RchiOBHm_Chr6g0250211

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000686
Physical Location & Seq
Reverse (-)
5850317 .. 5854070
3754 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22430

Sequence Viewer

Length: 1152 bp
ATGGGGCAACATGTTGATGTTGCTGATGTGCAGTCTGAACCAAGTTCTGCTTCAGTTTCACCGATTGATGCTAGGAATGAGATTGGTGCAGAAGTAACTGCAAATGTAGGTGATCTGAAGCTAACAGATGATGATTCCGCCTATCAGTCAACTGGGGAGGATCAACAATTCAACACCCTCTTTCCACCGAGGATGTGGACATGCTTTTGGAAAAATGTCTTTCGCAAGCATTGCATACAACTGTCAAAGACAAAGACATTCCCATGCCCAGAAGCACTCTATGGTCAAACTATGTTTTACCTTTTAGGCCTTCAGGCATCACACTGGACATCATCATACAAGAAATTATCAAAGTGGTTACAAGCTAAATGTTCTACAGGATTGATTAGAGTGAAGGAAGATAAATATAAGGAGGAGTCTGTATTACTTTCTGTTAACCGCAGCCATCCAGATTACTCATCTTTCAAGCCCGAGAAACGACAAGTTGAAGAAGCTGTTCAAACTGGTGTTCCTGCTGTCAGTGAAAGTCGGTCGGTCAAAATCCTTGAAGTGGCTGAGATCTATAAACCAAGTGTACATGTAAATCCAGTATTTGCTTCTGTAGGTGCTGACACAGGCGAGCTTTACAGTGCTTCAGATGCCACTGACATTGTGTTTAAATATGTTGAAAAGGAAAACCTGGTTAAGCCGACAGATATATCCATTGTGATTTTGGATGCGATATTGTGTGATGCACTGTTCAAGGGGGCCATAAAGAAAGGTTCAACATACCCTACAGAAATCCATAACAGAGACTTGGGAGCAGCATTTGTGATCCGGATGCAAGCCCATCACATTGTGACAAGGGGAAATGACTCGGTTGTTAGTAAAGGTGGTTTGAAAACAGTCCAGATAATGACAGAAAGGTGGCAAGGTAATAAGAAAATGACCAAGTTATCAGGACTGGAAACATTTTTAGTGGATCCTGAAGCTTTGGCATCAGAGCTACAAAAGAAGTTCGCTTGTAGTACAACCGTGGCAGAACTACCAGATAAGAAGGGGCAGGAGGTTCTGGTTCAAGGTGGAGTGATTGAGAATCTTGCAAAACACTTGATTGAACAATATGGGATCCCAAAGAGATACATTGAGGTTCTTGACAAAACCAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

383

Amino Acids

42.65

Weight (kDa)

7.11

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_eIF2D PF25304 110 - 146 2.8e-06 eIF2D winged helix domain
SWIB_eIF2D PF26291 188 - 248 3.3e-11 eIF2D, SWIB domain
SUI1 PF01253 294 - 371 4.3e-21 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 816
AciI CCGC 2 cut(s) 138, 439
AclWI GGATC 6 cut(s) 168, 808, 956, 969, 1102, 1115
AcuI CTGAAG 5 cut(s) 36, 137, 296, 618, 987
AdeI CACNNNGTG 1 cut(s) 838
AfaI GTAC 2 cut(s) 576, 1009
AfiI CCNNNNNNNGG 1 cut(s) 550
AflIII ACRYGT 2 cut(s) 10, 577
AjnI CCWGG 2 cut(s) 678, 1142
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AluBI AGCT 6 cut(s) 121, 365, 494, 622, 971, 985
AluI AGCT 6 cut(s) 121, 365, 494, 622, 971, 985
Alw26I GTCTC 1 cut(s) 786
AlwI GGATC 6 cut(s) 168, 808, 956, 969, 1102, 1115
Ama87I CYCGRG 1 cut(s) 470
Aor13HI TCCGGA 1 cut(s) 816
AoxI GGCC 2 cut(s) 307, 747
ApeKI GCWGC 2 cut(s) 441, 803
Asp700I GAANNNNTTC 1 cut(s) 495
AspS9I GGNCC 1 cut(s) 747
AsuHPI GGTGA 2 cut(s) 51, 122
AvaI CYCGRG 1 cut(s) 470
BamHI GGATCC 2 cut(s) 961, 1107
BbvI GCAGC 2 cut(s) 453, 815
BccI CCATC 2 cut(s) 453, 837
BciT130I CCWGG 2 cut(s) 680, 1144
BcoDI GTCTC 1 cut(s) 786
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 3 cut(s) 375, 600, 774
BglII AGATCT 1 cut(s) 558
BisI GCNGC 2 cut(s) 442, 804
BlsI GCNGC 2 cut(s) 443, 805
Bme1390I CCNGG 2 cut(s) 680, 1144
BmeT110I CYCGRG 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 747
BmiI GGNNCC 3 cut(s) 748, 963, 1109
BmrFI CCNGG 2 cut(s) 680, 1144
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 7 cut(s) 58, 326, 628, 706, 721, 810, 986
BmuI ACTGGG 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 188, 1014
BsaWI WCCGGW 1 cut(s) 816
Bsc4I CCNNNNNNNGG 1 cut(s) 550
Bse1I ACTGG 5 cut(s) 157, 329, 508, 587, 948
Bse3DI GCAATG 1 cut(s) 229
BseAI TCCGGA 1 cut(s) 816
BseBI CCWGG 2 cut(s) 680, 1144
BseDI CCNNGG 2 cut(s) 188, 1014
BseGI GGATG 4 cut(s) 198, 445, 721, 825
BseLI CCNNNNNNNGG 1 cut(s) 550
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 546
BseNI ACTGG 5 cut(s) 157, 329, 508, 587, 948
BseRI GAGGAG 1 cut(s) 428
BseXI GCAGC 2 cut(s) 453, 815
BsgI GTGCAG 2 cut(s) 50, 108
Bsh1285I CGRYCG 1 cut(s) 533
BshFI GGCC 2 cut(s) 309, 749
BsiEI CGRYCG 1 cut(s) 533
BsiHKCI CYCGRG 1 cut(s) 470
BsiSI CCGG 1 cut(s) 817
BslI CCNNNNNNNGG 1 cut(s) 550
BsmAI GTCTC 1 cut(s) 786
BsnI GGCC 2 cut(s) 309, 749
BsoBI CYCGRG 1 cut(s) 470
Bsp13I TCCGGA 1 cut(s) 816
Bsp1407I TGTACA 1 cut(s) 574
Bsp143I GATC 6 cut(s) 112, 160, 558, 813, 961, 1107
BspACI CCGC 2 cut(s) 138, 439
BspANI GGCC 2 cut(s) 309, 749
BspCNI CTCAG 1 cut(s) 547
BspEI TCCGGA 1 cut(s) 816
BspLI GGNNCC 3 cut(s) 748, 963, 1109
BspPI GGATC 6 cut(s) 168, 808, 956, 969, 1102, 1115
BsrDI GCAATG 1 cut(s) 229
BsrGI TGTACA 1 cut(s) 574
BsrI ACTGG 5 cut(s) 157, 329, 508, 587, 948
BssECI CCNNGG 2 cut(s) 188, 1014
BssMI GATC 6 cut(s) 112, 160, 558, 813, 961, 1107
Bst2UI CCWGG 2 cut(s) 680, 1144
Bst4CI ACNGT 5 cut(s) 243, 629, 738, 886, 1015
BstAPI GCANNNNNTGC 1 cut(s) 231
BstAUI TGTACA 1 cut(s) 574
BstC8I GCNNGC 3 cut(s) 227, 620, 825
BstDEI CTNAG 1 cut(s) 555
BstDSI CCRYGG 1 cut(s) 1014
BstF5I GGATG 4 cut(s) 198, 445, 721, 825
BstKTI GATC 6 cut(s) 115, 163, 561, 816, 964, 1110
BstMAI GTCTC 1 cut(s) 786
BstMBI GATC 6 cut(s) 112, 160, 558, 813, 961, 1107
BstMCI CGRYCG 1 cut(s) 533
BstMWI GCNNNNNNNGC 2 cut(s) 231, 638
BstNI CCWGG 2 cut(s) 680, 1144
BstNSI RCATGY 3 cut(s) 14, 204, 581
BstSCI CCNGG 2 cut(s) 678, 1142
BstSFI CTRYAG 3 cut(s) 375, 600, 774
BstV1I GCAGC 2 cut(s) 453, 815
BstX2I RGATCY 3 cut(s) 558, 961, 1107
BstYI RGATCY 3 cut(s) 558, 961, 1107
BsuRI GGCC 2 cut(s) 309, 749
BtgI CCRYGG 1 cut(s) 1014
BtsCI GGATG 4 cut(s) 198, 445, 721, 825
BtsIMutI CAGTG 5 cut(s) 322, 526, 634, 642, 734
Cac8I GCNNGC 3 cut(s) 227, 620, 825
Cfr13I GGNCC 1 cut(s) 747
CsiI ACCWGGT 1 cut(s) 678
Csp6I GTAC 2 cut(s) 575, 1008
CspCI CAANNNNNGTGG 2 cut(s) 631, 666
CviAII CATG 4 cut(s) 11, 201, 264, 578
CviQI GTAC 2 cut(s) 575, 1008
DdeI CTNAG 1 cut(s) 555
DpnI GATC 6 cut(s) 114, 162, 560, 815, 963, 1109
DpnII GATC 6 cut(s) 112, 160, 558, 813, 961, 1107
DraI TTTAAA 1 cut(s) 658
DraIII CACNNNGTG 1 cut(s) 838
EciI GGCGGA 1 cut(s) 127
Eco147I AGGCCT 1 cut(s) 309
Eco57I CTGAAG 5 cut(s) 36, 137, 296, 618, 987
Eco88I CYCGRG 1 cut(s) 470
EcoRII CCWGG 2 cut(s) 678, 1142
FaeI CATG 4 cut(s) 14, 204, 267, 581
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FatI CATG 4 cut(s) 10, 200, 263, 577
Fnu4HI GCNGC 2 cut(s) 442, 804
FokI GGATG 4 cut(s) 205, 432, 728, 832
Fsp4HI GCNGC 2 cut(s) 442, 804
FspBI CTAG 1 cut(s) 72
GluI GCNGC 2 cut(s) 442, 804
HaeIII GGCC 2 cut(s) 309, 749
HapII CCGG 1 cut(s) 817
Hin1II CATG 4 cut(s) 14, 204, 267, 581
HincII GTYRAC 2 cut(s) 150, 436
HindII GTYRAC 2 cut(s) 150, 436
HindIII AAGCTT 1 cut(s) 969
HinfI GANTC 4 cut(s) 134, 416, 854, 1075
HpaI GTTAAC 1 cut(s) 436
HpaII CCGG 1 cut(s) 817
HphI GGTGA 2 cut(s) 51, 122
Hpy166II GTNNAC 4 cut(s) 150, 198, 436, 575
Hpy188I TCNGA 4 cut(s) 37, 117, 637, 982
Hpy188III TCNNGA 6 cut(s) 449, 817, 889, 939, 965, 1133
Hpy8I GTNNAC 4 cut(s) 150, 198, 436, 575
HpyAV CCTTC 3 cut(s) 320, 388, 1030
HpyCH4III ACNGT 5 cut(s) 243, 629, 738, 886, 1015
HpyCH4V TGCA 7 cut(s) 31, 89, 101, 234, 734, 823, 1082
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 638
HpyF3I CTNAG 1 cut(s) 555
Hsp92II CATG 4 cut(s) 14, 204, 267, 581
Kpn2I TCCGGA 1 cut(s) 816
KspAI GTTAAC 1 cut(s) 436
Kzo9I GATC 6 cut(s) 112, 160, 558, 813, 961, 1107
LmnI GCTCC 1 cut(s) 800
Lsp1109I GCAGC 2 cut(s) 453, 815
LweI GCATC 7 cut(s) 58, 326, 628, 706, 721, 810, 986
MabI ACCWGGT 1 cut(s) 678
MaeI CTAG 1 cut(s) 72
MaeIII GTNAC 3 cut(s) 94, 357, 838
MalI GATC 6 cut(s) 114, 162, 560, 815, 963, 1109
MboI GATC 6 cut(s) 112, 160, 558, 813, 961, 1107
MboII GAAGA 2 cut(s) 410, 500
MflI RGATCY 3 cut(s) 558, 961, 1107
MluCI AATT 2 cut(s) 167, 344
MlyI GAGTC 2 cut(s) 425, 848
MnlI CCTC 6 cut(s) 151, 183, 188, 406, 1039, 1120
MroI TCCGGA 1 cut(s) 816
MroXI GAANNNNTTC 1 cut(s) 495
MseI TTAA 3 cut(s) 435, 657, 684
MslI CAYNNNNRTG 2 cut(s) 15, 262
MspI CCGG 1 cut(s) 817
MspR9I CCNGG 2 cut(s) 680, 1144
MvaI CCWGG 2 cut(s) 680, 1144
MwoI GCNNNNNNNGC 2 cut(s) 231, 638
NdeII GATC 6 cut(s) 112, 160, 558, 813, 961, 1107
NlaIII CATG 4 cut(s) 14, 204, 267, 581
NlaIV GGNNCC 3 cut(s) 748, 963, 1109
NmuCI GTSAC 1 cut(s) 838
NspI RCATGY 3 cut(s) 14, 204, 581
PceI AGGCCT 1 cut(s) 309
PciI ACATGT 2 cut(s) 10, 577
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 2 cut(s) 134, 1075
PkrI GCNGC 2 cut(s) 443, 805
PleI GAGTC 2 cut(s) 424, 848
PpsI GAGTC 2 cut(s) 424, 848
PscI ACATGT 2 cut(s) 10, 577
Psp6I CCWGG 2 cut(s) 678, 1142
PspGI CCWGG 2 cut(s) 678, 1142
PspN4I GGNNCC 3 cut(s) 748, 963, 1109
PspPI GGNCC 1 cut(s) 747
PsuI RGATCY 3 cut(s) 558, 961, 1107
RsaI GTAC 2 cut(s) 576, 1009
RsaNI GTAC 2 cut(s) 575, 1008
RseI CAYNNNNRTG 2 cut(s) 15, 262
SaqAI TTAA 3 cut(s) 435, 657, 684
SatI GCNGC 2 cut(s) 442, 804
Sau3AI GATC 6 cut(s) 112, 160, 558, 813, 961, 1107
Sau96I GGNCC 1 cut(s) 747
SchI GAGTC 2 cut(s) 425, 848
ScrFI CCNGG 2 cut(s) 680, 1144
SexAI ACCWGGT 1 cut(s) 678
SfaNI GCATC 7 cut(s) 58, 326, 628, 706, 721, 810, 986
SfcI CTRYAG 3 cut(s) 375, 600, 774
SmiMI CAYNNNNRTG 2 cut(s) 15, 262
Sse9I AATT 2 cut(s) 167, 344
SseBI AGGCCT 1 cut(s) 309
SsiI CCGC 2 cut(s) 138, 439
SspMI CTAG 1 cut(s) 72
StuI AGGCCT 1 cut(s) 309
StyD4I CCNGG 2 cut(s) 678, 1142
TaaI ACNGT 5 cut(s) 243, 629, 738, 886, 1015
TaqII GACCGA 2 cut(s) 519, 523
TasI AATT 2 cut(s) 167, 344
TatI WGTACW 2 cut(s) 574, 1007
TfiI GAWTC 2 cut(s) 134, 1075
Tru1I TTAA 3 cut(s) 435, 657, 684
Tru9I TTAA 3 cut(s) 435, 657, 684
TscAI CASTG 5 cut(s) 329, 526, 634, 649, 741
TseFI GTSAC 1 cut(s) 838
TseI GCWGC 2 cut(s) 441, 803
Tsp45I GTSAC 1 cut(s) 838
TspRI CASTG 5 cut(s) 329, 526, 634, 649, 741
XceI RCATGY 3 cut(s) 14, 204, 581
XcmI CCANNNNNNNNNTGG 2 cut(s) 192, 709
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.