Rmu_sc0001209.1_g000042

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001209.1
OG0000686
Physical Location & Seq
Forward (+)
199953 .. 200709
757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001209.1_g000042.1.cds

Sequence Viewer

Length: 387 bp
atgtaccctacagaaatccataaaagagacttaggagcagcatttgtgaaccggatgcaagcccatcacattgtgacaaggggaaatggctcggttgttcgtaaaggtggttttaaaacagtccagataatgacagaaaggcggcaaggtaataagaaaatgaccaagttatcaggactggaaacatttttggtggatcctgaagctttggcatcagagctgcaaaagaagttcgcttgcagtgcaacggtggaagaactaccaggtaagaaggggcaggaggttctggttcaaggtggagtgattgaaaatcaggcaaaacacttgattgaacaatatcggattccaaagagatacattaaggttctggacaaaaccaggagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

128

Amino Acids

14.5

Weight (kDa)

10.05

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 142
AclWI GGATC 2 cut(s) 191, 204
AcuI CTGAAG 1 cut(s) 222
AdeI CACNNNGTG 1 cut(s) 73
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 3 cut(s) 293, 308, 332
AjnI CCWGG 2 cut(s) 262, 377
AluBI AGCT 2 cut(s) 206, 220
AluI AGCT 2 cut(s) 206, 220
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 2 cut(s) 191, 204
ApeKI GCWGC 2 cut(s) 38, 220
BamHI GGATCC 1 cut(s) 196
BbvI GCAGC 2 cut(s) 50, 207
BccI CCATC 1 cut(s) 72
BciT130I CCWGG 2 cut(s) 264, 379
BcoDI GTCTC 1 cut(s) 21
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 3 cut(s) 39, 143, 221
BlsI GCNGC 3 cut(s) 40, 144, 222
Bme1390I CCNGG 2 cut(s) 264, 379
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 2 cut(s) 264, 379
BmsI GCATC 2 cut(s) 45, 221
BsaWI WCCGGW 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 183
BseBI CCWGG 2 cut(s) 264, 379
BseGI GGATG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 183
BseXI GCAGC 2 cut(s) 50, 207
BsiSI CCGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 2 cut(s) 191, 204
BsrI ACTGG 1 cut(s) 183
BssMI GATC 1 cut(s) 196
Bst2UI CCWGG 2 cut(s) 264, 379
Bst4CI ACNGT 2 cut(s) 121, 250
BstC8I GCNNGC 2 cut(s) 60, 238
BstDEI CTNAG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 60
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 2 cut(s) 264, 379
BstSCI CCNGG 2 cut(s) 262, 377
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 2 cut(s) 50, 207
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BtsCI GGATG 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 60, 238
CsiI ACCWGGT 1 cut(s) 262
Csp6I GTAC 1 cut(s) 4
CviJI RGCY 4 cut(s) 62, 90, 206, 220
CviKI_1 RGCY 4 cut(s) 62, 90, 206, 220
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 31
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
DraI TTTAAA 1 cut(s) 115
DraIII CACNNNGTG 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 222
EcoRII CCWGG 2 cut(s) 262, 377
FaiI YATR 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 39, 143, 221
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 3 cut(s) 39, 143, 221
GluI GCNGC 3 cut(s) 39, 143, 221
HapII CCGG 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 204
HinfI GANTC 1 cut(s) 343
HpaII CCGG 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 217, 342
Hpy188III TCNNGA 4 cut(s) 124, 174, 200, 368
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 2 cut(s) 121, 250
HpyCH4V TGCA 4 cut(s) 58, 223, 240, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 31
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 35
Lsp1109I GCAGC 2 cut(s) 50, 207
LweI GCATC 2 cut(s) 45, 221
MabI ACCWGGT 1 cut(s) 262
MaeIII GTNAC 1 cut(s) 73
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 1 cut(s) 266
MflI RGATCY 1 cut(s) 196
MnlI CCTC 1 cut(s) 274
MseI TTAA 2 cut(s) 114, 360
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 2 cut(s) 264, 379
MvaI CCWGG 2 cut(s) 264, 379
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 343
PkrI GCNGC 3 cut(s) 40, 144, 222
Psp6I CCWGG 2 cut(s) 262, 377
PspGI CCWGG 2 cut(s) 262, 377
PspN4I GGNNCC 1 cut(s) 198
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 114, 360
SatI GCNGC 3 cut(s) 39, 143, 221
Sau3AI GATC 1 cut(s) 196
ScrFI CCNGG 2 cut(s) 264, 379
SetI ASST 8 cut(s) 109, 151, 208, 222, 268, 285, 298, 366
SexAI ACCWGGT 1 cut(s) 262
SfaNI GCATC 2 cut(s) 45, 221
SfcI CTRYAG 1 cut(s) 9
SsiI CCGC 1 cut(s) 142
StyD4I CCNGG 2 cut(s) 262, 377
TaaI ACNGT 2 cut(s) 121, 250
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 2 cut(s) 114, 360
Tru9I TTAA 2 cut(s) 114, 360
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 2 cut(s) 38, 220
Tsp45I GTSAC 1 cut(s) 73
TspRI CASTG 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.