Rmu_sc0006032.1_g000001

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006032.1
OG0000686
Physical Location & Seq
Reverse (-)
10197 .. 10604
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006032.1_g000001.1.cds

Sequence Viewer

Length: 312 bp
atggggcaacatgttgatgttgctgatgtgcagtctgaaccaagttctgcttcagttgcaccgattgatgctaggaatgagatcgctgaggaagtaactgcaaatgtaggtgatctgaagctaacagatgatgattccaccgatcagtcaactgggggggatcaacatcctccttccaccgaggatgtggtcatgcttttggaaaagtgtcttttgcaagcattgcatacaacactgtcaaagacaaagaccttcccatgcccggaagcactctatggtatggtaaaggtcaaactatgttttaccttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

103

Amino Acids

11.05

Weight (kDa)

4.38

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 168
AcuI CTGAAG 2 cut(s) 36, 137
AfiI CCNNNNNNNGG 1 cut(s) 262
AflIII ACRYGT 1 cut(s) 10
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
AlwI GGATC 1 cut(s) 168
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 122
BbvCI CCTCAGC 1 cut(s) 87
BcnI CCSGG 1 cut(s) 263
BfaI CTAG 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 263
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 58
BmuI ACTGGG 1 cut(s) 162
Bpu10I CCTNAGC 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 263
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 221
Bse8I GATNNNNATC 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 2 cut(s) 166, 190
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 50
BsiSI CCGG 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 262
Bsp143I GATC 4 cut(s) 81, 112, 142, 160
BspCNI CTCAG 1 cut(s) 79
BspPI GGATC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 221
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 4 cut(s) 81, 112, 142, 160
Bst4CI ACNGT 1 cut(s) 237
BstAPI GCANNNNNTGC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 2 cut(s) 166, 190
BstKTI GATC 4 cut(s) 84, 115, 145, 163
BstMBI GATC 4 cut(s) 81, 112, 142, 160
BstMWI GCNNNNNNNGC 2 cut(s) 56, 223
BstNSI RCATGY 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 166, 190
BtsIMutI CAGTG 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 219
CviAII CATG 3 cut(s) 11, 193, 258
CviJI RGCY 1 cut(s) 121
CviKI_1 RGCY 1 cut(s) 121
DdeI CTNAG 1 cut(s) 87
DpnI GATC 4 cut(s) 83, 114, 144, 162
DpnII GATC 4 cut(s) 81, 112, 142, 160
Eco57I CTGAAG 2 cut(s) 36, 137
FaeI CATG 3 cut(s) 14, 196, 261
FaiI YATR 7 cut(s) 12, 194, 228, 259, 276, 281, 298
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FatI CATG 3 cut(s) 10, 192, 257
FokI GGATG 2 cut(s) 153, 197
FspBI CTAG 1 cut(s) 72
HapII CCGG 1 cut(s) 263
Hin1II CATG 3 cut(s) 14, 196, 261
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HinfI GANTC 1 cut(s) 134
HpaII CCGG 1 cut(s) 263
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 2 cut(s) 37, 117
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 2 cut(s) 183, 262
HpyCH4III ACNGT 1 cut(s) 237
HpyCH4V TGCA 5 cut(s) 31, 59, 101, 217, 226
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 223
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 3 cut(s) 14, 196, 261
Kzo9I GATC 4 cut(s) 81, 112, 142, 160
LpnPI CCDG 2 cut(s) 138, 276
LweI GCATC 1 cut(s) 58
MaeI CTAG 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 94
MalI GATC 4 cut(s) 83, 114, 144, 162
MboI GATC 4 cut(s) 81, 112, 142, 160
MnlI CCTC 3 cut(s) 82, 175, 180
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 56, 223
NciI CCSGG 1 cut(s) 263
NdeII GATC 4 cut(s) 81, 112, 142, 160
NlaIII CATG 3 cut(s) 14, 196, 261
NspI RCATGY 1 cut(s) 14
PciI ACATGT 1 cut(s) 10
PfeI GAWTC 1 cut(s) 134
PscI ACATGT 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 15
Sau3AI GATC 4 cut(s) 81, 112, 142, 160
ScrFI CCNGG 1 cut(s) 263
SetI ASST 5 cut(s) 112, 123, 254, 291, 308
SfaNI GCATC 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 15
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 237
TfiI GAWTC 1 cut(s) 134
TscAI CASTG 1 cut(s) 240
TspRI CASTG 1 cut(s) 240
XceI RCATGY 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.