Rorug05G0494700

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000686
Physical Location & Seq
Forward (+)
67716899 .. 67717312
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0494700.1

Sequence Viewer

Length: 414 bp
ATGTCAACTCCTCCTTCCACTTCTACTTCAACTTCCACTCATGCCATTTTCGCTTTCATTGTTGCCGTACTCGTTTCCTTCATCCAAATCAGATTCCCAGGAACAGTAGTCTCCTCCCCTTTTGAAACACATCCTACGACTATCGTGGTTTTCATTGCTAGCTTATTTTCATACTGCTCGTCTCTTTTGGCCGCCAAAAGATCACCTGGTTATGCACCAACGTTTTGCATTGCCATGAGATCTTCTGGTTTACTTGCACTCGCTTCACTGCTCTCACTTCTGTTACCCGACTCTTATCACCGCGTACCATACTTGATGTTCATCTTCTATTTCATGGCGGAGTGTTTTCAATTGCGCCGAGTGTTGTGTGTATCAGAAGCACGTCGAGGTCGGGGACAGAGGCTGCCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

137

Amino Acids

15.12

Weight (kDa)

9.84

Isoelectric Point (pI)

60.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 303
AciI CCGC 3 cut(s) 192, 301, 338
AclI AACGTT 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 189
AfaI GTAC 2 cut(s) 69, 306
AgsI TTSAA 3 cut(s) 30, 125, 350
AjiI CACGTC 1 cut(s) 383
AjnI CCWGG 2 cut(s) 97, 205
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
Alw26I GTCTC 2 cut(s) 115, 186
AlwNI CAGNNNCTG 1 cut(s) 403
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 403
AspLEI GCGC 1 cut(s) 357
AsuHPI GGTGA 2 cut(s) 195, 290
AsuNHI GCTAGC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 390
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 2 cut(s) 99, 207
BcoDI GTCTC 2 cut(s) 115, 186
BfaI CTAG 1 cut(s) 159
BglII AGATCT 1 cut(s) 239
BisI GCNGC 2 cut(s) 192, 404
BlsI GCNGC 2 cut(s) 193, 405
Bme1390I CCNGG 2 cut(s) 99, 207
BmgBI CACGTC 1 cut(s) 383
BmrFI CCNGG 2 cut(s) 99, 207
BmtI GCTAGC 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 97
Bse3DI GCAATG 2 cut(s) 153, 228
Bse8I GATNNNNATC 1 cut(s) 320
BseBI CCWGG 2 cut(s) 99, 207
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 2 cut(s) 81, 130
BseJI GATNNNNATC 1 cut(s) 320
BseMI GCAATG 2 cut(s) 153, 228
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 390
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 1 cut(s) 191
BslFI GGGAC 1 cut(s) 408
BsmAI GTCTC 2 cut(s) 115, 186
BsmBI CGTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 408
BsnI GGCC 1 cut(s) 191
Bsp143I GATC 2 cut(s) 200, 239
BspACI CCGC 3 cut(s) 192, 301, 338
BspANI GGCC 1 cut(s) 191
BspFNI CGCG 1 cut(s) 303
BspOI GCTAGC 1 cut(s) 162
BsrDI GCAATG 2 cut(s) 153, 228
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 2 cut(s) 200, 239
Bst2UI CCWGG 2 cut(s) 99, 207
Bst4CI ACNGT 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 160
BstF5I GGATG 2 cut(s) 81, 130
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 2 cut(s) 203, 242
BstMAI GTCTC 2 cut(s) 115, 186
BstMBI GATC 2 cut(s) 200, 239
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 2 cut(s) 99, 207
BstSCI CCNGG 2 cut(s) 97, 205
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 390
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BsuRI GGCC 1 cut(s) 191
BtrI CACGTC 1 cut(s) 383
BtsCI GGATG 2 cut(s) 81, 130
BtsI GCAGTG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 266
Cac8I GCNNGC 1 cut(s) 160
CaiI CAGNNNCTG 1 cut(s) 403
CfoI GCGC 1 cut(s) 357
CsiI ACCWGGT 1 cut(s) 205
Csp6I GTAC 2 cut(s) 68, 305
CviAII CATG 3 cut(s) 41, 235, 334
CviJI RGCY 3 cut(s) 162, 191, 403
CviKI_1 RGCY 3 cut(s) 162, 191, 403
CviQI GTAC 2 cut(s) 68, 305
DpnI GATC 2 cut(s) 202, 241
DpnII GATC 2 cut(s) 200, 239
EaeI YGGCCR 1 cut(s) 189
EciI GGCGGA 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 97, 205
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 3 cut(s) 44, 238, 337
FaiI YATR 6 cut(s) 42, 172, 213, 236, 310, 335
FaqI GGGAC 1 cut(s) 408
FatI CATG 3 cut(s) 40, 234, 333
Fnu4HI GCNGC 2 cut(s) 192, 404
FokI GGATG 2 cut(s) 68, 117
Fsp4HI GCNGC 2 cut(s) 192, 404
FspBI CTAG 1 cut(s) 159
GlaI GCGC 1 cut(s) 356
GluI GCNGC 2 cut(s) 192, 404
HaeIII GGCC 1 cut(s) 191
HhaI GCGC 1 cut(s) 357
Hin1II CATG 3 cut(s) 44, 238, 337
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 93, 290
HphI GGTGA 2 cut(s) 195, 290
Hpy166II GTNNAC 2 cut(s) 6, 251
Hpy188I TCNGA 2 cut(s) 92, 376
Hpy8I GTNNAC 2 cut(s) 6, 251
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 2 cut(s) 24, 88
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 2 cut(s) 221, 382
HpyCH4V TGCA 3 cut(s) 215, 228, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpySE526I ACGT 2 cut(s) 221, 382
Hsp92II CATG 3 cut(s) 44, 238, 337
HspAI GCGC 1 cut(s) 355
Kzo9I GATC 2 cut(s) 200, 239
LpnPI CCDG 5 cut(s) 84, 111, 192, 219, 231
Lsp1109I GCAGC 1 cut(s) 390
MabI ACCWGGT 1 cut(s) 205
MaeI CTAG 1 cut(s) 159
MaeII ACGT 2 cut(s) 221, 382
MaeIII GTNAC 1 cut(s) 282
MalI GATC 2 cut(s) 202, 241
MboI GATC 2 cut(s) 200, 239
MboII GAAGA 2 cut(s) 234, 316
MfeI CAATTG 1 cut(s) 350
MflI RGATCY 1 cut(s) 239
MluCI AATT 1 cut(s) 350
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 4 cut(s) 21, 124, 380, 393
MslI CAYNNNNRTG 1 cut(s) 233
MspR9I CCNGG 2 cut(s) 99, 207
MunI CAATTG 1 cut(s) 350
MvaI CCWGG 2 cut(s) 99, 207
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 2 cut(s) 200, 239
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 3 cut(s) 44, 238, 337
NmeAIII GCCGAG 1 cut(s) 383
PfeI GAWTC 1 cut(s) 93
PkrI GCNGC 2 cut(s) 193, 405
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
Psp1406I AACGTT 1 cut(s) 221
Psp6I CCWGG 2 cut(s) 97, 205
PspGI CCWGG 2 cut(s) 97, 205
PstNI CAGNNNCTG 1 cut(s) 403
PsuI RGATCY 1 cut(s) 239
RsaI GTAC 2 cut(s) 69, 306
RsaNI GTAC 2 cut(s) 68, 305
RseI CAYNNNNRTG 1 cut(s) 233
SatI GCNGC 2 cut(s) 192, 404
Sau3AI GATC 2 cut(s) 200, 239
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 2 cut(s) 99, 207
SetI ASST 5 cut(s) 164, 208, 224, 385, 391
SexAI ACCWGGT 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 1 cut(s) 350
SsiI CCGC 3 cut(s) 192, 301, 338
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 2 cut(s) 97, 205
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 2 cut(s) 224, 385
TaqI TCGA 1 cut(s) 385
TasI AATT 1 cut(s) 350
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 1 cut(s) 93
TscAI CASTG 1 cut(s) 273
TseI GCWGC 1 cut(s) 403
TspDTI ATGAA 6 cut(s) 46, 70, 142, 159, 310, 322
TspRI CASTG 1 cut(s) 273
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.