Rh6BG005600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000686
Physical Location & Seq
Forward (+)
858275 .. 860171
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG005600.1

Sequence Viewer

Length: 696 bp
ATGCCTACCGGTGTGATACTTAATTGCAATTTCACGAAATCACCGACTCTGTTAATAAACACAGAGAGTCGTCCAACTCGGGATAAGCATAGAAAGTATGAATGGCATTTGGAAACACCACCAGCTCCGCTTGTTTCCCGCGTTTCTTCAATCCCTCTTAGTACCTCTTCTGCCAATCTTGCAACGGATCAAATCCCCCGACAACCACAATCGTCGCCGGAAAATCAACCCCCGAAATATCCACCGCGTTCGGCCCGAACACATTCACCACCGGATGATCCCGAAACTCAATCTCGTCTCCAGCGGCAAAAACGCCTTCCACATACAGTCCGTCCGCTCTATGTTCACCAGCGGCACCCTCTTCAATCCCGTCTCCGATTCCGTCCGCTCCTCTCCACCGAAAAACGGCTGAATCGCCAACATTCCGACCACCTTCAGCTCCCGAAACTCGTGCCCGCTCGCTCTGATCGCCAAGTGGTGCGCTATGTTCCCGCCGGCGCTGTCCCCGGCCAGAAAACACTGCCCGAGATTCGCGTCTTCGATGAGCTTGAGGACGTCGAAACCGTCGTCGTACTGGCACGGATATCGATGCTCCGGCGCGAGGCGGTAGTTGACGGAGACGACGACGGGGGGGAGCTCCCGAGCGAGGCGTTGACAGAAGTCGTCGTAGGGTTCAAGAGAGAGAGGGAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

26.32

Weight (kDa)

9.66

Isoelectric Point (pI)

71.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 558
AccB1I GGYRCC 1 cut(s) 354
AccBSI CCGCTC 3 cut(s) 337, 388, 458
AccII CGCG 4 cut(s) 141, 247, 534, 600
AclWI GGATC 2 cut(s) 195, 272
AcoI YGGCCR 1 cut(s) 508
AcuI CTGAAG 1 cut(s) 419
AcyI GRCGYC 1 cut(s) 555
AfaI GTAC 2 cut(s) 163, 573
AfiI CCNNNNNNNGG 3 cut(s) 405, 601, 646
AgeI ACCGGT 1 cut(s) 8
AgsI TTSAA 3 cut(s) 150, 365, 676
AluBI AGCT 4 cut(s) 125, 439, 547, 637
AluI AGCT 4 cut(s) 125, 439, 547, 637
Alw21I GWGCWC 1 cut(s) 639
Alw26I GTCTC 3 cut(s) 302, 377, 612
AlwI GGATC 2 cut(s) 195, 272
Ama87I CYCGRG 3 cut(s) 78, 524, 640
AoxI GGCC 2 cut(s) 252, 508
ArsI GACNNNNNNTTYG 2 cut(s) 552, 584
AsiGI ACCGGT 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 262
AspLEI GCGC 3 cut(s) 483, 500, 600
AspS9I GGNCC 1 cut(s) 253
AsuC2I CCSGG 1 cut(s) 507
AsuHPI GGTGA 3 cut(s) 33, 258, 338
AvaI CYCGRG 3 cut(s) 78, 524, 640
BaeGI GKGCMC 1 cut(s) 456
BanI GGYRCC 1 cut(s) 354
BanII GRGCYC 1 cut(s) 639
BauI CACGAG 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 529
Bbv12I GWGCWC 1 cut(s) 639
BceAI ACGGC 1 cut(s) 422
BcgI CGANNNNNNTGC 4 cut(s) 433, 467, 567, 601
BcnI CCSGG 1 cut(s) 507
BcoDI GTCTC 3 cut(s) 302, 377, 612
BfoI RGCGCY 1 cut(s) 501
BisI GCNGC 2 cut(s) 305, 353
BlsI GCNGC 2 cut(s) 306, 354
Bme1390I CCNGG 1 cut(s) 507
BmeT110I CYCGRG 3 cut(s) 78, 524, 640
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 356
BmrFI CCNGG 1 cut(s) 507
BmsI GCATC 1 cut(s) 579
BoxI GACNNNNGTC 1 cut(s) 659
BpiI GAAGAC 1 cut(s) 529
BpmI CTGGAG 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 569
BpuMI CCSGG 1 cut(s) 507
Bsa29I ATCGAT 1 cut(s) 587
BsaHI GRCGYC 1 cut(s) 555
BsaJI CCNNGG 1 cut(s) 505
BsaWI WCCGGW 2 cut(s) 8, 271
Bsc4I CCNNNNNNNGG 3 cut(s) 405, 601, 646
Bse118I RCCGGY 2 cut(s) 8, 494
Bse1I ACTGG 1 cut(s) 579
BseCI ATCGAT 1 cut(s) 587
BseDI CCNNGG 1 cut(s) 505
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 3 cut(s) 405, 601, 646
BseNI ACTGG 1 cut(s) 579
BseRI GAGGAG 1 cut(s) 380
BseSI GKGCMC 1 cut(s) 456
Bsh1236I CGCG 4 cut(s) 141, 247, 534, 600
BshFI GGCC 2 cut(s) 254, 510
BshNI GGYRCC 1 cut(s) 354
BshTI ACCGGT 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 587
BsiHKAI GWGCWC 1 cut(s) 639
BsiHKCI CYCGRG 3 cut(s) 78, 524, 640
BsiSI CCGG 6 cut(s) 9, 218, 272, 495, 507, 595
BslFI GGGAC 1 cut(s) 488
BslI CCNNNNNNNGG 3 cut(s) 405, 601, 646
BsmAI GTCTC 3 cut(s) 302, 377, 612
BsmBI CGTCTC 3 cut(s) 302, 377, 612
BsmFI GGGAC 1 cut(s) 488
BsnI GGCC 2 cut(s) 254, 510
BsoBI CYCGRG 3 cut(s) 78, 524, 640
Bsp1286I GDGCHC 2 cut(s) 456, 639
Bsp143I GATC 3 cut(s) 187, 277, 466
BspANI GGCC 2 cut(s) 254, 510
BspDI ATCGAT 1 cut(s) 587
BspFNI CGCG 4 cut(s) 141, 247, 534, 600
BspLI GGNNCC 1 cut(s) 356
BspPI GGATC 2 cut(s) 195, 272
BspT107I GGYRCC 1 cut(s) 354
BsrBI CCGCTC 3 cut(s) 337, 388, 458
BsrFI RCCGGY 2 cut(s) 8, 494
BsrI ACTGG 1 cut(s) 579
BssAI RCCGGY 2 cut(s) 8, 494
BssECI CCNNGG 1 cut(s) 505
BssMI GATC 3 cut(s) 187, 277, 466
BssNI GRCGYC 1 cut(s) 555
BssSI CACGAG 1 cut(s) 449
Bst2BI CACGAG 1 cut(s) 449
Bst4CI ACNGT 2 cut(s) 328, 565
Bst6I CTCTTC 2 cut(s) 172, 366
BstACI GRCGYC 1 cut(s) 555
BstC8I GCNNGC 3 cut(s) 456, 460, 496
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 280
BstFNI CGCG 4 cut(s) 141, 247, 534, 600
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 3 cut(s) 483, 500, 600
BstKTI GATC 3 cut(s) 190, 280, 469
BstMAI GTCTC 3 cut(s) 302, 377, 612
BstMBI GATC 3 cut(s) 187, 277, 466
BstMWI GCNNNNNNNGC 2 cut(s) 179, 468
BstPAI GACNNNNGTC 1 cut(s) 659
BstSCI CCNGG 1 cut(s) 505
BstSLI GKGCMC 1 cut(s) 456
BstUI CGCG 4 cut(s) 141, 247, 534, 600
BstV2I GAAGAC 1 cut(s) 529
Bsu15I ATCGAT 1 cut(s) 587
BsuRI GGCC 2 cut(s) 254, 510
BsuTUI ATCGAT 1 cut(s) 587
BtsCI GGATG 1 cut(s) 280
BtsI GCAGTG 1 cut(s) 518
BtsIMutI CAGTG 1 cut(s) 518
Cac8I GCNNGC 3 cut(s) 456, 460, 496
CfoI GCGC 3 cut(s) 483, 500, 600
Cfr10I RCCGGY 2 cut(s) 8, 494
Cfr13I GGNCC 1 cut(s) 253
ClaI ATCGAT 1 cut(s) 587
CseI GACGC 1 cut(s) 523
Csp6I GTAC 2 cut(s) 162, 572
CspAI ACCGGT 1 cut(s) 8
CviJI RGCY 7 cut(s) 125, 254, 409, 439, 510, 547, 637
CviKI_1 RGCY 7 cut(s) 125, 254, 409, 439, 510, 547, 637
CviQI GTAC 2 cut(s) 162, 572
DdeI CTNAG 1 cut(s) 158
DpnI GATC 3 cut(s) 189, 279, 468
DpnII GATC 3 cut(s) 187, 277, 466
EaeI YGGCCR 1 cut(s) 508
Eam1104I CTCTTC 2 cut(s) 172, 366
EarI CTCTTC 2 cut(s) 172, 366
Ecl136II GAGCTC 1 cut(s) 637
Eco24I GRGCYC 1 cut(s) 639
Eco32I GATATC 1 cut(s) 585
Eco53kI GAGCTC 1 cut(s) 637
Eco57I CTGAAG 1 cut(s) 419
Eco88I CYCGRG 3 cut(s) 78, 524, 640
EcoICRI GAGCTC 1 cut(s) 637
EcoRV GATATC 1 cut(s) 585
EcoT38I GRGCYC 1 cut(s) 639
Esp3I CGTCTC 3 cut(s) 302, 377, 612
FaiI YATR 5 cut(s) 90, 99, 324, 342, 486
FaqI GGGAC 1 cut(s) 488
FauI CCCGC 3 cut(s) 146, 463, 499
Fnu4HI GCNGC 2 cut(s) 305, 353
FokI GGATG 1 cut(s) 287
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 2 cut(s) 305, 353
GlaI GCGC 3 cut(s) 482, 499, 599
GluI GCNGC 2 cut(s) 305, 353
GsuI CTGGAG 1 cut(s) 284
HaeII RGCGCY 1 cut(s) 501
HaeIII GGCC 2 cut(s) 254, 510
HapII CCGG 6 cut(s) 9, 218, 272, 495, 507, 595
HgaI GACGC 1 cut(s) 523
HhaI GCGC 3 cut(s) 483, 500, 600
Hin1I GRCGYC 1 cut(s) 555
Hin6I GCGC 3 cut(s) 481, 498, 598
HinP1I GCGC 3 cut(s) 481, 498, 598
HincII GTYRAC 2 cut(s) 613, 654
HindII GTYRAC 2 cut(s) 613, 654
HinfI GANTC 5 cut(s) 46, 67, 378, 412, 529
HpaII CCGG 6 cut(s) 9, 218, 272, 495, 507, 595
HphI GGTGA 3 cut(s) 33, 258, 338
Hpy166II GTNNAC 3 cut(s) 346, 613, 654
Hpy188I TCNGA 3 cut(s) 377, 427, 466
Hpy188III TCNNGA 6 cut(s) 34, 80, 281, 442, 640, 676
Hpy8I GTNNAC 3 cut(s) 346, 613, 654
Hpy99I CGWCG 7 cut(s) 217, 560, 569, 572, 626, 629, 668
HpyAV CCTTC 2 cut(s) 326, 443
HpyCH4III ACNGT 2 cut(s) 328, 565
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 2 cut(s) 27, 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 468
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 555
Hsp92I GRCGYC 1 cut(s) 555
HspAI GCGC 3 cut(s) 481, 498, 598
KroI GCCGGC 1 cut(s) 494
KroNI GCCGGC 1 cut(s) 496
Kzo9I GATC 3 cut(s) 187, 277, 466
LmnI GCTCC 6 cut(s) 130, 393, 444, 597, 634, 642
LweI GCATC 1 cut(s) 579
MaeII ACGT 1 cut(s) 555
MalI GATC 3 cut(s) 189, 279, 468
MbiI CCGCTC 3 cut(s) 337, 388, 458
MboI GATC 3 cut(s) 187, 277, 466
MboII GAAGA 4 cut(s) 138, 159, 353, 529
MhlI GDGCHC 2 cut(s) 456, 639
MluCI AATT 2 cut(s) 22, 28
MlyI GAGTC 2 cut(s) 40, 76
MmeI TCCRAC 2 cut(s) 98, 450
MnlI CCTC 9 cut(s) 165, 175, 369, 401, 544, 595, 640, 678, 682
MreI CGCCGGCG 1 cut(s) 494
MroNI GCCGGC 1 cut(s) 494
MroXI GAANNNNTTC 1 cut(s) 262
MseI TTAA 2 cut(s) 21, 53
MspA1I CMGCKG 2 cut(s) 304, 352
MspI CCGG 6 cut(s) 9, 218, 272, 495, 507, 595
MspR9I CCNGG 1 cut(s) 507
MvnI CGCG 4 cut(s) 141, 247, 534, 600
MwoI GCNNNNNNNGC 2 cut(s) 179, 468
NaeI GCCGGC 1 cut(s) 496
NciI CCSGG 1 cut(s) 507
NdeII GATC 3 cut(s) 187, 277, 466
NgoMIV GCCGGC 1 cut(s) 494
NlaIV GGNNCC 1 cut(s) 356
PcsI WCGNNNNNNNCGW 4 cut(s) 41, 561, 564, 621
PdiI GCCGGC 1 cut(s) 496
PdmI GAANNNNTTC 1 cut(s) 262
PfeI GAWTC 3 cut(s) 378, 412, 529
PinAI ACCGGT 1 cut(s) 8
PkrI GCNGC 2 cut(s) 306, 354
PleI GAGTC 2 cut(s) 40, 75
PpsI GAGTC 2 cut(s) 40, 75
PshAI GACNNNNGTC 1 cut(s) 659
Psp124BI GAGCTC 1 cut(s) 639
PspN4I GGNNCC 1 cut(s) 356
PspPI GGNCC 1 cut(s) 253
RsaI GTAC 2 cut(s) 163, 573
RsaNI GTAC 2 cut(s) 162, 572
SacI GAGCTC 1 cut(s) 639
SaqAI TTAA 2 cut(s) 21, 53
SatI GCNGC 2 cut(s) 305, 353
Sau3AI GATC 3 cut(s) 187, 277, 466
Sau96I GGNCC 1 cut(s) 253
SchI GAGTC 2 cut(s) 40, 76
ScrFI CCNGG 1 cut(s) 507
SduI GDGCHC 2 cut(s) 456, 639
SetI ASST 7 cut(s) 127, 167, 435, 441, 549, 558, 639
SfaNI GCATC 1 cut(s) 579
SgrAI CRCCGGYG 1 cut(s) 494
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 2 cut(s) 22, 28
SstI GAGCTC 1 cut(s) 639
StyD4I CCNGG 1 cut(s) 505
TaaI ACNGT 2 cut(s) 328, 565
TaiI ACGT 1 cut(s) 558
TaqI TCGA 3 cut(s) 540, 558, 587
TasI AATT 2 cut(s) 22, 28
TauI GCSGC 2 cut(s) 307, 355
TfiI GAWTC 3 cut(s) 378, 412, 529
Tru1I TTAA 2 cut(s) 21, 53
Tru9I TTAA 2 cut(s) 21, 53
TscAI CASTG 1 cut(s) 525
TspDTI ATGAA 1 cut(s) 114
TspGWI ACGGA 5 cut(s) 200, 320, 371, 595, 630
TspRI CASTG 1 cut(s) 525
XmnI GAANNNNTTC 1 cut(s) 262
ZraI GACGTC 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.