RchiOBHm_Chr6g0249911

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000686
Physical Location & Seq
Reverse (-)
5672280 .. 5673360
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22403

Sequence Viewer

Length: 282 bp
ATGCTTTACTCCCTCTCAAGACATGTGGAGATAAAGGTTTCAAAGCATCAAAATCGAGTCCTTGTATATGGCATAGAGGGAGGCTTTCCTATGTTTTTTGATATTGATGGGTTTGGCAAAGAAATTTTTCCACAGGTATCATTTTATGCCCTCTGGGAGGTCCCTGATATCTTGCCTTCTTTCATGCTGAAAGGGGGCGAGGTTTCTCGATATGTTATTGGAGGGGCGGATTTGATGTTCCTGGTATCACCATACCTGCTGAAGGTCTACCATCATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

93

Amino Acids

10.66

Weight (kDa)

6.39

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 264
AccI GTMKAC 1 cut(s) 267
AciI CCGC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 123
AcuI CTGAAG 1 cut(s) 281
AfiI CCNNNNNNNGG 2 cut(s) 157, 262
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 1 cut(s) 42
AjnI CCWGG 1 cut(s) 240
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
ApoI RAATTY 1 cut(s) 123
Asp700I GAANNNNTTC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 240
AvaII GGWCC 1 cut(s) 160
BccI CCATC 2 cut(s) 101, 279
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 1 cut(s) 242
BfuAI ACCTGC 1 cut(s) 264
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 55
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 262
BseBI CCWGG 1 cut(s) 242
BseLI CCNNNNNNNGG 2 cut(s) 157, 262
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 157, 262
BsmFI GGGAC 1 cut(s) 146
BspACI CCGC 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 162
BspMI ACCTGC 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 242
BstENI CCTNNNNNAGG 2 cut(s) 155, 260
BstNI CCWGG 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 240
BveI ACCTGC 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 160
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 2 cut(s) 23, 184
CviJI RGCY 1 cut(s) 84
CviKI_1 RGCY 1 cut(s) 84
EciI GGCGGA 1 cut(s) 242
Eco32I GATATC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 281
EcoNI CCTNNNNNAGG 2 cut(s) 155, 260
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 240
EcoRV GATATC 1 cut(s) 169
FaeI CATG 2 cut(s) 26, 187
FaqI GGGAC 1 cut(s) 146
FatI CATG 2 cut(s) 22, 183
FblI GTMKAC 1 cut(s) 267
Hin1II CATG 2 cut(s) 26, 187
HinfI GANTC 1 cut(s) 57
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 1 cut(s) 268
Hpy188III TCNNGA 2 cut(s) 18, 207
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 2 cut(s) 186, 256
Hsp92II CATG 2 cut(s) 26, 187
LpnPI CCDG 6 cut(s) 119, 139, 177, 227, 254, 269
LweI GCATC 1 cut(s) 55
MluCI AATT 1 cut(s) 123
MlyI GAGTC 1 cut(s) 66
MnlI CCTC 7 cut(s) 23, 70, 74, 151, 161, 193, 215
MroXI GAANNNNTTC 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 242
NlaIII CATG 2 cut(s) 26, 187
NlaIV GGNNCC 1 cut(s) 162
NspI RCATGY 1 cut(s) 26
PciI ACATGT 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 126
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PpuMI RGGWCCY 1 cut(s) 160
PscI ACATGT 1 cut(s) 22
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 160
PspPPI RGGWCCY 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 160
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 242
SetI ASST 6 cut(s) 39, 138, 162, 204, 258, 267
SfaNI GCATC 1 cut(s) 55
SinI GGWCC 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 1 cut(s) 123
SsiI CCGC 1 cut(s) 227
StyD4I CCNGG 1 cut(s) 240
TaqI TCGA 2 cut(s) 55, 208
TasI AATT 1 cut(s) 123
TspDTI ATGAA 2 cut(s) 172, 267
VpaK11BI GGWCC 1 cut(s) 160
XagI CCTNNNNNAGG 2 cut(s) 155, 260
XapI RAATTY 1 cut(s) 123
XceI RCATGY 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.