Rh6BG005500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000686
Physical Location & Seq
Forward (+)
829843 .. 830127
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG005500.1

Sequence Viewer

Length: 285 bp
ATGTTCACCAGCGGCACACTCTTCAGTCTCGTCTTCCAATTCCGTCCGCTCCTCTCCGCCGAAAAACGGCTGAATCGCCAACATTCCGACCACTTTCAGATCCCGAAACTCGTGCCCGCTCGCTCTGATCGCCACGTGGTGCGCTATGTTCCCGCCGGCGCTGTCCCCTGCCATAAAACACTGCCCGAGATTCACGCCCTCGAACAAGCTGCTTTGACTGTCGTTGATGAACTTGAGGACGTCAAAACACTGCACGGATACCGATTCTCCGGCGCGAGGCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.71

Weight (kDa)

9.73

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 243
AccBSI CCGCTC 2 cut(s) 49, 119
AccII CGCG 1 cut(s) 275
AciI CCGC 6 cut(s) 12, 47, 57, 117, 153, 280
AclWI GGATC 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 7
AcvI CACGTG 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 240
AdeI CACNNNGTG 1 cut(s) 139
AfiI CCNNNNNNNGG 2 cut(s) 66, 276
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 1 cut(s) 94
Ama87I CYCGRG 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 209
AspLEI GCGC 3 cut(s) 144, 161, 275
AvaI CYCGRG 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 117
BauI CACGAG 1 cut(s) 110
BbrPI CACGTG 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 83
BcgI CGANNNNNNTGC 4 cut(s) 94, 128, 191, 225
BciVI GTATCC 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 162
BfuI GTATCC 1 cut(s) 251
BisI GCNGC 2 cut(s) 13, 210
BlsI GCNGC 2 cut(s) 14, 211
BmeT110I CYCGRG 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 136
BsaHI GRCGYC 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 276
Bse118I RCCGGY 1 cut(s) 155
BseLI CCNNNNNNNGG 2 cut(s) 66, 276
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 117
BseXI GCAGC 1 cut(s) 196
BsgI GTGCAG 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 275
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 2 cut(s) 156, 270
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 66, 276
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 2 cut(s) 99, 127
BspACI CCGC 6 cut(s) 12, 47, 57, 117, 153, 280
BspFNI CGCG 1 cut(s) 275
BspPI GGATC 1 cut(s) 94
BsrBI CCGCTC 2 cut(s) 49, 119
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssMI GATC 2 cut(s) 99, 127
BssNI GRCGYC 1 cut(s) 240
BssSI CACGAG 1 cut(s) 110
Bst2BI CACGAG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 240
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 3 cut(s) 117, 121, 157
BstFNI CGCG 1 cut(s) 275
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 3 cut(s) 144, 161, 275
BstKTI GATC 2 cut(s) 102, 130
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 99, 127
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 117
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BsuI GTATCC 1 cut(s) 251
BtsI GCAGTG 2 cut(s) 179, 248
BtsIMutI CAGTG 2 cut(s) 179, 248
Cac8I GCNNGC 3 cut(s) 117, 121, 157
CfoI GCGC 3 cut(s) 144, 161, 275
Cfr10I RCCGGY 1 cut(s) 155
CviJI RGCY 2 cut(s) 70, 209
CviKI_1 RGCY 2 cut(s) 70, 209
DpnI GATC 2 cut(s) 101, 129
DpnII GATC 2 cut(s) 99, 127
DraIII CACNNNGTG 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
EciI GGCGGA 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 7
Eco72I CACGTG 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 185
FaiI YATR 2 cut(s) 147, 174
FaqI GGGAC 1 cut(s) 149
FauI CCCGC 2 cut(s) 124, 160
Fnu4HI GCNGC 2 cut(s) 13, 210
Fsp4HI GCNGC 2 cut(s) 13, 210
GlaI GCGC 3 cut(s) 143, 160, 274
GluI GCNGC 2 cut(s) 13, 210
HaeII RGCGCY 1 cut(s) 162
HapII CCGG 2 cut(s) 156, 270
HhaI GCGC 3 cut(s) 144, 161, 275
Hin1I GRCGYC 1 cut(s) 240
Hin6I GCGC 3 cut(s) 142, 159, 273
HinP1I GCGC 3 cut(s) 142, 159, 273
HinfI GANTC 3 cut(s) 73, 190, 264
HpaII CCGG 2 cut(s) 156, 270
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 88, 99, 127
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 2 cut(s) 135, 240
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpySE526I ACGT 2 cut(s) 135, 240
Hsp92I GRCGYC 1 cut(s) 240
HspAI GCGC 3 cut(s) 142, 159, 273
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
Kzo9I GATC 2 cut(s) 99, 127
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 3 cut(s) 22, 169, 181
Lsp1109I GCAGC 1 cut(s) 196
MaeII ACGT 2 cut(s) 135, 240
MalI GATC 2 cut(s) 101, 129
MbiI CCGCTC 2 cut(s) 49, 119
MboI GATC 2 cut(s) 99, 127
MboII GAAGA 2 cut(s) 13, 25
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 4 cut(s) 62, 209, 229, 270
MreI CGCCGGCG 1 cut(s) 155
MroNI GCCGGC 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 2 cut(s) 156, 270
MvnI CGCG 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 129
NaeI GCCGGC 1 cut(s) 157
NdeII GATC 2 cut(s) 99, 127
NgoMIV GCCGGC 1 cut(s) 155
PdiI GCCGGC 1 cut(s) 157
PfeI GAWTC 3 cut(s) 73, 190, 264
PkrI GCNGC 2 cut(s) 14, 211
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
Ppu21I YACGTR 1 cut(s) 136
PspCI CACGTG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 99
SatI GCNGC 2 cut(s) 13, 210
Sau3AI GATC 2 cut(s) 99, 127
SduI GDGCHC 1 cut(s) 117
SetI ASST 3 cut(s) 138, 211, 243
SgrAI CRCCGGYG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 1 cut(s) 38
SsiI CCGC 6 cut(s) 12, 47, 57, 117, 153, 280
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 2 cut(s) 138, 243
TaqI TCGA 1 cut(s) 201
TasI AATT 1 cut(s) 38
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 3 cut(s) 73, 190, 264
TscAI CASTG 2 cut(s) 186, 255
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 2 cut(s) 32, 270
TspRI CASTG 2 cut(s) 186, 255
ZraI GACGTC 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.