RchiOBHm_Chr6g0249851

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000686
Physical Location & Seq
Reverse (-)
5657989 .. 5659903
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22397

Sequence Viewer

Length: 429 bp
ATGCCTTTTGCAAGCATTGCATACAACAGTCAAAGACAAAGACCTTCCCATGCCCGGAAGCACTCTATGGTTTGGTCAAACTATGTTTTACCTTGTAGGCCTTCAGGCATCACACTAGACATCAAGAAATCATCACACAAGAAATTATCAAAGTGGTTACAAGCTAAATGTTCTACAGGATTGGTGCGTTATGCTTTCATTTTCCTCTTTCTCATAAGTGGCCACTTTTTTAGTTTTAACCTAGTCATTTTGAGGGTTAGCTGTATTGGTATTTTTGTAGTTTTGATTCTGAACACATTCTGCACATCCTTATGGTGTTGTCAGCGGTCAGCACCTTTATGTATTAATGCATGGTTTTGCTGCTCTATTCTTGACTCTGGTGATTCTTCATTGTATTTGATAGTCATAGTGCATACGTGGTTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

142

Amino Acids

16.22

Weight (kDa)

9.56

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_eIF2D PF25304 22 - 63 2.7e-14 eIF2D winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 325
AcoI YGGCCR 1 cut(s) 220
AcuI CTGAAG 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 54
AluBI AGCT 2 cut(s) 164, 261
AluI AGCT 2 cut(s) 164, 261
AoxI GGCC 2 cut(s) 98, 220
ApeKI GCWGC 1 cut(s) 360
AseI ATTAAT 1 cut(s) 345
Asp700I GAANNNNTTC 1 cut(s) 296
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 392
BalI TGGCCA 1 cut(s) 222
BbvI GCAGC 1 cut(s) 347
BcnI CCSGG 1 cut(s) 55
BfaI CTAG 2 cut(s) 116, 242
BfmI CTRYAG 1 cut(s) 174
BisI GCNGC 1 cut(s) 361
BlsI GCNGC 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 55
BmsI GCATC 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 55
BsaAI YACGTR 1 cut(s) 417
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse3DI GCAATG 1 cut(s) 15
BseGI GGATG 1 cut(s) 305
BseLI CCNNNNNNNGG 1 cut(s) 54
BseMI GCAATG 1 cut(s) 15
BseXI GCAGC 1 cut(s) 347
BsgI GTGCAG 1 cut(s) 286
BshFI GGCC 2 cut(s) 100, 222
BsiSI CCGG 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 54
BsnI GGCC 2 cut(s) 100, 222
BspACI CCGC 1 cut(s) 325
BspANI GGCC 2 cut(s) 100, 222
BsrDI GCAATG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 417
BstC8I GCNNGC 1 cut(s) 13
BstF5I GGATG 1 cut(s) 305
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 347
BsuRI GGCC 2 cut(s) 100, 222
BtsCI GGATG 1 cut(s) 305
Cac8I GCNNGC 1 cut(s) 13
CviAII CATG 2 cut(s) 50, 351
CviJI RGCY 4 cut(s) 100, 164, 222, 261
CviKI_1 RGCY 4 cut(s) 100, 164, 222, 261
EaeI YGGCCR 1 cut(s) 220
Eco147I AGGCCT 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 352
FaeI CATG 2 cut(s) 53, 354
FatI CATG 2 cut(s) 49, 350
Fnu4HI GCNGC 1 cut(s) 361
FokI GGATG 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 361
FspBI CTAG 2 cut(s) 116, 242
GluI GCNGC 1 cut(s) 361
HaeIII GGCC 2 cut(s) 100, 222
HapII CCGG 1 cut(s) 55
Hin1II CATG 2 cut(s) 53, 354
HinfI GANTC 3 cut(s) 286, 374, 383
HpaII CCGG 1 cut(s) 55
HphI GGTGA 1 cut(s) 392
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 2 cut(s) 124, 371
HpyAV CCTTC 2 cut(s) 54, 111
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 5 cut(s) 11, 20, 303, 350, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 2 cut(s) 53, 354
LpnPI CCDG 4 cut(s) 68, 90, 162, 363
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 1 cut(s) 117
MaeI CTAG 2 cut(s) 116, 242
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 156
MboII GAAGA 1 cut(s) 378
MlsI TGGCCA 1 cut(s) 222
MluCI AATT 1 cut(s) 143
MluNI TGGCCA 1 cut(s) 222
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 2 cut(s) 215, 246
Mox20I TGGCCA 1 cut(s) 222
Mph1103I ATGCAT 1 cut(s) 352
MroXI GAANNNNTTC 1 cut(s) 296
MscI TGGCCA 1 cut(s) 222
MseI TTAA 3 cut(s) 237, 345, 427
MslI CAYNNNNRTG 2 cut(s) 310, 337
Msp20I TGGCCA 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 325
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 17
NciI CCSGG 1 cut(s) 55
NlaIII CATG 2 cut(s) 53, 354
NsiI ATGCAT 1 cut(s) 352
PceI AGGCCT 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 296
PfeI GAWTC 2 cut(s) 286, 383
PkrI GCNGC 1 cut(s) 362
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
Ppu21I YACGTR 1 cut(s) 417
PshBI ATTAAT 1 cut(s) 345
RseI CAYNNNNRTG 2 cut(s) 310, 337
SaqAI TTAA 3 cut(s) 237, 345, 427
SatI GCNGC 1 cut(s) 361
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 55
SetI ASST 7 cut(s) 46, 94, 166, 243, 263, 337, 419
SfaNI GCATC 1 cut(s) 117
SfcI CTRYAG 1 cut(s) 174
SmiMI CAYNNNNRTG 2 cut(s) 310, 337
Sse9I AATT 1 cut(s) 143
SseBI AGGCCT 1 cut(s) 100
SsiI CCGC 1 cut(s) 325
SspMI CTAG 2 cut(s) 116, 242
StuI AGGCCT 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 1 cut(s) 419
TasI AATT 1 cut(s) 143
TfiI GAWTC 2 cut(s) 286, 383
Tru1I TTAA 3 cut(s) 237, 345, 427
Tru9I TTAA 3 cut(s) 237, 345, 427
TseI GCWGC 1 cut(s) 360
TspDTI ATGAA 2 cut(s) 187, 378
VspI ATTAAT 1 cut(s) 345
XmnI GAANNNNTTC 1 cut(s) 296
XspI CTAG 2 cut(s) 116, 242
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.