RchiOBHm_Chr6g0249871

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000686
Physical Location & Seq
Reverse (-)
5660657 .. 5661916
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22399

Sequence Viewer

Length: 453 bp
ATGTTCCTGCAATCCCTCGTAGTTCCTCTTCTGCCAATCCTGCAATGGATCAAATCCCCCAACAACCACAATCGTCGCCGGAAAATCCACCCCCGAAATATCCACCGCCTTCGGCCCGAACAAATTCACCACCGGGTGGTCCCGATCCGACCCCTCCGGCAAAAAACGCGTTCCACATCCATTCCGTCCGCTCTATGTTCACCAGCGGCACACTCTTCGGTCTCGTCTCCGATTCCGTCCGCTCCTCTCCTCGCTCTCTCTGATCGCCACGTGGCGCGCTATGTTCCCAAGGTGGAGATCAAGGTTTCAAAGTATCAAAATCGAGTCCTTGTATATGGCATAGAGGGAGGCTTTCCTATGTTTTATGATATTGACGGGCGTGGCAAAGAAATTTTTCCCACAGTTTATGCCCTCTGGAAGGTCCCTGATCTCTTGCCTTCTTTCATGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

150

Amino Acids

17.21

Weight (kDa)

10.79

Isoelectric Point (pI)

77.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pre-PUA PF17832 96 - 142 6.3e-07 Pre-PUA-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 136
AccBSI CCGCTC 2 cut(s) 191, 242
AccII CGCG 2 cut(s) 169, 277
AciI CCGC 4 cut(s) 106, 189, 206, 240
AclWI GGATC 2 cut(s) 56, 139
AcsI RAATTY 2 cut(s) 123, 390
AcvI CACGTG 1 cut(s) 271
AdeI CACNNNGTG 1 cut(s) 136
AfiI CCNNNNNNNGG 2 cut(s) 136, 418
AflIII ACRYGT 1 cut(s) 167
AgsI TTSAA 1 cut(s) 309
Alw26I GTCTC 2 cut(s) 226, 231
AlwI GGATC 2 cut(s) 56, 139
AoxI GGCC 1 cut(s) 113
ApoI RAATTY 2 cut(s) 123, 390
Asp700I GAANNNNTTC 2 cut(s) 123, 393
AspLEI GCGC 2 cut(s) 277, 279
AspS9I GGNCC 3 cut(s) 114, 139, 421
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 119, 192
AvaII GGWCC 2 cut(s) 139, 421
BarI GAAGNNNNNNTAC 2 cut(s) 12, 44
BbrPI CACGTG 1 cut(s) 271
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 226, 231
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 2 cut(s) 139, 421
BmgT120I GGNCC 3 cut(s) 114, 139, 421
BmiI GGNNCC 2 cut(s) 141, 423
BmrFI CCNGG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 134
BsaAI YACGTR 1 cut(s) 271
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 418
Bse3DI GCAATG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 176
BseLI CCNNNNNNNGG 2 cut(s) 136, 418
BseMI GCAATG 1 cut(s) 50
BsePI GCGCGC 1 cut(s) 275
BseRI GAGGAG 2 cut(s) 234, 239
Bsh1236I CGCG 2 cut(s) 169, 277
BshFI GGCC 1 cut(s) 115
BsiSI CCGG 3 cut(s) 79, 133, 157
BslFI GGGAC 2 cut(s) 125, 407
BslI CCNNNNNNNGG 2 cut(s) 136, 418
BsmAI GTCTC 2 cut(s) 226, 231
BsmBI CGTCTC 1 cut(s) 231
BsmFI GGGAC 2 cut(s) 125, 407
BsnI GGCC 1 cut(s) 115
Bso31I GGTCTC 1 cut(s) 226
Bsp143I GATC 5 cut(s) 48, 144, 262, 297, 427
BspACI CCGC 4 cut(s) 106, 189, 206, 240
BspANI GGCC 1 cut(s) 115
BspFNI CGCG 2 cut(s) 169, 277
BspLI GGNNCC 2 cut(s) 141, 423
BspPI GGATC 2 cut(s) 56, 139
BspTNI GGTCTC 1 cut(s) 226
BsrBI CCGCTC 2 cut(s) 191, 242
BsrDI GCAATG 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 288
BssHII GCGCGC 1 cut(s) 275
BssMI GATC 5 cut(s) 48, 144, 262, 297, 427
BssT1I CCWWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 2 cut(s) 33, 220
BstBAI YACGTR 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 277
BstENI CCTNNNNNAGG 1 cut(s) 416
BstF5I GGATG 1 cut(s) 176
BstFNI CGCG 2 cut(s) 169, 277
BstHHI GCGC 2 cut(s) 277, 279
BstKTI GATC 5 cut(s) 51, 147, 265, 300, 430
BstMAI GTCTC 2 cut(s) 226, 231
BstMBI GATC 5 cut(s) 48, 144, 262, 297, 427
BstMWI GCNNNNNNNGC 2 cut(s) 40, 166
BstSCI CCNGG 1 cut(s) 132
BstUI CGCG 2 cut(s) 169, 277
BsuRI GGCC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 277
CfoI GCGC 2 cut(s) 277, 279
Cfr13I GGNCC 3 cut(s) 114, 139, 421
CviAII CATG 1 cut(s) 445
CviJI RGCY 2 cut(s) 115, 351
CviKI_1 RGCY 2 cut(s) 115, 351
DpnI GATC 5 cut(s) 50, 146, 264, 299, 429
DpnII GATC 5 cut(s) 48, 144, 262, 297, 427
DraIII CACNNNGTG 1 cut(s) 136
Eam1104I CTCTTC 2 cut(s) 33, 220
EarI CTCTTC 2 cut(s) 33, 220
Eco130I CCWWGG 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 226
Eco47I GGWCC 2 cut(s) 139, 421
Eco72I CACGTG 1 cut(s) 271
EcoNI CCTNNNNNAGG 1 cut(s) 416
EcoO109I RGGNCCY 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
Esp3I CGTCTC 1 cut(s) 231
FaeI CATG 1 cut(s) 448
FaiI YATR 9 cut(s) 196, 282, 334, 336, 341, 359, 366, 408, 446
FaqI GGGAC 2 cut(s) 125, 407
FatI CATG 1 cut(s) 444
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 207
GlaI GCGC 2 cut(s) 276, 278
GluI GCNGC 1 cut(s) 207
HaeIII GGCC 1 cut(s) 115
HapII CCGG 3 cut(s) 79, 133, 157
HhaI GCGC 2 cut(s) 277, 279
Hin1II CATG 1 cut(s) 448
Hin6I GCGC 2 cut(s) 275, 277
HinP1I GCGC 2 cut(s) 275, 277
HinfI GANTC 2 cut(s) 232, 324
HpaII CCGG 3 cut(s) 79, 133, 157
HphI GGTGA 2 cut(s) 119, 192
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 3 cut(s) 149, 231, 262
Hpy188III TCNNGA 2 cut(s) 142, 415
Hpy8I GTNNAC 1 cut(s) 200
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 3 cut(s) 119, 412, 447
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 2 cut(s) 10, 43
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 166
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 1 cut(s) 448
HspAI GCGC 2 cut(s) 275, 277
Kzo9I GATC 5 cut(s) 48, 144, 262, 297, 427
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 8 cut(s) 20, 53, 92, 146, 170, 216, 400, 438
MaeII ACGT 1 cut(s) 270
MalI GATC 5 cut(s) 50, 146, 264, 299, 429
MbiI CCGCTC 2 cut(s) 191, 242
MboI GATC 5 cut(s) 48, 144, 262, 297, 427
MboII GAAGA 2 cut(s) 20, 207
MluCI AATT 2 cut(s) 123, 390
MluI ACGCGT 1 cut(s) 167
MlyI GAGTC 1 cut(s) 333
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 8 cut(s) 26, 36, 164, 255, 260, 337, 341, 422
MroXI GAANNNNTTC 2 cut(s) 123, 393
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 3 cut(s) 79, 133, 157
MspR9I CCNGG 1 cut(s) 134
MvnI CGCG 2 cut(s) 169, 277
MwoI GCNNNNNNNGC 2 cut(s) 40, 166
NciI CCSGG 1 cut(s) 134
NdeII GATC 5 cut(s) 48, 144, 262, 297, 427
NlaIII CATG 1 cut(s) 448
NlaIV GGNNCC 2 cut(s) 141, 423
PauI GCGCGC 1 cut(s) 275
PdmI GAANNNNTTC 2 cut(s) 123, 393
PfeI GAWTC 1 cut(s) 232
PflMI CCANNNNNTGG 1 cut(s) 136
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 332
PmaCI CACGTG 1 cut(s) 271
PmlI CACGTG 1 cut(s) 271
PpsI GAGTC 1 cut(s) 332
Ppu21I YACGTR 1 cut(s) 271
PpuMI RGGWCCY 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 421
PspCI CACGTG 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 141, 423
PspPI GGNCC 3 cut(s) 114, 139, 421
PspPPI RGGWCCY 1 cut(s) 421
PteI GCGCGC 1 cut(s) 275
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 5 cut(s) 48, 144, 262, 297, 427
Sau96I GGNCC 3 cut(s) 114, 139, 421
SchI GAGTC 1 cut(s) 333
ScrFI CCNGG 1 cut(s) 134
SetI ASST 4 cut(s) 273, 294, 306, 423
SinI GGWCC 2 cut(s) 139, 421
Sse9I AATT 2 cut(s) 123, 390
SsiI CCGC 4 cut(s) 106, 189, 206, 240
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 403
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 322
TaqII GACCGA 1 cut(s) 208
TasI AATT 2 cut(s) 123, 390
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 433
TspGWI ACGGA 2 cut(s) 174, 225
Van91I CCANNNNNTGG 1 cut(s) 136
VpaK11BI GGWCC 2 cut(s) 139, 421
XagI CCTNNNNNAGG 1 cut(s) 416
XapI RAATTY 2 cut(s) 123, 390
XcmI CCANNNNNNNNNTGG 1 cut(s) 42
XmnI GAANNNNTTC 2 cut(s) 123, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.