RchiOBHm_Chr6g0249761

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000686
Physical Location & Seq
Reverse (-)
5628329 .. 5630740
2412 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22391

Sequence Viewer

Length: 279 bp
ATGCTGAAAGGGGGAGAGGTTTCTCAATATGTTATTGGAGGGGCGGATTTGATGTTTCCTGGTATCAGCATACCTGCTGAAGGTCTACCACCATTTATAGCTGCGGAAGCATGGGCTGTTAAAGTTCCAGGAAATCCAGCTCCCATTGCTGTGGGAACTACTGGTATGATCTTCACTGAAGCATTAAAAGCTAGGTTGCGTGGAAAAGCCTTAAAAATTGCTCACTATTATGGTGACTTACTTTGGCAAGTATCTGTGGGAATTGACATAGAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

92

Amino Acids

9.68

Weight (kDa)

5.66

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUA_elF2D PF26292 6 - 79 4.7e-20 elF2D, PUA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71350
fragaria_vesca FvH4_2g00430 FvH4_2g00430 FvH4_2g00430 FvH4_2g00430
malus_domestica MD10G1002600.v1.1
prunus_persica Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1 Prupe.8G004200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249251 RchiOBHm_Chr6g0249261 RchiOBHm_Chr6g0249701 RchiOBHm_Chr6g0249761 RchiOBHm_Chr6g0249851 RchiOBHm_Chr6g0249861 RchiOBHm_Chr6g0249871 RchiOBHm_Chr6g0249891 RchiOBHm_Chr6g0249901 RchiOBHm_Chr6g0249911 RchiOBHm_Chr6g0249981 RchiOBHm_Chr6g0249991 RchiOBHm_Chr6g0250001 RchiOBHm_Chr6g0250151 RchiOBHm_Chr6g0250171 RchiOBHm_Chr6g0250191 RchiOBHm_Chr6g0250211 RchiOBHm_Chr6g0250221 RchiOBHm_Chr6g0250321 RchiOBHm_Chr6g0250391
rosa_laevigata RLG00000015543 RLG00000015548
rosa_multiflora Rmu_sc0000411.1_g000004 Rmu_sc0000411.1_g000009 Rmu_sc0000704.1_g000007 Rmu_sc0000704.1_g000011 Rmu_sc0001209.1_g000038 Rmu_sc0001209.1_g000042 Rmu_sc0001209.1_g000048 Rmu_sc0003293.1_g000005 Rmu_sc0004691.1_g000005 Rmu_sc0004691.1_g000007 Rmu_sc0004691.1_g000009 Rmu_sc0006032.1_g000001 Rmu_sc0006032.1_g000004 Rmu_sc0006032.1_g000005 Rmu_sc0008209.1_g000003 Rmu_sc0008209.1_g000010 Rmu_sc0009002.1_g000001 Rmu_sc0009002.1_g000005 Rmu_sc0009002.1_g000009
rosa_roxburghii Rroxscaffold_3G00218110 Rroxscaffold_7G00217270 Rroxscaffold_7G00217290 Rroxscaffold_7G00217300 Rroxscaffold_7G00217340
rosa_rugosa Rorug05G0494700 Rorug05G0495000 Rorug05G0496000 Rorug05G0498100 Rorug05G0498200
rosa_samantha Rh6AG000200 Rh6AG000300 Rh6AG004700 Rh6AG004800 Rh6AG005200 Rh6AG005300 Rh6AG005600 Rh6BG005500 Rh6BG005600 Rh6CG003700 Rh6DG003600
rosa_wichuraiana Rw6G000560 Rw6G000600 Rw6G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 82
AccI GTMKAC 1 cut(s) 85
AciI CCGC 2 cut(s) 44, 104
AcuI CTGAAG 2 cut(s) 99, 198
AfiI CCNNNNNNNGG 1 cut(s) 80
AjnI CCWGG 2 cut(s) 58, 127
AluBI AGCT 3 cut(s) 101, 140, 191
AluI AGCT 3 cut(s) 101, 140, 191
ApeKI GCWGC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 245
BbvI GCAGC 1 cut(s) 88
BciT130I CCWGG 2 cut(s) 60, 129
BfaI CTAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 82
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 2 cut(s) 60, 129
BmrFI CCNGG 2 cut(s) 60, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 2 cut(s) 60, 129
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMI GCAATG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 80
Bsp143I GATC 1 cut(s) 168
BspACI CCGC 2 cut(s) 44, 104
BspMI ACCTGC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 1 cut(s) 166
BssMI GATC 1 cut(s) 168
Bst2UI CCWGG 2 cut(s) 60, 129
BstENI CCTNNNNNAGG 1 cut(s) 78
BstKTI GATC 1 cut(s) 171
BstMBI GATC 1 cut(s) 168
BstMWI GCNNNNNNNGC 3 cut(s) 107, 146, 188
BstNI CCWGG 2 cut(s) 60, 129
BstSCI CCNGG 2 cut(s) 58, 127
BstV1I GCAGC 1 cut(s) 88
BstXI CCANNNNNNTGG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 174
BveI ACCTGC 1 cut(s) 82
CviAII CATG 1 cut(s) 111
CviJI RGCY 5 cut(s) 101, 116, 140, 191, 209
CviKI_1 RGCY 5 cut(s) 101, 116, 140, 191, 209
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
EciI GGCGGA 1 cut(s) 59
Eco57I CTGAAG 2 cut(s) 99, 198
EcoNI CCTNNNNNAGG 1 cut(s) 78
EcoRII CCWGG 2 cut(s) 58, 127
FaeI CATG 1 cut(s) 114
FaiI YATR 8 cut(s) 30, 71, 98, 112, 167, 231, 269, 277
FatI CATG 1 cut(s) 110
FblI GTMKAC 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 192
GluI GCNGC 1 cut(s) 102
Hin1II CATG 1 cut(s) 114
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 146, 188
Hsp92II CATG 1 cut(s) 114
Kzo9I GATC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 7 cut(s) 45, 72, 87, 114, 141, 147, 150
Lsp1109I GCAGC 1 cut(s) 88
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 233
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 1 cut(s) 163
MluCI AATT 2 cut(s) 216, 261
MnlI CCTC 2 cut(s) 10, 32
MseI TTAA 3 cut(s) 120, 185, 212
MslI CAYNNNNRTG 2 cut(s) 149, 228
MspR9I CCNGG 2 cut(s) 60, 129
MvaI CCWGG 2 cut(s) 60, 129
MwoI GCNNNNNNNGC 3 cut(s) 107, 146, 188
NdeII GATC 1 cut(s) 168
NlaIII CATG 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 1 cut(s) 103
Psp6I CCWGG 2 cut(s) 58, 127
PspGI CCWGG 2 cut(s) 58, 127
RseI CAYNNNNRTG 2 cut(s) 149, 228
SaqAI TTAA 3 cut(s) 120, 185, 212
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 1 cut(s) 168
ScrFI CCNGG 2 cut(s) 60, 129
SetI ASST 7 cut(s) 21, 76, 85, 103, 142, 193, 197
SmiMI CAYNNNNRTG 2 cut(s) 149, 228
Sse9I AATT 2 cut(s) 216, 261
SsiI CCGC 2 cut(s) 44, 104
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 58, 127
TasI AATT 2 cut(s) 216, 261
Tru1I TTAA 3 cut(s) 120, 185, 212
Tru9I TTAA 3 cut(s) 120, 185, 212
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 233
TspRI CASTG 1 cut(s) 181
XagI CCTNNNNNAGG 1 cut(s) 78
XmiI GTMKAC 1 cut(s) 85
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.