Rroxscaffold_7G00217340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000686
Physical Location & Seq
Forward (+)
67800028 .. 67807630
7603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00217340.1

Sequence Viewer

Length: 591 bp
ATGAATGGCATTTGGAAACACTACCAGCTCCGCTTGTTTCCCGCGTTTCTTCAATCCCTCGTAGTACCTCTTCTCGCCAATCCCGCAACGGATCAAATCCCCCAACAACCACAATCGTCGCCGGAAAATCAACCCCCGAAATATCCACCGTGTTCGGCCCGAACACATTCACCACCGGGTGGTCCCGATCCGACCCCTCCGGCAAAAACGCCTTCCACATCCAGTCCGTCCGCTCTACGTTCACCAGCGGCACACTCTTCAGTCTCGTCTCCGATTCCGTTCGCTCCTCTCCGCCGAAAAACGGCTGAATCGCCAAGATTCCGACCACTTTCAGATCCCGAAACTCGTGCCCGCTCGCTCGATCGCCACGTGGTGCGCTATGTTCCCGCCGGAGCTGTCCCCGGCCAGAAAACACTGCGCGAGATTCGCGCCCTCGAACAAGCTGCTGTCGTCGATGAACTTGAGGACGTCGAAACCGTCGTCGTACTGGCACGGATACCGATGCTCCGGCGCGAGGCGGTAGTTGACGGAGACGACGACGGCGGGGATCTCGCGAGCGAGGCGTTGACAGAAGTCGTCGTAGGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.17

Weight (kDa)

6.43

Isoelectric Point (pI)

76.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 471
AccB7I CCANNNNNTGG 1 cut(s) 179
AccBSI CCGCTC 2 cut(s) 233, 354
AccII CGCG 5 cut(s) 44, 420, 429, 513, 554
AclWI GGATC 4 cut(s) 99, 182, 329, 555
AcoI YGGCCR 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 243
AcvI CACGTG 1 cut(s) 370
AcyI GRCGYC 1 cut(s) 468
AdeI CACNNNGTG 2 cut(s) 179, 373
AfaI GTAC 2 cut(s) 66, 486
AfiI CCNNNNNNNGG 3 cut(s) 179, 301, 514
AgsI TTSAA 1 cut(s) 53
AluBI AGCT 3 cut(s) 28, 395, 443
AluI AGCT 3 cut(s) 28, 395, 443
Alw26I GTCTC 3 cut(s) 268, 273, 525
AlwI GGATC 4 cut(s) 99, 182, 329, 555
AoxI GGCC 2 cut(s) 156, 403
ApeKI GCWGC 1 cut(s) 443
ArsI GACNNNNNNTTYG 2 cut(s) 465, 497
Asp700I GAANNNNTTC 1 cut(s) 166
AspLEI GCGC 4 cut(s) 378, 420, 431, 513
AspS9I GGNCC 2 cut(s) 157, 182
AsuC2I CCSGG 2 cut(s) 177, 402
AsuHPI GGTGA 2 cut(s) 162, 234
AvaII GGWCC 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 352
BarI GAAGNNNNNNTAC 2 cut(s) 54, 86
BauI CACGAG 1 cut(s) 345
BbrPI CACGTG 1 cut(s) 370
BbvI GCAGC 1 cut(s) 430
BceAI ACGGC 2 cut(s) 318, 556
BcgI CGANNNNNNTGC 4 cut(s) 329, 363, 425, 459
BciVI GTATCC 1 cut(s) 489
BcnI CCSGG 2 cut(s) 177, 402
BcoDI GTCTC 3 cut(s) 268, 273, 525
BfuI GTATCC 1 cut(s) 489
BisI GCNGC 2 cut(s) 249, 444
BlsI GCNGC 2 cut(s) 250, 445
Bme1390I CCNGG 2 cut(s) 177, 402
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 2 cut(s) 157, 182
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 2 cut(s) 177, 402
BmsI GCATC 1 cut(s) 492
BoxI GACNNNNGTC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 482
BpuMI CCSGG 2 cut(s) 177, 402
BsaAI YACGTR 1 cut(s) 370
BsaHI GRCGYC 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 400
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 301, 514
Bse1I ACTGG 2 cut(s) 222, 492
BseDI CCNNGG 1 cut(s) 400
BseGI GGATG 1 cut(s) 218
BseLI CCNNNNNNNGG 3 cut(s) 179, 301, 514
BseNI ACTGG 2 cut(s) 222, 492
BseRI GAGGAG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 352
BseXI GCAGC 1 cut(s) 430
Bsh1236I CGCG 5 cut(s) 44, 420, 429, 513, 554
Bsh1285I CGRYCG 1 cut(s) 364
BshFI GGCC 2 cut(s) 158, 405
BsiEI CGRYCG 1 cut(s) 364
BsiSI CCGG 6 cut(s) 122, 176, 200, 390, 402, 508
BslFI GGGAC 2 cut(s) 168, 383
BslI CCNNNNNNNGG 3 cut(s) 179, 301, 514
BsmAI GTCTC 3 cut(s) 268, 273, 525
BsmBI CGTCTC 2 cut(s) 273, 525
BsmFI GGGAC 2 cut(s) 168, 383
BsnI GGCC 2 cut(s) 158, 405
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 5 cut(s) 91, 187, 334, 361, 547
Bsp68I TCGCGA 1 cut(s) 554
BspANI GGCC 2 cut(s) 158, 405
BspFNI CGCG 5 cut(s) 44, 420, 429, 513, 554
BspLI GGNNCC 1 cut(s) 184
BspPI GGATC 4 cut(s) 99, 182, 329, 555
BsrBI CCGCTC 2 cut(s) 233, 354
BsrI ACTGG 2 cut(s) 222, 492
BssECI CCNNGG 1 cut(s) 400
BssMI GATC 5 cut(s) 91, 187, 334, 361, 547
BssNI GRCGYC 1 cut(s) 468
BssSI CACGAG 1 cut(s) 345
Bst2BI CACGAG 1 cut(s) 345
Bst4CI ACNGT 2 cut(s) 150, 478
Bst6I CTCTTC 2 cut(s) 75, 262
BstACI GRCGYC 1 cut(s) 468
BstBAI YACGTR 1 cut(s) 370
BstC8I GCNNGC 3 cut(s) 352, 356, 556
BstF5I GGATG 1 cut(s) 218
BstFNI CGCG 5 cut(s) 44, 420, 429, 513, 554
BstHHI GCGC 4 cut(s) 378, 420, 431, 513
BstKTI GATC 5 cut(s) 94, 190, 337, 364, 550
BstMAI GTCTC 3 cut(s) 268, 273, 525
BstMBI GATC 5 cut(s) 91, 187, 334, 361, 547
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 3 cut(s) 83, 426, 560
BstPAI GACNNNNGTC 1 cut(s) 572
BstSCI CCNGG 2 cut(s) 175, 400
BstSLI GKGCMC 1 cut(s) 352
BstUI CGCG 5 cut(s) 44, 420, 429, 513, 554
BstV1I GCAGC 1 cut(s) 430
BstX2I RGATCY 2 cut(s) 334, 547
BstYI RGATCY 2 cut(s) 334, 547
BsuI GTATCC 1 cut(s) 489
BsuRI GGCC 2 cut(s) 158, 405
BtsCI GGATG 1 cut(s) 218
BtsI GCAGTG 1 cut(s) 413
BtsIMutI CAGTG 1 cut(s) 413
BtuMI TCGCGA 1 cut(s) 554
Cac8I GCNNGC 3 cut(s) 352, 356, 556
CfoI GCGC 4 cut(s) 378, 420, 431, 513
Cfr13I GGNCC 2 cut(s) 157, 182
Csp6I GTAC 2 cut(s) 65, 485
CviJI RGCY 6 cut(s) 28, 158, 305, 395, 405, 443
CviKI_1 RGCY 6 cut(s) 28, 158, 305, 395, 405, 443
CviQI GTAC 2 cut(s) 65, 485
DpnI GATC 5 cut(s) 93, 189, 336, 363, 549
DpnII GATC 5 cut(s) 91, 187, 334, 361, 547
DraIII CACNNNGTG 2 cut(s) 179, 373
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 2 cut(s) 75, 262
EarI CTCTTC 2 cut(s) 75, 262
EciI GGCGGA 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 243
Eco72I CACGTG 1 cut(s) 370
Esp3I CGTCTC 2 cut(s) 273, 525
FaiI YATR 1 cut(s) 381
FaqI GGGAC 2 cut(s) 168, 383
FauI CCCGC 5 cut(s) 49, 91, 359, 394, 536
Fnu4HI GCNGC 2 cut(s) 249, 444
FokI GGATG 1 cut(s) 205
Fsp4HI GCNGC 2 cut(s) 249, 444
GlaI GCGC 4 cut(s) 377, 419, 430, 512
GluI GCNGC 2 cut(s) 249, 444
HaeIII GGCC 2 cut(s) 158, 405
HapII CCGG 6 cut(s) 122, 176, 200, 390, 402, 508
HhaI GCGC 4 cut(s) 378, 420, 431, 513
Hin1I GRCGYC 1 cut(s) 468
Hin6I GCGC 4 cut(s) 376, 418, 429, 511
HinP1I GCGC 4 cut(s) 376, 418, 429, 511
HincII GTYRAC 2 cut(s) 526, 567
HindII GTYRAC 2 cut(s) 526, 567
HinfI GANTC 4 cut(s) 274, 308, 318, 424
HpaII CCGG 6 cut(s) 122, 176, 200, 390, 402, 508
HphI GGTGA 2 cut(s) 162, 234
Hpy166II GTNNAC 3 cut(s) 242, 526, 567
Hpy188I TCNGA 4 cut(s) 192, 273, 323, 334
Hpy188III TCNNGA 3 cut(s) 185, 338, 553
Hpy8I GTNNAC 3 cut(s) 242, 526, 567
Hpy99I CGWCG 8 cut(s) 121, 455, 473, 482, 485, 539, 542, 581
HpyAV CCTTC 1 cut(s) 222
HpyCH4III ACNGT 2 cut(s) 150, 478
HpyCH4IV ACGT 3 cut(s) 238, 369, 468
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 426, 560
HpySE526I ACGT 3 cut(s) 238, 369, 468
Hsp92I GRCGYC 1 cut(s) 468
HspAI GCGC 4 cut(s) 376, 418, 429, 511
Kzo9I GATC 5 cut(s) 91, 187, 334, 361, 547
LmnI GCTCC 4 cut(s) 33, 289, 392, 510
Lsp1109I GCAGC 1 cut(s) 430
LweI GCATC 1 cut(s) 492
MaeII ACGT 3 cut(s) 238, 369, 468
MalI GATC 5 cut(s) 93, 189, 336, 363, 549
MbiI CCGCTC 2 cut(s) 233, 354
MboI GATC 5 cut(s) 91, 187, 334, 361, 547
MboII GAAGA 3 cut(s) 41, 62, 249
MflI RGATCY 2 cut(s) 334, 547
MhlI GDGCHC 1 cut(s) 352
MmeI TCCRAC 2 cut(s) 215, 346
MnlI CCTC 8 cut(s) 68, 78, 207, 297, 443, 457, 508, 553
MroXI GAANNNNTTC 1 cut(s) 166
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 6 cut(s) 122, 176, 200, 390, 402, 508
MspR9I CCNGG 2 cut(s) 177, 402
MvnI CGCG 5 cut(s) 44, 420, 429, 513, 554
MwoI GCNNNNNNNGC 3 cut(s) 83, 426, 560
NciI CCSGG 2 cut(s) 177, 402
NdeII GATC 5 cut(s) 91, 187, 334, 361, 547
NlaIV GGNNCC 1 cut(s) 184
NruI TCGCGA 1 cut(s) 554
PcsI WCGNNNNNNNCGW 4 cut(s) 366, 474, 477, 534
PdmI GAANNNNTTC 1 cut(s) 166
PfeI GAWTC 4 cut(s) 274, 308, 318, 424
PflMI CCANNNNNTGG 1 cut(s) 179
PkrI GCNGC 2 cut(s) 250, 445
Ple19I CGATCG 1 cut(s) 364
PmaCI CACGTG 1 cut(s) 370
PmlI CACGTG 1 cut(s) 370
Ppu21I YACGTR 1 cut(s) 370
PshAI GACNNNNGTC 1 cut(s) 572
PspCI CACGTG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 2 cut(s) 157, 182
PsuI RGATCY 2 cut(s) 334, 547
PvuI CGATCG 1 cut(s) 364
RruI TCGCGA 1 cut(s) 554
RsaI GTAC 2 cut(s) 66, 486
RsaNI GTAC 2 cut(s) 65, 485
SatI GCNGC 2 cut(s) 249, 444
Sau3AI GATC 5 cut(s) 91, 187, 334, 361, 547
Sau96I GGNCC 2 cut(s) 157, 182
ScrFI CCNGG 2 cut(s) 177, 402
SduI GDGCHC 1 cut(s) 352
SetI ASST 7 cut(s) 30, 70, 241, 372, 397, 445, 471
SfaNI GCATC 1 cut(s) 492
SinI GGWCC 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
StyD4I CCNGG 2 cut(s) 175, 400
TaaI ACNGT 2 cut(s) 150, 478
TaiI ACGT 3 cut(s) 241, 372, 471
TaqI TCGA 4 cut(s) 360, 435, 453, 471
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 4 cut(s) 274, 308, 318, 424
TscAI CASTG 1 cut(s) 420
TseI GCWGC 1 cut(s) 443
TspDTI ATGAA 2 cut(s) 17, 471
TspGWI ACGGA 5 cut(s) 104, 216, 267, 508, 543
TspRI CASTG 1 cut(s) 420
Van91I CCANNNNNTGG 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 166
ZraI GACGTC 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.