Rmu_sc0009002.1_g000009

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009002.1
OG0000686
Physical Location & Seq
Forward (+)
29820 .. 32611
2792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009002.1_g000009.1.cds

Sequence Viewer

Length: 1245 bp
atggtgacttactttggcaaggaatcagttgagggcccttatgtgccaaatgcaggtttcttagaagatgctgtttttgaggatcctacattgtcagcagctcaaatttctgattcatttgatggtgcaaatgatggatcacatgatcaactgaatggcattgatgataaggaaatggggcgacatgttgatgttgctgatgtgcagtctgaaccaagttctgcttcagtttcaccgattgatgctaggaatgagattggtgcagaagtaactgcaaatgtaggtgatctgaagctaacagatgatgattccgccgatcagtcaaactatgttttaccttgtaggccttcaggcatcacactggacatcaagaaatcatcagacaagaaattatcaaagtggttacaagctaaatgttctacaggattgattagagtgaaggaagataaatataaggaggagtctgtattactttctgttaaccgcagccatccagattactcatctttcaagccagagaaacgacaagttgaagaagctgttcaaactggtgttcctgctgtcagtgaaagtcggtcggtcaaaatccttgaagtggctgtgatctataaaccaagtgtacatgtaaatccagtatttgcttctgtaggtgctgacacaggcgagctttacagtgcttcagatgccactgacattgtgtttaaatatgttgaaaaggaaaacctggttaagccgacagataaatccattgtgattttggatgcgatattgtgtgatgcactgttcaagggggccataaagaaaggttcaacataccctacagaaatccataaaagagacttgggagcagcatttgtgatccggatgcaagcccatcacattgtgacaaggggaaatgactcggttgttcgtaaaggtggtttgaaaacagtccagataatgacagaaaggcggcaaggtaataagaaaatgaccaagttatcaggactggaaacatttttagtggatcctgaagctttggcatcagagctacaaaagaagttcgcttgcagtacaacggtggcagaactaccaggattccttctgagagttactgatgaatacacttatgtttttccttttgataagaaggggcaggaggttctggttcaaggtggagtgattgagaatcttgcaaaacacttgattgaacaatatgggatcccaaagagatacattgaggttcttgacaaaaccaggagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

414

Amino Acids

45.51

Weight (kDa)

5.55

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 44
AccIII TCCGGA 1 cut(s) 861
AciI CCGC 3 cut(s) 312, 484, 952
AclWI GGATC 8 cut(s) 77, 90, 145, 853, 1001, 1014, 1195, 1208
AcsI RAATTY 1 cut(s) 105
AcuI CTGAAG 5 cut(s) 210, 311, 333, 663, 1032
AdeI CACNNNGTG 1 cut(s) 883
AfaI GTAC 2 cut(s) 621, 1054
AfiI CCNNNNNNNGG 2 cut(s) 53, 595
AflIII ACRYGT 2 cut(s) 184, 622
AjnI CCWGG 3 cut(s) 723, 1072, 1235
AjuI GAANNNNNNNTTGG 2 cut(s) 208, 240
AluBI AGCT 7 cut(s) 101, 295, 410, 539, 667, 1016, 1030
AluI AGCT 7 cut(s) 101, 295, 410, 539, 667, 1016, 1030
Alw26I GTCTC 1 cut(s) 831
AlwI GGATC 8 cut(s) 77, 90, 145, 853, 1001, 1014, 1195, 1208
Aor13HI TCCGGA 1 cut(s) 861
AoxI GGCC 3 cut(s) 34, 344, 792
ApaI GGGCCC 1 cut(s) 38
ApeKI GCWGC 3 cut(s) 98, 486, 848
ApoI RAATTY 1 cut(s) 105
Asp700I GAANNNNTTC 1 cut(s) 540
AspS9I GGNCC 3 cut(s) 34, 35, 792
AsuHPI GGTGA 3 cut(s) 16, 225, 296
BaeGI GKGCMC 1 cut(s) 38
BamHI GGATCC 3 cut(s) 82, 1006, 1200
BanII GRGCYC 1 cut(s) 38
BbvI GCAGC 3 cut(s) 110, 498, 860
BccI CCATC 4 cut(s) 116, 128, 498, 882
BciT130I CCWGG 3 cut(s) 725, 1074, 1237
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 831
BfaI CTAG 1 cut(s) 246
BfmI CTRYAG 3 cut(s) 420, 645, 819
BfuAI ACCTGC 1 cut(s) 44
BisI GCNGC 4 cut(s) 99, 487, 849, 953
BlsI GCNGC 4 cut(s) 100, 488, 850, 954
Bme1390I CCNGG 3 cut(s) 725, 1074, 1237
BmgT120I GGNCC 3 cut(s) 34, 35, 792
BmiI GGNNCC 5 cut(s) 36, 84, 793, 1008, 1202
BmrFI CCNGG 3 cut(s) 725, 1074, 1237
BmsI GCATC 8 cut(s) 58, 232, 363, 673, 751, 766, 855, 1031
BsaWI WCCGGW 1 cut(s) 861
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 595
Bse1I ACTGG 4 cut(s) 366, 553, 632, 993
BseAI TCCGGA 1 cut(s) 861
BseBI CCWGG 3 cut(s) 725, 1074, 1237
BseGI GGATG 3 cut(s) 490, 766, 870
BseLI CCNNNNNNNGG 2 cut(s) 53, 595
BseMII CTCAG 1 cut(s) 1076
BseNI ACTGG 4 cut(s) 366, 553, 632, 993
BseRI GAGGAG 1 cut(s) 473
BseSI GKGCMC 1 cut(s) 38
BseXI GCAGC 3 cut(s) 110, 498, 860
BsgI GTGCAG 2 cut(s) 224, 282
Bsh1285I CGRYCG 1 cut(s) 578
BshFI GGCC 3 cut(s) 36, 346, 794
BsiEI CGRYCG 1 cut(s) 578
BsiSI CCGG 1 cut(s) 862
BslI CCNNNNNNNGG 2 cut(s) 53, 595
BsmAI GTCTC 1 cut(s) 831
BsnI GGCC 3 cut(s) 36, 346, 794
Bsp120I GGGCCC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 38
Bsp13I TCCGGA 1 cut(s) 861
Bsp1407I TGTACA 1 cut(s) 619
Bsp143I GATC 9 cut(s) 82, 137, 145, 286, 316, 603, 858, 1006, 1200
BspACI CCGC 3 cut(s) 312, 484, 952
BspANI GGCC 3 cut(s) 36, 346, 794
BspCNI CTCAG 1 cut(s) 1077
BspEI TCCGGA 1 cut(s) 861
BspLI GGNNCC 5 cut(s) 36, 84, 793, 1008, 1202
BspMI ACCTGC 1 cut(s) 44
BspPI GGATC 8 cut(s) 77, 90, 145, 853, 1001, 1014, 1195, 1208
BsrGI TGTACA 1 cut(s) 619
BsrI ACTGG 4 cut(s) 366, 553, 632, 993
BssMI GATC 9 cut(s) 82, 137, 145, 286, 316, 603, 858, 1006, 1200
Bst2UI CCWGG 3 cut(s) 725, 1074, 1237
Bst4CI ACNGT 4 cut(s) 674, 783, 931, 1060
BstAUI TGTACA 1 cut(s) 619
BstC8I GCNNGC 3 cut(s) 665, 870, 1048
BstDEI CTNAG 2 cut(s) 61, 1085
BstF5I GGATG 3 cut(s) 490, 766, 870
BstKTI GATC 9 cut(s) 85, 140, 148, 289, 319, 606, 861, 1009, 1203
BstMAI GTCTC 1 cut(s) 831
BstMBI GATC 9 cut(s) 82, 137, 145, 286, 316, 603, 858, 1006, 1200
BstMCI CGRYCG 1 cut(s) 578
BstMWI GCNNNNNNNGC 1 cut(s) 683
BstNI CCWGG 3 cut(s) 725, 1074, 1237
BstNSI RCATGY 2 cut(s) 188, 626
BstSCI CCNGG 3 cut(s) 723, 1072, 1235
BstSFI CTRYAG 3 cut(s) 420, 645, 819
BstSLI GKGCMC 1 cut(s) 38
BstV1I GCAGC 3 cut(s) 110, 498, 860
BstX2I RGATCY 3 cut(s) 82, 1006, 1200
BstYI RGATCY 3 cut(s) 82, 1006, 1200
BsuRI GGCC 3 cut(s) 36, 346, 794
BtsCI GGATG 3 cut(s) 490, 766, 870
BtsIMutI CAGTG 5 cut(s) 359, 571, 679, 687, 779
BveI ACCTGC 1 cut(s) 44
Cac8I GCNNGC 3 cut(s) 665, 870, 1048
Cfr13I GGNCC 3 cut(s) 34, 35, 792
CsiI ACCWGGT 1 cut(s) 723
Csp6I GTAC 2 cut(s) 620, 1053
CspCI CAANNNNNGTGG 2 cut(s) 676, 711
CviAII CATG 3 cut(s) 143, 185, 623
CviQI GTAC 2 cut(s) 620, 1053
DdeI CTNAG 2 cut(s) 61, 1085
DpnI GATC 9 cut(s) 84, 139, 147, 288, 318, 605, 860, 1008, 1202
DpnII GATC 9 cut(s) 82, 137, 145, 286, 316, 603, 858, 1006, 1200
DraI TTTAAA 1 cut(s) 703
DraIII CACNNNGTG 1 cut(s) 883
EciI GGCGGA 1 cut(s) 301
Eco147I AGGCCT 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 38
Eco57I CTGAAG 5 cut(s) 210, 311, 333, 663, 1032
EcoO109I RGGNCCY 2 cut(s) 34, 35
EcoRII CCWGG 3 cut(s) 723, 1072, 1235
EcoT38I GRGCYC 1 cut(s) 38
FaeI CATG 3 cut(s) 146, 188, 626
FalI AAGNNNNNCTT 2 cut(s) 208, 240
FatI CATG 3 cut(s) 142, 184, 622
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 4 cut(s) 99, 487, 849, 953
FokI GGATG 3 cut(s) 477, 773, 877
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 4 cut(s) 99, 487, 849, 953
FspBI CTAG 1 cut(s) 246
GluI GCNGC 4 cut(s) 99, 487, 849, 953
HaeIII GGCC 3 cut(s) 36, 346, 794
HapII CCGG 1 cut(s) 862
Hin1II CATG 3 cut(s) 146, 188, 626
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HindIII AAGCTT 1 cut(s) 1014
HinfI GANTC 7 cut(s) 23, 113, 308, 461, 899, 1077, 1168
HpaI GTTAAC 1 cut(s) 481
HpaII CCGG 1 cut(s) 862
HphI GGTGA 3 cut(s) 16, 225, 296
Hpy166II GTNNAC 2 cut(s) 481, 620
Hpy188I TCNGA 7 cut(s) 112, 211, 291, 382, 682, 1027, 1086
Hpy188III TCNNGA 7 cut(s) 370, 494, 862, 934, 984, 1010, 1226
Hpy8I GTNNAC 2 cut(s) 481, 620
HpyAV CCTTC 4 cut(s) 357, 433, 1091, 1123
HpyCH4III ACNGT 4 cut(s) 674, 783, 931, 1060
HpyCH4V TGCA 9 cut(s) 53, 128, 205, 263, 275, 779, 868, 1050, 1175
HpyF10VI GCNNNNNNNGC 1 cut(s) 683
HpyF3I CTNAG 2 cut(s) 61, 1085
Hsp92II CATG 3 cut(s) 146, 188, 626
Kpn2I TCCGGA 1 cut(s) 861
Ksp22I TGATCA 1 cut(s) 145
KspAI GTTAAC 1 cut(s) 481
Kzo9I GATC 9 cut(s) 82, 137, 145, 286, 316, 603, 858, 1006, 1200
LmnI GCTCC 1 cut(s) 845
Lsp1109I GCAGC 3 cut(s) 110, 498, 860
LweI GCATC 8 cut(s) 58, 232, 363, 673, 751, 766, 855, 1031
MabI ACCWGGT 1 cut(s) 723
MaeI CTAG 1 cut(s) 246
MaeIII GTNAC 5 cut(s) 4, 268, 402, 883, 1090
MalI GATC 9 cut(s) 84, 139, 147, 288, 318, 605, 860, 1008, 1202
MboI GATC 9 cut(s) 82, 137, 145, 286, 316, 603, 858, 1006, 1200
MboII GAAGA 3 cut(s) 77, 455, 545
MflI RGATCY 3 cut(s) 82, 1006, 1200
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 2 cut(s) 105, 389
MlyI GAGTC 2 cut(s) 470, 893
MnlI CCTC 5 cut(s) 25, 73, 451, 1132, 1213
MroI TCCGGA 1 cut(s) 861
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 3 cut(s) 480, 702, 729
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 1 cut(s) 862
MspR9I CCNGG 3 cut(s) 725, 1074, 1237
MvaI CCWGG 3 cut(s) 725, 1074, 1237
MwoI GCNNNNNNNGC 1 cut(s) 683
NdeII GATC 9 cut(s) 82, 137, 145, 286, 316, 603, 858, 1006, 1200
NlaIII CATG 3 cut(s) 146, 188, 626
NlaIV GGNNCC 5 cut(s) 36, 84, 793, 1008, 1202
NmuCI GTSAC 2 cut(s) 4, 883
NspI RCATGY 2 cut(s) 188, 626
PceI AGGCCT 1 cut(s) 346
PciI ACATGT 2 cut(s) 184, 622
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 5 cut(s) 23, 113, 308, 1077, 1168
PkrI GCNGC 4 cut(s) 100, 488, 850, 954
PleI GAGTC 2 cut(s) 469, 893
PpsI GAGTC 2 cut(s) 469, 893
PscI ACATGT 2 cut(s) 184, 622
Psp6I CCWGG 3 cut(s) 723, 1072, 1235
PspGI CCWGG 3 cut(s) 723, 1072, 1235
PspN4I GGNNCC 5 cut(s) 36, 84, 793, 1008, 1202
PspOMI GGGCCC 1 cut(s) 34
PspPI GGNCC 3 cut(s) 34, 35, 792
PsuI RGATCY 3 cut(s) 82, 1006, 1200
RsaI GTAC 2 cut(s) 621, 1054
RsaNI GTAC 2 cut(s) 620, 1053
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 3 cut(s) 480, 702, 729
SatI GCNGC 4 cut(s) 99, 487, 849, 953
Sau3AI GATC 9 cut(s) 82, 137, 145, 286, 316, 603, 858, 1006, 1200
Sau96I GGNCC 3 cut(s) 34, 35, 792
SchI GAGTC 2 cut(s) 470, 893
ScrFI CCNGG 3 cut(s) 725, 1074, 1237
SduI GDGCHC 1 cut(s) 38
SexAI ACCWGGT 1 cut(s) 723
SfaNI GCATC 8 cut(s) 58, 232, 363, 673, 751, 766, 855, 1031
SfcI CTRYAG 3 cut(s) 420, 645, 819
SmiMI CAYNNNNRTG 1 cut(s) 189
Sse9I AATT 2 cut(s) 105, 389
SseBI AGGCCT 1 cut(s) 346
SsiI CCGC 3 cut(s) 312, 484, 952
SspMI CTAG 1 cut(s) 246
StuI AGGCCT 1 cut(s) 346
StyD4I CCNGG 3 cut(s) 723, 1072, 1235
TaaI ACNGT 4 cut(s) 674, 783, 931, 1060
TaqII GACCGA 2 cut(s) 564, 568
TasI AATT 2 cut(s) 105, 389
TatI WGTACW 2 cut(s) 619, 1052
TauI GCSGC 1 cut(s) 955
TfiI GAWTC 5 cut(s) 23, 113, 308, 1077, 1168
Tru1I TTAA 3 cut(s) 480, 702, 729
Tru9I TTAA 3 cut(s) 480, 702, 729
TscAI CASTG 5 cut(s) 366, 571, 679, 694, 786
TseFI GTSAC 2 cut(s) 4, 883
TseI GCWGC 3 cut(s) 98, 486, 848
Tsp45I GTSAC 2 cut(s) 4, 883
TspDTI ATGAA 2 cut(s) 105, 1113
TspRI CASTG 5 cut(s) 366, 571, 679, 694, 786
XapI RAATTY 1 cut(s) 105
XceI RCATGY 2 cut(s) 188, 626
XcmI CCANNNNNNNNNTGG 1 cut(s) 754
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.