) 87, 179
DpnI GATC 3 cut(s) 114, 144, 161
DpnII GATC 3 cut(s) 112, 142, 159
Eco57I CTGAAG 2 cut(s) 137, 287
FaeI CATG 2 cut(s) 195, 258
FaiI YATR 5 cut(s) 193, 227, 256, 273, 284
FatI CATG 2 cut(s) 191, 254
FbaI TGATCA 1 cut(s) 142
FblI GTMKAC 1 cut(s) 149
FokI GGATG 1 cut(s) 196
FspBI CTAG 1 cut(s) 316
HapII CCGG 2 cut(s) 53, 260
Hin1II CATG 2 cut(s) 195, 258
HincII GTYRAC 2 cut(s) 150, 189
HindII GTYRAC 2 cut(s) 150, 189
HinfI GANTC 1 cut(s) 134
HpaII CCGG 2 cut(s) 53, 260
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 150, 189
Hpy188I TCNGA 2 cut(s) 37, 117
Hpy8I GTNNAC 2 cut(s) 150, 189
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 5 cut(s) 31, 59, 101, 216, 225
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 222
HpyF3I CTNAG 2 cut(s) 87, 179
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 2 cut(s) 195, 258
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 3 cut(s) 112, 142, 159
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 5 cut(s) 66, 138, 226, 273, 290
MaeI CTAG 1 cut(s) 316
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 94
MalI GATC 3 cut(s) 114, 144, 161
MboI GATC 3 cut(s) 112, 142, 159
MboII GAAGA 1 cut(s) 293
MnlI CCTC 5 cut(s) 82, 150, 174, 179, 220
MseI TTAA 1 cut(s) 66
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 2 cut(s) 53, 260
MspR9I CCNGG 1 cut(s) 260
MwoI GCNNNNNNNGC 2 cut(s) 56, 222
NciI CCSGG 1 cut(s) 260
NdeII GATC 3 cut(s) 112, 142, 159
NlaIII CATG 2 cut(s) 195, 258
NspI RCATGY 1 cut(s) 195
PfeI GAWTC 1 cut(s) 134
PshBI ATTAAT 1 cut(s) 66
SalI GTCGAC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 66
Sau3AI GATC 3 cut(s) 112, 142, 159
ScrFI CCNGG 1 cut(s) 260
SetI ASST 6 cut(s) 13, 112, 123, 171, 251, 294
SsiI CCGC 1 cut(s) 138
SspMI CTAG 1 cut(s) 316
StyD4I CCNGG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 234
TaiI ACGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 149
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
VspI ATTAAT 1 cut(s) 66
XceI RCATGY 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 149
XspI CTAG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.