Rmu_sc0004691.1_g000007

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004691.1
OG0000686
Physical Location & Seq
Reverse (-)
14580 .. 16868
2289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004691.1_g000007.1.cds

Sequence Viewer

Length: 1218 bp
atgctccggtgcgaggcggtagttgacggagacgacgacggcggggagctcccaagcgaggcgttgacagaagtcgtcgtagggtttgagagagagagagagagagaagggagtggaagctcggtcgcaccagagactgtcaggaaagatttcccaaagcttccgacgccgatatcgatgctttactccctcccaaggtacctcttaccactttttccttctgaatcattattcttccttggttatgcccttactttttggcatttccccagcttccttgtatatggcatagagggaggctttcctatgttttctgatattgacggccgtggcaaagaaatttttcccacagtttatgccctctggaaggtccctgatatcttgccttctttcatgctgaaagggggcgaggtttctcgatatgttattggaggggcagatttgatgtttcctggtatcagcatacctgctgaaggtctaccaccgtttatagctggggaagcatgggcggttaaagttccaggaaatccagctcccattgctgtgggaactactggtatgatcttcactgaagcattaaacgctgggttgcgtggaaaagccttaaaaattgctcactattatggtgacttactttgggaatcagttgatggctcttatgtgccaaatgcaggtttcttagaagatgctgtttttgaggatcctacattgtcatcagctcaaatttctgattcatttgatggtgcaaatgatggatcacatgatcaactgaatggcattgatgatgagaaaatggggcaacatgttgatgttgctgatgtgcagtctgaaccaaattctgcttcggttgcaccgattgacgctaggaatgagattgctgaggaagtaactgcaaatgtaggtgatctgaagctaacagatggtgattccgctgatcagttgactgtggaggatcaacatcctctttccgccgaggatgtggacatggttttggaaaaatgccttttacaagcattgcatacaactgtgaaggacaaagaccttcccatgcccggaagcactctatggtcaaactatgttttacgttgtaggctctcaggcatcacactagacatcaagaaatcatcatacaagaaattatcaaagtggttacaagctaaatgttctacaggattggtacgttatgctttcatttccgctttttcagttttaacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

405

Amino Acids

43.96

Weight (kDa)

4.5

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 475, 662
Acc65I GGTACC 1 cut(s) 198
AccB1I GGYRCC 1 cut(s) 198
AccI GTMKAC 1 cut(s) 478
AciI CCGC 6 cut(s) 17, 42, 509, 930, 969, 1197
AclWI GGATC 4 cut(s) 695, 708, 763, 960
AcoI YGGCCR 1 cut(s) 325
AcsI RAATTY 3 cut(s) 339, 723, 835
AcuI CTGAAG 3 cut(s) 492, 591, 929
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 2 cut(s) 200, 1179
AfiI CCNNNNNNNGG 7 cut(s) 13, 58, 195, 367, 473, 671, 1052
AflIII ACRYGT 1 cut(s) 802
AjnI CCWGG 2 cut(s) 451, 520
AjuI GAANNNNNNNTTGG 2 cut(s) 826, 858
AluBI AGCT 9 cut(s) 49, 120, 160, 273, 494, 533, 719, 913, 1157
AluI AGCT 9 cut(s) 49, 120, 160, 273, 494, 533, 719, 913, 1157
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 2 cut(s) 24, 128
AlwI GGATC 4 cut(s) 695, 708, 763, 960
AlwNI CAGNNNCTG 1 cut(s) 137
AoxI GGCC 1 cut(s) 325
ApoI RAATTY 3 cut(s) 339, 723, 835
Asp700I GAANNNNTTC 2 cut(s) 149, 342
Asp718I GGTACC 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 370
AsuC2I CCSGG 1 cut(s) 1053
AsuHPI GGTGA 3 cut(s) 638, 914, 935
AvaII GGWCC 1 cut(s) 370
BamHI GGATCC 1 cut(s) 700
BanI GGYRCC 1 cut(s) 198
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 879
BccI CCATC 4 cut(s) 644, 734, 746, 914
BceAI ACGGC 3 cut(s) 55, 312, 340
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BciT130I CCWGG 2 cut(s) 453, 522
BclI TGATCA 2 cut(s) 763, 934
BcnI CCSGG 1 cut(s) 1053
BcoDI GTCTC 2 cut(s) 24, 128
BfaI CTAG 3 cut(s) 864, 1109, 1216
BfmI CTRYAG 1 cut(s) 1167
BfuAI ACCTGC 2 cut(s) 475, 662
Bme1390I CCNGG 3 cut(s) 453, 522, 1053
Bme18I GGWCC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 3 cut(s) 200, 372, 702
BmrFI CCNGG 3 cut(s) 453, 522, 1053
BmsI GCATC 3 cut(s) 168, 676, 1110
BoxI GACNNNNGTC 1 cut(s) 71
Bpu10I CCTNAGC 1 cut(s) 879
BpuMI CCSGG 1 cut(s) 1053
Bsa29I ATCGAT 1 cut(s) 176
BsaBI GATNNNNATC 1 cut(s) 957
BsaHI GRCGYC 1 cut(s) 167
BsaJI CCNNGG 4 cut(s) 194, 238, 328, 972
BsaWI WCCGGW 1 cut(s) 6
Bsc4I CCNNNNNNNGG 7 cut(s) 13, 58, 195, 367, 473, 671, 1052
Bse1I ACTGG 1 cut(s) 559
Bse3DI GCAATG 2 cut(s) 537, 1013
Bse8I GATNNNNATC 1 cut(s) 957
BseBI CCWGG 2 cut(s) 453, 522
BseCI ATCGAT 1 cut(s) 176
BseDI CCNNGG 4 cut(s) 194, 238, 328, 972
BseGI GGATG 2 cut(s) 958, 982
BseJI GATNNNNATC 1 cut(s) 957
BseLI CCNNNNNNNGG 7 cut(s) 13, 58, 195, 367, 473, 671, 1052
BseMI GCAATG 2 cut(s) 537, 1013
BseMII CTCAG 2 cut(s) 870, 1110
BseNI ACTGG 1 cut(s) 559
BseX3I CGGCCG 1 cut(s) 325
BseYI CCCAGC 3 cut(s) 269, 494, 584
BsgI GTGCAG 1 cut(s) 842
Bsh1285I CGRYCG 2 cut(s) 126, 328
BshFI GGCC 1 cut(s) 327
BshNI GGYRCC 1 cut(s) 198
BshVI ATCGAT 1 cut(s) 176
BsiEI CGRYCG 2 cut(s) 126, 328
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 2 cut(s) 7, 1053
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 7 cut(s) 13, 58, 195, 367, 473, 671, 1052
BsmAI GTCTC 2 cut(s) 24, 128
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 7 cut(s) 561, 700, 755, 763, 904, 934, 952
BspACI CCGC 6 cut(s) 17, 42, 509, 930, 969, 1197
BspANI GGCC 1 cut(s) 327
BspCNI CTCAG 2 cut(s) 871, 1109
BspDI ATCGAT 1 cut(s) 176
BspLI GGNNCC 3 cut(s) 200, 372, 702
BspMI ACCTGC 2 cut(s) 475, 662
BspPI GGATC 4 cut(s) 695, 708, 763, 960
BspT107I GGYRCC 1 cut(s) 198
BsrDI GCAATG 2 cut(s) 537, 1013
BsrI ACTGG 1 cut(s) 559
BssECI CCNNGG 4 cut(s) 194, 238, 328, 972
BssMI GATC 7 cut(s) 561, 700, 755, 763, 904, 934, 952
BssNI GRCGYC 1 cut(s) 167
BssT1I CCWWGG 2 cut(s) 194, 238
Bst2UI CCWGG 2 cut(s) 453, 522
Bst4CI ACNGT 5 cut(s) 139, 352, 486, 946, 1027
BstACI GRCGYC 1 cut(s) 167
BstDEI CTNAG 3 cut(s) 679, 879, 1096
BstDSI CCRYGG 1 cut(s) 328
BstENI CCTNNNNNAGG 2 cut(s) 365, 471
BstF5I GGATG 2 cut(s) 958, 982
BstKTI GATC 7 cut(s) 564, 703, 758, 766, 907, 937, 955
BstMAI GTCTC 2 cut(s) 24, 128
BstMBI GATC 7 cut(s) 561, 700, 755, 763, 904, 934, 952
BstMCI CGRYCG 2 cut(s) 126, 328
BstMWI GCNNNNNNNGC 5 cut(s) 166, 500, 539, 581, 848
BstNI CCWGG 2 cut(s) 453, 522
BstNSI RCATGY 1 cut(s) 806
BstPAI GACNNNNGTC 1 cut(s) 71
BstSCI CCNGG 3 cut(s) 451, 520, 1051
BstSFI CTRYAG 1 cut(s) 1167
BstX2I RGATCY 1 cut(s) 700
BstXI CCANNNNNNTGG 1 cut(s) 544
BstYI RGATCY 1 cut(s) 700
BstZI CGGCCG 1 cut(s) 325
Bsu15I ATCGAT 1 cut(s) 176
BsuRI GGCC 1 cut(s) 327
BsuTUI ATCGAT 1 cut(s) 176
BtgI CCRYGG 1 cut(s) 328
BtsCI GGATG 2 cut(s) 958, 982
BtsIMutI CAGTG 1 cut(s) 567
BveI ACCTGC 2 cut(s) 475, 662
CaiI CAGNNNCTG 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 370
ClaI ATCGAT 1 cut(s) 176
CseI GACGC 2 cut(s) 175, 869
Csp6I GTAC 2 cut(s) 199, 1178
CviAII CATG 6 cut(s) 394, 504, 761, 803, 985, 1048
CviQI GTAC 2 cut(s) 199, 1178
DdeI CTNAG 3 cut(s) 679, 879, 1096
DpnI GATC 7 cut(s) 563, 702, 757, 765, 906, 936, 954
DpnII GATC 7 cut(s) 561, 700, 755, 763, 904, 934, 952
EaeI YGGCCR 1 cut(s) 325
EagI CGGCCG 1 cut(s) 325
EciI GGCGGA 1 cut(s) 958
Ecl136II GAGCTC 1 cut(s) 49
EclXI CGGCCG 1 cut(s) 325
Eco130I CCWWGG 2 cut(s) 194, 238
Eco24I GRGCYC 1 cut(s) 51
Eco32I GATATC 2 cut(s) 174, 379
Eco47I GGWCC 1 cut(s) 370
Eco52I CGGCCG 1 cut(s) 325
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 3 cut(s) 492, 591, 929
EcoICRI GAGCTC 1 cut(s) 49
EcoNI CCTNNNNNAGG 2 cut(s) 365, 471
EcoO109I RGGNCCY 1 cut(s) 370
EcoRII CCWGG 2 cut(s) 451, 520
EcoRV GATATC 2 cut(s) 174, 379
EcoT14I CCWWGG 2 cut(s) 194, 238
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 2 cut(s) 194, 238
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 6 cut(s) 397, 507, 764, 806, 988, 1051
FaqI GGGAC 1 cut(s) 356
FatI CATG 6 cut(s) 393, 503, 760, 802, 984, 1047
FauI CCCGC 1 cut(s) 35
FbaI TGATCA 2 cut(s) 763, 934
FblI GTMKAC 1 cut(s) 478
FokI GGATG 2 cut(s) 945, 989
FriOI GRGCYC 1 cut(s) 51
FspBI CTAG 3 cut(s) 864, 1109, 1216
GsaI CCCAGC 3 cut(s) 273, 498, 588
HaeIII GGCC 1 cut(s) 327
HapII CCGG 2 cut(s) 7, 1053
HgaI GACGC 2 cut(s) 175, 869
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 6 cut(s) 397, 507, 764, 806, 988, 1051
HincII GTYRAC 3 cut(s) 25, 66, 942
HindII GTYRAC 3 cut(s) 25, 66, 942
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 4 cut(s) 224, 641, 731, 926
HpaII CCGG 2 cut(s) 7, 1053
HphI GGTGA 3 cut(s) 638, 914, 935
Hpy166II GTNNAC 5 cut(s) 25, 66, 479, 942, 982
Hpy188I TCNGA 6 cut(s) 165, 223, 316, 730, 829, 909
Hpy188III TCNNGA 4 cut(s) 142, 364, 417, 1117
Hpy8I GTNNAC 5 cut(s) 25, 66, 479, 942, 982
Hpy99I CGWCG 4 cut(s) 38, 41, 80, 169
HpyAV CCTTC 7 cut(s) 101, 228, 361, 396, 467, 1024, 1052
HpyCH4III ACNGT 5 cut(s) 139, 352, 486, 946, 1027
HpyCH4IV ACGT 2 cut(s) 1084, 1180
HpyCH4V TGCA 6 cut(s) 671, 746, 823, 851, 893, 1018
HpyF10VI GCNNNNNNNGC 5 cut(s) 166, 500, 539, 581, 848
HpyF3I CTNAG 3 cut(s) 679, 879, 1096
HpySE526I ACGT 2 cut(s) 1084, 1180
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 6 cut(s) 397, 507, 764, 806, 988, 1051
KpnI GGTACC 1 cut(s) 202
Ksp22I TGATCA 2 cut(s) 763, 934
Kzo9I GATC 7 cut(s) 561, 700, 755, 763, 904, 934, 952
LmnI GCTCC 4 cut(s) 9, 46, 54, 538
LweI GCATC 3 cut(s) 168, 676, 1110
MaeI CTAG 3 cut(s) 864, 1109, 1216
MaeII ACGT 2 cut(s) 1084, 1180
MaeIII GTNAC 3 cut(s) 626, 886, 1149
MalI GATC 7 cut(s) 563, 702, 757, 765, 906, 936, 954
MboI GATC 7 cut(s) 561, 700, 755, 763, 904, 934, 952
MboII GAAGA 3 cut(s) 226, 556, 695
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 5 cut(s) 339, 609, 723, 835, 1136
MmeI TCCRAC 1 cut(s) 188
MroXI GAANNNNTTC 2 cut(s) 149, 342
MseI TTAA 4 cut(s) 513, 578, 605, 1211
MslI CAYNNNNRTG 3 cut(s) 542, 621, 807
MspA1I CMGCKG 1 cut(s) 932
MspI CCGG 2 cut(s) 7, 1053
MspR9I CCNGG 3 cut(s) 453, 522, 1053
MvaI CCWGG 2 cut(s) 453, 522
MwoI GCNNNNNNNGC 5 cut(s) 166, 500, 539, 581, 848
NciI CCSGG 1 cut(s) 1053
NdeII GATC 7 cut(s) 561, 700, 755, 763, 904, 934, 952
NlaIII CATG 6 cut(s) 397, 507, 764, 806, 988, 1051
NlaIV GGNNCC 3 cut(s) 200, 372, 702
NmeAIII GCCGAG 1 cut(s) 997
NmuCI GTSAC 1 cut(s) 626
NspI RCATGY 1 cut(s) 806
PciI ACATGT 1 cut(s) 802
PcsI WCGNNNNNNNCGW 3 cut(s) 33, 173, 851
PdmI GAANNNNTTC 2 cut(s) 149, 342
PfeI GAWTC 4 cut(s) 224, 641, 731, 926
PfoI TCCNGGA 1 cut(s) 520
PpuMI RGGWCCY 1 cut(s) 370
PscI ACATGT 1 cut(s) 802
PshAI GACNNNNGTC 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 370
Psp6I CCWGG 2 cut(s) 451, 520
PspFI CCCAGC 3 cut(s) 269, 494, 584
PspGI CCWGG 2 cut(s) 451, 520
PspN4I GGNNCC 3 cut(s) 200, 372, 702
PspPI GGNCC 1 cut(s) 370
PspPPI RGGWCCY 1 cut(s) 370
PstNI CAGNNNCTG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 700
RsaI GTAC 2 cut(s) 200, 1179
RsaNI GTAC 2 cut(s) 199, 1178
RseI CAYNNNNRTG 3 cut(s) 542, 621, 807
SacI GAGCTC 1 cut(s) 51
SaqAI TTAA 4 cut(s) 513, 578, 605, 1211
Sau3AI GATC 7 cut(s) 561, 700, 755, 763, 904, 934, 952
Sau96I GGNCC 1 cut(s) 370
ScrFI CCNGG 3 cut(s) 453, 522, 1053
SduI GDGCHC 1 cut(s) 51
SfaNI GCATC 3 cut(s) 168, 676, 1110
SfcI CTRYAG 1 cut(s) 1167
SinI GGWCC 1 cut(s) 370
SmiMI CAYNNNNRTG 3 cut(s) 542, 621, 807
Sse9I AATT 5 cut(s) 339, 609, 723, 835, 1136
SsiI CCGC 6 cut(s) 17, 42, 509, 930, 969, 1197
SspMI CTAG 3 cut(s) 864, 1109, 1216
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 3 cut(s) 451, 520, 1051
StyI CCWWGG 2 cut(s) 194, 238
TaaI ACNGT 5 cut(s) 139, 352, 486, 946, 1027
TaiI ACGT 2 cut(s) 1087, 1183
TaqI TCGA 2 cut(s) 176, 418
TaqII GACCGA 1 cut(s) 112
TasI AATT 5 cut(s) 339, 609, 723, 835, 1136
TfiI GAWTC 4 cut(s) 224, 641, 731, 926
Tru1I TTAA 4 cut(s) 513, 578, 605, 1211
Tru9I TTAA 4 cut(s) 513, 578, 605, 1211
TscAI CASTG 1 cut(s) 574
TseFI GTSAC 1 cut(s) 626
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 3 cut(s) 382, 723, 1180
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 1 cut(s) 574
VpaK11BI GGWCC 1 cut(s) 370
XagI CCTNNNNNAGG 2 cut(s) 365, 471
XapI RAATTY 3 cut(s) 339, 723, 835
XceI RCATGY 1 cut(s) 806
XmiI GTMKAC 1 cut(s) 478
XmnI GAANNNNTTC 2 cut(s) 149, 342
XspI CTAG 3 cut(s) 864, 1109, 1216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.