Rorug05G0498100

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000686
Physical Location & Seq
Forward (+)
68005103 .. 68007457
2355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0498100.1

Sequence Viewer

Length: 2217 bp
ATGGCAACTGTAGGCACCCCAGTTATCTCTCTCCCACGTCATCCCACCACTCCCTCCCCAACCGTCAATAACGACCTTCGCTTCCCAACCCAACCGCTTCTCCCACTGATAGACCAATGCACCACCATCAACCAGCTCAAGCAAGTCCATGCCCAAATGCTCAAAACAGCCCTATTCTTCGACCCTTATTCCGCTAGTAAGCTCATCACAGCTGCTGCTCTCTCCTCCTTCTCGAGCCTCGACTATGCACGCCAAGTGTTCGACGAAATTCCTGACCCAAATCTGTTCACTTGGAACGCCCTCATTCGCGCGTACGCCTCCAGCCCCGACCCAGTTGAAAGCATTCTCGTATTTCTGCAGATGCTTGACGAGTGTGACGAGTGCCCCAATAAGTTCACTTTCCCTTTTCTGCTCAAGGCGGCGTCGGAGCTCCGGGCTTCCAAGGTTGGGAGAGGTTTTCATGCCATGGTGATAAAAGCCGAGCTGGGTTCGGATGTTTACATTGTTAATTCGCTCATTCACTTTTATGGGTCGTGCGGGGATTTGGATTTGGCGCGTTTGGTGTTTTTGAAGACTTATAAGAAGGATGTTGTTACTTGGAATTCTGTTATCACGGCTTTCGCTCAGGGGAACTGTCCCGAGGTGGCGTTGGAGTTGTTTAAGGAAATGGAGGCGGAGAATATGAAGCCGAATGATGTCACCATGGTTAGTGTCTTGTCAGCTTGCGCAAAGAAGGCGGATTTGGAGTTTGGAAGGTGGGTTTGTTTGAATGTTGAAAGGCATGGAGTTGAAGAGAACTTGACTTTGAATAATGCTATGCTGGATATGTATGTGAAATGCGGGAGTGTTGAAGATGCGGAGAGATTGTTTGGTAGGATGCCGGAGAAGGACGTTGTGTCGTGGACTACTATGCTTGATGGGTATGCTCGGATGGGGAAATATGATGAGGCTAGGCGTGTTTTTGCTGCCATGCCTAGTCAGGATATTGCTGCGTGGAATGTGCTCATTTCGTCTTATGAACAGAATGGTAGGCCGAAAGAGGCTTTAGCTGTCTTCCATGAGTTGCAGAAGAACAAGGGTCCCAAGCCTGATGAGGTTACTCTAGTTAGTACTCTGGCAGCGTGTGCTCAATTGGGAGCGATTGATCTTGGCGGCTGGATACATGTTTACGTAAAGAAGCAGGGAATGAAGTTGAATTGTCACCTCACAACCTCGCTTATCGACATGTATGCAAAATGCGGAAATCTAGAGAAGGCACTTGAGGTTTTTAATTCGGTGGAGATAAGAGACGTATTTGTCTGGAGCGCCATGATTGCTGCTTTGGCAATGCATGGTCAGGGGAGGGATGCATTGCACTTTTTCTCAAAAATGCTAGAAGCTGAGGTGAAGCCAAATGCTGTGACATTTACTAACATATTATGCGCATGTAGCCACGCAGGATTGGTGGATGAGGGAAGAATATTTTTCTATCAAATGGAGCGAGTTTATGGAGTTGTGCCTGGAATAAAGCACTATGCGTGCATGGTTGACATTCTTGGTCGTTCAGGTAATCTGGAGGAAGCTGCAGAACTGATAGAGAAAATGCCAATTTCTCCCACTCCTTCTGTATGGGGGGCTCTGCTTGGGGCATGTACGCGCCATGGGAATGTTGCACTTGCTGAAAAGGCTTGTAGCCATTTGCTCGACTTGGATCCCAGAAATCATGGAGCCTATGTACTCTTATCAAATATATATGCCAAAACAGGGAAATGGGAAGCAGTTTCTGGGTTAAGGAAGCTCATGCGAGATTCTGGAATAAAGAAAGAACCTGGCTGTAGCTCAATCGAAATCAACGGTAGTGTTCATGAGTTTCTAGTTGGTGATAATTCTCATCCTTTAGCCAAAGATATCTACTCAAAGTTGGATGAGATAGCTGGGAGATTGAAGTCAATCGGATATGTGCCAAACAAGTCACACCTACTGCAATTTGTTGAGGAAGAGGACATGAAGGAACAGGCCCTAATTCTCCATAGTGAGAAACTAGCGATTGCCTTTGGACTTATTAGCTCCAAGCCATCTCAACCAATTCGCGTTGTGAAGAATCTTCGTGTTTGTGGAGACTGCCACTCAGTTGCTAAGCTTATATCTAAGCTTTATAATAGGGAGATTTTTCTGAGAGATCGATATCGGTTTCATCATTTTAGAGAGGGGCATTGCTCATGTAATGATTACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

738

Amino Acids

82.22

Weight (kDa)

6.38

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 195 - 244 8.3e-12 PPR repeat family
PPR PF01535 198 - 227 1.7e-06 PPR repeat
PPR_2 PF13041 296 - 327 3.6e-06 PPR repeat family
PPR PF01535 299 - 327 1.1e-06 PPR repeat
PPR_2 PF13041 328 - 376 4.5e-08 PPR repeat family
PPR PF01535 331 - 358 4.5e-06 PPR repeat
PPR_2 PF13041 429 - 477 7.7e-10 PPR repeat family
E_motif PF20431 547 - 609 3.5e-22 E motif
Eplus_motif PF20430 614 - 640 6.1e-08 E+ motif
DYW_deaminase PF14432 645 - 738 2.4e-36 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 579, 2136
AasI GACNNNNNNGTC 1 cut(s) 1295
Acc16I TGCGCA 2 cut(s) 727, 1423
AccB1I GGYRCC 1 cut(s) 14
AccII CGCG 5 cut(s) 309, 311, 556, 1636, 2070
AclWI GGATC 2 cut(s) 1685, 1698
AcsI RAATTY 2 cut(s) 267, 601
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 4 cut(s) 314, 1111, 1633, 1716
AfiI CCNNNNNNNGG 2 cut(s) 447, 1743
AflIII ACRYGT 2 cut(s) 1162, 1224
AgsI TTSAA 9 cut(s) 338, 571, 769, 776, 791, 808, 851, 1195, 1924
AhdI GACNNNNNGTC 1 cut(s) 895
AjiI CACGTC 1 cut(s) 38
AjnI CCWGG 2 cut(s) 1498, 1807
AjuI GAANNNNNNNTTGG 2 cut(s) 725, 757
Alw21I GWGCWC 3 cut(s) 432, 1005, 1129
Alw26I GTCTC 2 cut(s) 1281, 2091
AlwI GGATC 2 cut(s) 1685, 1698
AlwNI CAGNNNCTG 2 cut(s) 215, 1763
Ama87I CYCGRG 2 cut(s) 232, 638
AoxI GGCC 2 cut(s) 1031, 1995
ApeKI GCWGC 7 cut(s) 212, 215, 965, 989, 1118, 1316, 1562
ApoI RAATTY 2 cut(s) 267, 601
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 6 cut(s) 311, 556, 728, 1307, 1424, 1638
AspS9I GGNCC 2 cut(s) 1079, 1996
AsuC2I CCSGG 1 cut(s) 434
AsuHPI GGTGA 5 cut(s) 481, 691, 1193, 1396, 1871
AvaI CYCGRG 2 cut(s) 232, 638
AvaII GGWCC 1 cut(s) 1079
BaeGI GKGCMC 1 cut(s) 386
BamHI GGATCC 1 cut(s) 1690
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 2 cut(s) 432, 1618
BbsI GAAGAC 2 cut(s) 578, 1045
Bbv12I GWGCWC 3 cut(s) 432, 1005, 1129
BbvCI CCTCAGC 1 cut(s) 1380
BbvI GCAGC 7 cut(s) 199, 202, 952, 976, 1130, 1303, 1549
BccI CCATC 4 cut(s) 134, 911, 925, 2062
BceAI ACGGC 1 cut(s) 630
BcgI CGANNNNNNTGC 2 cut(s) 1211, 1245
BciT130I CCWGG 2 cut(s) 1500, 1809
BciVI GTATCC 1 cut(s) 1152
BcnI CCSGG 1 cut(s) 434
BcoDI GTCTC 2 cut(s) 1281, 2091
BfaI CTAG 8 cut(s) 195, 951, 975, 1103, 1247, 1373, 1853, 2021
BfmI CTRYAG 4 cut(s) 9, 356, 1563, 1813
BfoI RGCGCY 1 cut(s) 1308
BfuI GTATCC 1 cut(s) 1152
BisI GCNGC 9 cut(s) 213, 216, 420, 966, 990, 1119, 1153, 1317, 1563
BlpI GCTNAGC 1 cut(s) 2115
BlsI GCNGC 9 cut(s) 214, 217, 421, 967, 991, 1120, 1154, 1318, 1564
BmcAI AGTACT 1 cut(s) 1111
Bme1390I CCNGG 3 cut(s) 434, 1500, 1809
Bme18I GGWCC 1 cut(s) 1079
BmeRI GACNNNNNGTC 1 cut(s) 895
BmeT110I CYCGRG 2 cut(s) 232, 638
BmgBI CACGTC 1 cut(s) 38
BmgT120I GGNCC 2 cut(s) 1079, 1996
BmiI GGNNCC 5 cut(s) 16, 1080, 1081, 1692, 1708
BmrFI CCNGG 3 cut(s) 434, 1500, 1809
BmrI ACTGGG 2 cut(s) 14, 326
BmsI GCATC 4 cut(s) 351, 844, 867, 1336
BmuI ACTGGG 2 cut(s) 14, 326
BpiI GAAGAC 2 cut(s) 578, 1045
BpmI CTGGAG 3 cut(s) 304, 1321, 1574
Bpu10I CCTNAGC 2 cut(s) 624, 1380
Bpu1102I GCTNAGC 1 cut(s) 2115
BpuEI CTTGAG 3 cut(s) 122, 398, 1280
BpuMI CCSGG 1 cut(s) 434
Bsa29I ATCGAT 1 cut(s) 2161
BsaAI YACGTR 1 cut(s) 1171
BsaBI GATNNNNATC 1 cut(s) 2163
BsaHI GRCGYC 1 cut(s) 422
BsaJI CCNNGG 5 cut(s) 441, 465, 639, 702, 1639
BsaXI ACNNNNNCTCC 6 cut(s) 84, 114, 851, 881, 1698, 1728
Bsc4I CCNNNNNNNGG 2 cut(s) 447, 1743
Bse1I ACTGG 3 cut(s) 20, 332, 2216
Bse3DI GCAATG 3 cut(s) 1332, 1349, 2191
Bse8I GATNNNNATC 1 cut(s) 2163
BseBI CCWGG 2 cut(s) 1500, 1809
BseCI ATCGAT 1 cut(s) 2161
BseDI CCNNGG 5 cut(s) 441, 465, 639, 702, 1639
BseGI GGATG 9 cut(s) 40, 499, 592, 882, 936, 1351, 1453, 1870, 1909
BseJI GATNNNNATC 1 cut(s) 2163
BseLI CCNNNNNNNGG 2 cut(s) 447, 1743
BseMI GCAATG 3 cut(s) 1332, 1349, 2191
BseMII CTCAG 4 cut(s) 638, 1371, 2121, 2144
BseNI ACTGG 3 cut(s) 20, 332, 2216
BseRI GAGGAG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 386
BseXI GCAGC 7 cut(s) 199, 202, 952, 976, 1130, 1303, 1549
BseYI CCCAGC 2 cut(s) 484, 1913
Bsh1236I CGCG 5 cut(s) 309, 311, 556, 1636, 2070
BshFI GGCC 2 cut(s) 1033, 1997
BshNI GGYRCC 1 cut(s) 14
BshVI ATCGAT 1 cut(s) 2161
BsiHKAI GWGCWC 3 cut(s) 432, 1005, 1129
BsiHKCI CYCGRG 2 cut(s) 232, 638
BsiSI CCGG 2 cut(s) 433, 881
BsiWI CGTACG 1 cut(s) 312
BslFI GGGAC 2 cut(s) 621, 1065
BslI CCNNNNNNNGG 2 cut(s) 447, 1743
BsmAI GTCTC 2 cut(s) 1281, 2091
BsmBI CGTCTC 1 cut(s) 1281
BsmFI GGGAC 2 cut(s) 621, 1065
BsmI GAATGC 1 cut(s) 342
BsnI GGCC 2 cut(s) 1033, 1997
BsoBI CYCGRG 2 cut(s) 232, 638
Bsp1286I GDGCHC 5 cut(s) 386, 432, 1005, 1129, 1618
Bsp143I GATC 3 cut(s) 1144, 1690, 2158
Bsp1720I GCTNAGC 1 cut(s) 2115
Bsp19I CCATGG 3 cut(s) 465, 702, 1639
BspANI GGCC 2 cut(s) 1033, 1997
BspCNI CTCAG 4 cut(s) 637, 1372, 2120, 2145
BspDI ATCGAT 1 cut(s) 2161
BspFNI CGCG 5 cut(s) 309, 311, 556, 1636, 2070
BspHI TCATGA 1 cut(s) 1843
BspLI GGNNCC 5 cut(s) 16, 1080, 1081, 1692, 1708
BspMAI CTGCAG 2 cut(s) 360, 1567
BspPI GGATC 2 cut(s) 1685, 1698
BspT107I GGYRCC 1 cut(s) 14
BsrDI GCAATG 3 cut(s) 1332, 1349, 2191
BsrI ACTGG 3 cut(s) 20, 332, 2216
BssECI CCNNGG 5 cut(s) 441, 465, 639, 702, 1639
BssMI GATC 3 cut(s) 1144, 1690, 2158
BssNI GRCGYC 1 cut(s) 422
BssT1I CCWWGG 4 cut(s) 441, 465, 702, 1639
Bst2UI CCWGG 2 cut(s) 1500, 1809
Bst4CI ACNGT 4 cut(s) 10, 64, 635, 1835
Bst6I CTCTTC 2 cut(s) 786, 1971
BstACI GRCGYC 1 cut(s) 422
BstAPI GCANNNNNTGC 1 cut(s) 1124
BstBAI YACGTR 1 cut(s) 1171
BstC8I GCNNGC 3 cut(s) 250, 724, 1519
BstDEI CTNAG 6 cut(s) 624, 1380, 2107, 2115, 2127, 2153
BstDSI CCRYGG 3 cut(s) 465, 702, 1639
BstF5I GGATG 9 cut(s) 40, 499, 592, 882, 936, 1351, 1453, 1870, 1909
BstFNI CGCG 5 cut(s) 309, 311, 556, 1636, 2070
BstH2I RGCGCY 1 cut(s) 1308
BstHHI GCGC 6 cut(s) 311, 556, 728, 1307, 1424, 1638
BstKTI GATC 3 cut(s) 1147, 1693, 2161
BstMAI GTCTC 2 cut(s) 1281, 2091
BstMBI GATC 3 cut(s) 1144, 1690, 2158
BstMWI GCNNNNNNNGC 6 cut(s) 734, 1124, 1313, 1322, 1428, 1664
BstNI CCWGG 2 cut(s) 1500, 1809
BstNSI RCATGY 4 cut(s) 1166, 1228, 1428, 1632
BstSCI CCNGG 3 cut(s) 432, 1498, 1807
BstSFI CTRYAG 4 cut(s) 9, 356, 1563, 1813
BstSLI GKGCMC 1 cut(s) 386
BstSNI TACGTA 1 cut(s) 1171
BstUI CGCG 5 cut(s) 309, 311, 556, 1636, 2070
BstV1I GCAGC 7 cut(s) 199, 202, 952, 976, 1130, 1303, 1549
BstV2I GAAGAC 2 cut(s) 578, 1045
BstX2I RGATCY 1 cut(s) 1690
BstYI RGATCY 1 cut(s) 1690
Bsu15I ATCGAT 1 cut(s) 2161
BsuI GTATCC 1 cut(s) 1152
BsuRI GGCC 2 cut(s) 1033, 1997
BsuTUI ATCGAT 1 cut(s) 2161
BtgI CCRYGG 3 cut(s) 465, 702, 1639
BtrI CACGTC 1 cut(s) 38
BtsCI GGATG 9 cut(s) 40, 499, 592, 882, 936, 1351, 1453, 1870, 1909
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 3 cut(s) 250, 724, 1519
CaiI CAGNNNCTG 2 cut(s) 215, 1763
CciI TCATGA 1 cut(s) 1843
CfoI GCGC 6 cut(s) 311, 556, 728, 1307, 1424, 1638
Cfr13I GGNCC 2 cut(s) 1079, 1996
ClaI ATCGAT 1 cut(s) 2161
CseI GACGC 1 cut(s) 411
Csp6I GTAC 4 cut(s) 313, 1110, 1632, 1715
CviQI GTAC 4 cut(s) 313, 1110, 1632, 1715
DdeI CTNAG 6 cut(s) 624, 1380, 2107, 2115, 2127, 2153
DpnI GATC 3 cut(s) 1146, 1692, 2160
DpnII GATC 3 cut(s) 1144, 1690, 2158
DrdI GACNNNNNNGTC 1 cut(s) 1295
DriI GACNNNNNGTC 1 cut(s) 895
DseDI GACNNNNNNGTC 1 cut(s) 1295
Eam1104I CTCTTC 2 cut(s) 786, 1971
Eam1105I GACNNNNNGTC 1 cut(s) 895
EarI CTCTTC 2 cut(s) 786, 1971
EciI GGCGGA 2 cut(s) 689, 752
Ecl136II GAGCTC 1 cut(s) 430
Eco105I TACGTA 1 cut(s) 1171
Eco130I CCWWGG 4 cut(s) 441, 465, 702, 1639
Eco24I GRGCYC 2 cut(s) 432, 1618
Eco32I GATATC 2 cut(s) 1888, 2165
Eco47I GGWCC 1 cut(s) 1079
Eco53kI GAGCTC 1 cut(s) 430
Eco88I CYCGRG 2 cut(s) 232, 638
EcoICRI GAGCTC 1 cut(s) 430
EcoO109I RGGNCCY 2 cut(s) 1079, 1996
EcoRI GAATTC 1 cut(s) 601
EcoRII CCWGG 2 cut(s) 1498, 1807
EcoRV GATATC 2 cut(s) 1888, 2165
EcoT14I CCWWGG 4 cut(s) 441, 465, 702, 1639
EcoT22I ATGCAT 2 cut(s) 1332, 1351
EcoT38I GRGCYC 2 cut(s) 432, 1618
ErhI CCWWGG 4 cut(s) 441, 465, 702, 1639
Esp3I CGTCTC 1 cut(s) 1281
FaqI GGGAC 2 cut(s) 621, 1065
FauI CCCGC 2 cut(s) 530, 833
Fnu4HI GCNGC 9 cut(s) 213, 216, 420, 966, 990, 1119, 1153, 1317, 1563
FokI GGATG 9 cut(s) 27, 506, 599, 889, 943, 1358, 1460, 1857, 1916
FriOI GRGCYC 2 cut(s) 432, 1618
Fsp4HI GCNGC 9 cut(s) 213, 216, 420, 966, 990, 1119, 1153, 1317, 1563
FspAI RTGCGCAY 1 cut(s) 1423
FspBI CTAG 8 cut(s) 195, 951, 975, 1103, 1247, 1373, 1853, 2021
FspI TGCGCA 2 cut(s) 727, 1423
GlaI GCGC 6 cut(s) 310, 555, 727, 1306, 1423, 1637
GluI GCNGC 9 cut(s) 213, 216, 420, 966, 990, 1119, 1153, 1317, 1563
GsaI CCCAGC 2 cut(s) 488, 1917
GsuI CTGGAG 3 cut(s) 304, 1321, 1574
HaeII RGCGCY 1 cut(s) 1308
HaeIII GGCC 2 cut(s) 1033, 1997
HapII CCGG 2 cut(s) 433, 881
HgaI GACGC 1 cut(s) 411
HhaI GCGC 6 cut(s) 311, 556, 728, 1307, 1424, 1638
Hin1I GRCGYC 1 cut(s) 422
Hin6I GCGC 6 cut(s) 309, 554, 726, 1305, 1422, 1636
HinP1I GCGC 6 cut(s) 309, 554, 726, 1305, 1422, 1636
HincII GTYRAC 1 cut(s) 1528
HindII GTYRAC 1 cut(s) 1528
HindIII AAGCTT 2 cut(s) 2117, 2129
HinfI GANTC 2 cut(s) 1787, 2080
HpaII CCGG 2 cut(s) 433, 881
HphI GGTGA 5 cut(s) 481, 691, 1193, 1396, 1871
Hpy166II GTNNAC 6 cut(s) 288, 396, 499, 903, 1168, 1528
Hpy188I TCNGA 5 cut(s) 427, 493, 930, 1934, 2154
Hpy188III TCNNGA 9 cut(s) 232, 272, 638, 980, 1247, 1300, 1553, 1791, 1844
Hpy8I GTNNAC 6 cut(s) 288, 396, 499, 903, 1168, 1528
Hpy99I CGWCG 2 cut(s) 266, 427
HpyAV CCTTC 9 cut(s) 86, 238, 577, 727, 747, 880, 1246, 1611, 1981
HpyCH4III ACNGT 4 cut(s) 10, 64, 635, 1835
HpyCH4IV ACGT 4 cut(s) 37, 891, 1170, 1290
HpyF10VI GCNNNNNNNGC 6 cut(s) 734, 1124, 1313, 1322, 1428, 1664
HpyF3I CTNAG 6 cut(s) 624, 1380, 2107, 2115, 2127, 2153
HpySE526I ACGT 4 cut(s) 37, 891, 1170, 1290
Hsp92I GRCGYC 1 cut(s) 422
HspAI GCGC 6 cut(s) 309, 554, 726, 1305, 1422, 1636
KflI GGGWCCC 1 cut(s) 1079
Kzo9I GATC 3 cut(s) 1144, 1690, 2158
LmnI GCTCC 7 cut(s) 427, 435, 1136, 1302, 1477, 1706, 2051
Lsp1109I GCAGC 7 cut(s) 199, 202, 952, 976, 1130, 1303, 1549
LweI GCATC 4 cut(s) 351, 844, 867, 1336
MaeI CTAG 8 cut(s) 195, 951, 975, 1103, 1247, 1373, 1853, 2021
MaeII ACGT 4 cut(s) 37, 891, 1170, 1290
MaeIII GTNAC 7 cut(s) 374, 592, 697, 1096, 1199, 1399, 1950
MalI GATC 3 cut(s) 1146, 1692, 2160
MboI GATC 3 cut(s) 1144, 1690, 2158
MfeI CAATTG 1 cut(s) 1130
MflI RGATCY 1 cut(s) 1690
MhlI GDGCHC 5 cut(s) 386, 432, 1005, 1129, 1618
MmeI TCCRAC 3 cut(s) 405, 630, 1881
Mph1103I ATGCAT 2 cut(s) 1332, 1351
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 4 cut(s) 507, 660, 1269, 1769
MslI CAYNNNNRTG 2 cut(s) 525, 1644
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 2 cut(s) 433, 881
MspR9I CCNGG 3 cut(s) 434, 1500, 1809
MunI CAATTG 1 cut(s) 1130
Mva1269I GAATGC 1 cut(s) 342
MvaI CCWGG 2 cut(s) 1500, 1809
MvnI CGCG 5 cut(s) 309, 311, 556, 1636, 2070
MwoI GCNNNNNNNGC 6 cut(s) 734, 1124, 1313, 1322, 1428, 1664
NciI CCSGG 1 cut(s) 434
NcoI CCATGG 3 cut(s) 465, 702, 1639
NdeII GATC 3 cut(s) 1144, 1690, 2158
NlaIV GGNNCC 5 cut(s) 16, 1080, 1081, 1692, 1708
NmeAIII GCCGAG 1 cut(s) 505
NmuCI GTSAC 5 cut(s) 374, 697, 1199, 1399, 1950
NsbI TGCGCA 2 cut(s) 727, 1423
NsiI ATGCAT 2 cut(s) 1332, 1351
NspI RCATGY 4 cut(s) 1166, 1228, 1428, 1632
PaeR7I CTCGAG 1 cut(s) 232
PagI TCATGA 1 cut(s) 1843
PciI ACATGT 2 cut(s) 1162, 1224
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PctI GAATGC 1 cut(s) 342
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 2 cut(s) 1787, 2080
Pfl23II CGTACG 1 cut(s) 312
PkrI GCNGC 9 cut(s) 214, 217, 421, 967, 991, 1120, 1154, 1318, 1564
Ppu21I YACGTR 1 cut(s) 1171
PpuMI RGGWCCY 1 cut(s) 1079
PscI ACATGT 2 cut(s) 1162, 1224
PsiI TTATAA 2 cut(s) 579, 2136
Psp124BI GAGCTC 1 cut(s) 432
Psp5II RGGWCCY 1 cut(s) 1079
Psp6I CCWGG 2 cut(s) 1498, 1807
PspFI CCCAGC 2 cut(s) 484, 1913
PspGI CCWGG 2 cut(s) 1498, 1807
PspLI CGTACG 1 cut(s) 312
PspN4I GGNNCC 5 cut(s) 16, 1080, 1081, 1692, 1708
PspPI GGNCC 2 cut(s) 1079, 1996
PspPPI RGGWCCY 1 cut(s) 1079
PstI CTGCAG 2 cut(s) 360, 1567
PstNI CAGNNNCTG 2 cut(s) 215, 1763
PsuI RGATCY 1 cut(s) 1690
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 4 cut(s) 314, 1111, 1633, 1716
RsaNI GTAC 4 cut(s) 313, 1110, 1632, 1715
RseI CAYNNNNRTG 2 cut(s) 525, 1644
SacI GAGCTC 1 cut(s) 432
SaqAI TTAA 4 cut(s) 507, 660, 1269, 1769
SatI GCNGC 9 cut(s) 213, 216, 420, 966, 990, 1119, 1153, 1317, 1563
Sau3AI GATC 3 cut(s) 1144, 1690, 2158
Sau96I GGNCC 2 cut(s) 1079, 1996
ScaI AGTACT 1 cut(s) 1111
ScrFI CCNGG 3 cut(s) 434, 1500, 1809
SduI GDGCHC 5 cut(s) 386, 432, 1005, 1129, 1618
SfaNI GCATC 4 cut(s) 351, 844, 867, 1336
SfcI CTRYAG 4 cut(s) 9, 356, 1563, 1813
Sfr274I CTCGAG 1 cut(s) 232
SinI GGWCC 1 cut(s) 1079
SlaI CTCGAG 1 cut(s) 232
SmiMI CAYNNNNRTG 2 cut(s) 525, 1644
SmlI CTYRAG 4 cut(s) 137, 232, 413, 1259
SmoI CTYRAG 4 cut(s) 137, 232, 413, 1259
SnaBI TACGTA 1 cut(s) 1171
SspI AATATT 1 cut(s) 1461
SspMI CTAG 8 cut(s) 195, 951, 975, 1103, 1247, 1373, 1853, 2021
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 3 cut(s) 432, 1498, 1807
StyI CCWWGG 4 cut(s) 441, 465, 702, 1639
TaaI ACNGT 4 cut(s) 10, 64, 635, 1835
TaiI ACGT 4 cut(s) 40, 894, 1173, 1293
TaqI TCGA 8 cut(s) 180, 233, 240, 261, 1221, 1683, 1824, 2161
TatI WGTACW 2 cut(s) 1109, 1714
TauI GCSGC 2 cut(s) 422, 1155
TfiI GAWTC 2 cut(s) 1787, 2080
Tru1I TTAA 4 cut(s) 507, 660, 1269, 1769
Tru9I TTAA 4 cut(s) 507, 660, 1269, 1769
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 5 cut(s) 374, 697, 1199, 1399, 1950
TseI GCWGC 7 cut(s) 212, 215, 965, 989, 1118, 1316, 1562
Tsp45I GTSAC 5 cut(s) 374, 697, 1199, 1399, 1950
TspDTI ATGAA 7 cut(s) 449, 698, 1032, 1202, 1832, 2000, 2162
TspRI CASTG 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 1079
XapI RAATTY 2 cut(s) 267, 601
XbaI TCTAGA 1 cut(s) 1246
XceI RCATGY 4 cut(s) 1166, 1228, 1428, 1632
XhoI CTCGAG 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 8 cut(s) 195, 951, 975, 1103, 1247, 1373, 1853, 2021
ZrmI AGTACT 1 cut(s) 1111
Zsp2I ATGCAT 2 cut(s) 1332, 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.