RchiOBHm_Chr6g0249981

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000686
Physical Location & Seq
Reverse (-)
5684646 .. 5687407
2762 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22409

Sequence Viewer

Length: 210 bp
ATGACAGAAAGGCGGCAAGGTAATAAGAAAATGACTAAGTTATCAGGACTGGAAACATTTTTAGTGGATCCTGAAGCTTTGGCATCAGAGCTGCAAAAGAAGTTTGCTTGCAGTACAACGGTGGCAGAACTACCAGGTAAGAAGGGGCAGGAGGTTCTGGTTCAAGGTGGAGTGATTGAGAATCTGGTAACACACTTGATTGAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

69

Amino Acids

7.57

Weight (kDa)

6.56

Isoelectric Point (pI)

63.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 2 - 69 2.1e-20 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 13
AclWI GGATC 2 cut(s) 62, 75
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 1 cut(s) 115
AgsI TTSAA 2 cut(s) 164, 203
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 2 cut(s) 77, 91
AluI AGCT 2 cut(s) 77, 91
AlwI GGATC 2 cut(s) 62, 75
ApeKI GCWGC 1 cut(s) 91
BamHI GGATCC 1 cut(s) 67
BbvI GCAGC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 135
BisI GCNGC 2 cut(s) 14, 92
BlsI GCNGC 2 cut(s) 15, 93
Bme1390I CCNGG 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 67
BspACI CCGC 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 2 cut(s) 62, 75
BsrI ACTGG 1 cut(s) 54
BssMI GATC 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 36
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 109
CsiI ACCWGGT 1 cut(s) 133
Csp6I GTAC 1 cut(s) 114
CviJI RGCY 2 cut(s) 77, 91
CviKI_1 RGCY 2 cut(s) 77, 91
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 1 cut(s) 36
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 14, 92
Fsp4HI GCNGC 2 cut(s) 14, 92
GluI GCNGC 2 cut(s) 14, 92
HindIII AAGCTT 1 cut(s) 75
HinfI GANTC 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 45, 71
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 2 cut(s) 94, 111
HpyF3I CTNAG 1 cut(s) 36
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 8 cut(s) 30, 35, 84, 120, 134, 143, 147, 170
Lsp1109I GCAGC 1 cut(s) 78
LweI GCATC 1 cut(s) 92
MabI ACCWGGT 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MflI RGATCY 1 cut(s) 67
MnlI CCTC 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
NdeII GATC 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 2 cut(s) 15, 93
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 69
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SatI GCNGC 2 cut(s) 14, 92
Sau3AI GATC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 135
SetI ASST 6 cut(s) 22, 79, 93, 139, 156, 169
SexAI ACCWGGT 1 cut(s) 133
SfaNI GCATC 1 cut(s) 92
SsiI CCGC 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 121
TatI WGTACW 1 cut(s) 113
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 1 cut(s) 181
TseI GCWGC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.