RchiOBHm_Chr6g0250171

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000686
Physical Location & Seq
Reverse (-)
5839819 .. 5840529
711 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22426

Sequence Viewer

Length: 333 bp
ATGCAAGCCCATCACATTGTGACAAGGGGAAATGACTCGGTTGTTCGTAAAGGTGGTTTGAAAACAGTCCAGATAATGACAGAAAGGTGGCAAGGTAATAAGAAAATGACCAAGTTATCAGGACTGGAAACATTTTTAGTGGATCCTGAAGCTTTGGCATCAGAGCTACAAAAGAAGTTCGCTTGTAGTACAACCGTGGCAGAACTACCAAGTAAGAAGGGGCTGGAGGTTCTGGTTCAAGGTGGAGTGATTGAGAATCTGGCAAAACACTTGATTGAACAATGTGGGATCCCAAAGAGATATGTTGAGGTTCTTGACAAAACCAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

110

Amino Acids

12.26

Weight (kDa)

9.55

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 21 - 98 1.3e-21 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 137, 150, 283, 296
AcuI CTGAAG 1 cut(s) 168
AdeI CACNNNGTG 1 cut(s) 19
AfaI GTAC 1 cut(s) 190
AgsI TTSAA 3 cut(s) 61, 239, 278
AjnI CCWGG 1 cut(s) 323
AluBI AGCT 2 cut(s) 152, 166
AluI AGCT 2 cut(s) 152, 166
AlwI GGATC 4 cut(s) 137, 150, 283, 296
BamHI GGATCC 2 cut(s) 142, 288
BccI CCATC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 325
BmiI GGNNCC 2 cut(s) 144, 290
BmrFI CCNGG 1 cut(s) 325
BmsI GCATC 1 cut(s) 167
BpmI CTGGAG 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 325
BseDI CCNNGG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 129
Bsp143I GATC 2 cut(s) 142, 288
BspLI GGNNCC 2 cut(s) 144, 290
BspPI GGATC 4 cut(s) 137, 150, 283, 296
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 2 cut(s) 142, 288
Bst2UI CCWGG 1 cut(s) 325
Bst4CI ACNGT 2 cut(s) 67, 196
BstC8I GCNNGC 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 195
BstKTI GATC 2 cut(s) 145, 291
BstMBI GATC 2 cut(s) 142, 288
BstNI CCWGG 1 cut(s) 325
BstSCI CCNGG 1 cut(s) 323
BstX2I RGATCY 2 cut(s) 142, 288
BstYI RGATCY 2 cut(s) 142, 288
BtgI CCRYGG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 189
CviJI RGCY 4 cut(s) 8, 152, 166, 223
CviKI_1 RGCY 4 cut(s) 8, 152, 166, 223
CviQI GTAC 1 cut(s) 189
DpnI GATC 2 cut(s) 144, 290
DpnII GATC 2 cut(s) 142, 288
DraIII CACNNNGTG 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 323
FaiI YATR 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 245
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 2 cut(s) 35, 256
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 4 cut(s) 70, 120, 146, 314
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 2 cut(s) 67, 196
HpyCH4V TGCA 1 cut(s) 4
Kzo9I GATC 2 cut(s) 142, 288
LpnPI CCDG 8 cut(s) 83, 105, 110, 159, 209, 218, 245, 310
LweI GCATC 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 19
MalI GATC 2 cut(s) 144, 290
MboI GATC 2 cut(s) 142, 288
MflI RGATCY 2 cut(s) 142, 288
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 2 cut(s) 220, 301
MspR9I CCNGG 1 cut(s) 325
MvaI CCWGG 1 cut(s) 325
NdeII GATC 2 cut(s) 142, 288
NlaIV GGNNCC 2 cut(s) 144, 290
NmuCI GTSAC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 256
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 323
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 2 cut(s) 144, 290
PsuI RGATCY 2 cut(s) 142, 288
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
Sau3AI GATC 2 cut(s) 142, 288
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 325
SetI ASST 8 cut(s) 55, 89, 97, 154, 168, 231, 244, 312
SfaNI GCATC 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 323
TaaI ACNGT 2 cut(s) 67, 196
TatI WGTACW 1 cut(s) 188
TfiI GAWTC 1 cut(s) 256
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.