Rh6AG000200

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000686
Physical Location & Seq
Reverse (-)
145986 .. 146411
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG000200.1

Sequence Viewer

Length: 426 bp
ATGGGGCAACGTGTTGATGTTGCTGATGTGCAGTCTGAACCAAGTTCTGCTCCGGTTGCACCGATTAATGTTAGGAATGAGATTGCTGAGGAAGTAACTGCAAATGTAGGTGATCTGAAGCTAACAGATGATGATTCCGCTGATCAGTCGACTGGGGAGGATCAACAACCTCTTTCTGCTGAGGATGTTGACATGCTTTTGGAAAAATGCCTCTTGCAAGCATTGCATACAACTGTCAAAGACAAAGACCTTCCCATGCCCGGAAGCACTCTATGGTATGGTAAAGATATAATCTTTGTGAAACTTTGCATGATCTCTCTCTACCCTTCCTGTGCATATACTTCATTTATAAGAACTCATGATTTGTTTTGTGGTTCTGCAGGTCAAACTATGTTTTACCTTGTGGTTCTTCAGGCATCACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

141

Amino Acids

15.43

Weight (kDa)

4.32

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 350
Acc36I ACCTGC 1 cut(s) 371
AccI GTMKAC 1 cut(s) 149
AciI CCGC 1 cut(s) 138
AclWI GGATC 1 cut(s) 168
AcuI CTGAAG 2 cut(s) 137, 395
AfiI CCNNNNNNNGG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 10
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
AlwI GGATC 1 cut(s) 168
AseI ATTAAT 1 cut(s) 66
AsuC2I CCSGG 1 cut(s) 261
AsuHPI GGTGA 1 cut(s) 122
BbvCI CCTCAGC 2 cut(s) 87, 180
BclI TGATCA 1 cut(s) 142
BcnI CCSGG 1 cut(s) 261
BfaI CTAG 1 cut(s) 424
BfmI CTRYAG 1 cut(s) 378
BfuAI ACCTGC 1 cut(s) 371
Bme1390I CCNGG 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 261
BmrI ACTGGG 1 cut(s) 162
BmuI ACTGGG 1 cut(s) 162
Bpu10I CCTNAGC 2 cut(s) 87, 180
BpuMI CCSGG 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 221
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 2 cut(s) 78, 171
BseNI ACTGG 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 50
BsiSI CCGG 2 cut(s) 53, 261
BslI CCNNNNNNNGG 1 cut(s) 260
Bsp143I GATC 4 cut(s) 112, 142, 160, 312
BspACI CCGC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 79, 172
BspHI TCATGA 1 cut(s) 358
BspMAI CTGCAG 1 cut(s) 382
BspMI ACCTGC 1 cut(s) 371
BspPI GGATC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 221
BsrI ACTGG 1 cut(s) 157
BssMI GATC 4 cut(s) 112, 142, 160, 312
Bst4CI ACNGT 1 cut(s) 235
BstAPI GCANNNNNTGC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 87, 180
BstF5I GGATG 1 cut(s) 190
BstKTI GATC 4 cut(s) 115, 145, 163, 315
BstMBI GATC 4 cut(s) 112, 142, 160, 312
BstMWI GCNNNNNNNGC 2 cut(s) 56, 223
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 378
BtsCI GGATG 1 cut(s) 190
BveI ACCTGC 1 cut(s) 371
Cac8I GCNNGC 1 cut(s) 219
CciI TCATGA 1 cut(s) 358
CviAII CATG 4 cut(s) 193, 256, 310, 359
CviJI RGCY 1 cut(s) 121
CviKI_1 RGCY 1 cut(s) 121
DdeI CTNAG 2 cut(s) 87, 180
DpnI GATC 4 cut(s) 114, 144, 162, 314
DpnII GATC 4 cut(s) 112, 142, 160, 312
Eco57I CTGAAG 2 cut(s) 137, 395
FaeI CATG 4 cut(s) 196, 259, 313, 362
FatI CATG 4 cut(s) 192, 255, 309, 358
FbaI TGATCA 1 cut(s) 142
FblI GTMKAC 1 cut(s) 149
FokI GGATG 1 cut(s) 197
FspBI CTAG 1 cut(s) 424
HapII CCGG 2 cut(s) 53, 261
Hin1II CATG 4 cut(s) 196, 259, 313, 362
HincII GTYRAC 2 cut(s) 150, 190
HindII GTYRAC 2 cut(s) 150, 190
HinfI GANTC 1 cut(s) 134
HpaII CCGG 2 cut(s) 53, 261
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 150, 190
Hpy188I TCNGA 2 cut(s) 37, 117
Hpy188III TCNNGA 1 cut(s) 359
Hpy8I GTNNAC 2 cut(s) 150, 190
HpyAV CCTTC 2 cut(s) 260, 336
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 8 cut(s) 31, 59, 101, 217, 226, 309, 335, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 223
HpyF3I CTNAG 2 cut(s) 87, 180
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 4 cut(s) 196, 259, 313, 362
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 4 cut(s) 112, 142, 160, 312
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 6 cut(s) 66, 138, 274, 343, 366, 398
MaeI CTAG 1 cut(s) 424
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 94
MalI GATC 4 cut(s) 114, 144, 162, 314
MboI GATC 4 cut(s) 112, 142, 160, 312
MboII GAAGA 1 cut(s) 401
MnlI CCTC 5 cut(s) 82, 151, 175, 180, 221
MseI TTAA 1 cut(s) 66
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 2 cut(s) 53, 261
MspR9I CCNGG 1 cut(s) 261
MwoI GCNNNNNNNGC 2 cut(s) 56, 223
NciI CCSGG 1 cut(s) 261
NdeII GATC 4 cut(s) 112, 142, 160, 312
NlaIII CATG 4 cut(s) 196, 259, 313, 362
NspI RCATGY 1 cut(s) 196
PagI TCATGA 1 cut(s) 358
PfeI GAWTC 1 cut(s) 134
PshBI ATTAAT 1 cut(s) 66
PsiI TTATAA 1 cut(s) 350
PstI CTGCAG 1 cut(s) 382
SalI GTCGAC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 66
Sau3AI GATC 4 cut(s) 112, 142, 160, 312
ScrFI CCNGG 1 cut(s) 261
SetI ASST 7 cut(s) 13, 112, 123, 172, 252, 385, 402
SfcI CTRYAG 1 cut(s) 378
SsiI CCGC 1 cut(s) 138
SspMI CTAG 1 cut(s) 424
StyD4I CCNGG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 149
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 333
VspI ATTAAT 1 cut(s) 66
XceI RCATGY 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 149
XspI CTAG 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.