AT1G47210

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
17300691 .. 17302914
2224 bp
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UTR
Exon/CDS
Intron
AT1G47210.2

Sequence Viewer

Length: 579 bp
ATGACAGAGCAAGAGATCTGCGTGAGGGTTACAAGAGCGGCGGCGAAACGAAAAGCTTCGACGGCGATGGGTATTGACGGAGATCGGGTCAACAAGAAGAGAGTTGTTCTCGGTGAGCTTCTAAACGTCTCCAATGTCAATCTCTTGGCTAATCTCAATCAGAAGAAAGAAACCCAGAAGCCAAAAAGGAATCTTAAACCTCCTCCGGCGAAACAGATTAAGTCAGCTCCGGTGGCTATTATTGACCTAGAATCAAAATCTGACATTGATTCTCGATCTGATGATCCTCAAATGTGTGGACCTTATGTTGCTGATATCTATGAGTATCTTCGTCAACTTGAGGTGAAGCCAAAGCAGAGACCTTTACCAGATTACATAGAGAAAGTTCAGAAAGATGTAACACCAAGTATGAGAGGTGTTTTGGTTGATTGGTTAGTGGAAGTTGCTGAAGAGTATAAACTTGGATCTGAAACACTTTATCTCACTGTCTCACATATTGATAGATTCTTGTCTTTAAAGACTGTTAACAAGCAAAAGCTACAGCTTGTTGGAGTTTCTGCTATGCTTATTGCTTCGTAA

Protein Analysis

192

Amino Acids

21.56

Weight (kDa)

9.33

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 105 - 233 1.2e-47 Cyclin, N-terminal domain
Cyclin_C PF02984 236 - 358 7.1e-36 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 38
AciI CCGC 2 cut(s) 38, 41
AclWI GGATC 2 cut(s) 278, 472
AcuI CTGAAG 1 cut(s) 468
AluBI AGCT 5 cut(s) 56, 118, 227, 538, 544
AluI AGCT 5 cut(s) 56, 118, 227, 538, 544
Alw26I GTCTC 3 cut(s) 133, 352, 493
AlwI GGATC 2 cut(s) 278, 472
Asp700I GAANNNNTTC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 125, 355
AvaII GGWCC 1 cut(s) 299
BccI CCATC 1 cut(s) 61
BceAI ACGGC 1 cut(s) 78
BcoDI GTCTC 3 cut(s) 133, 352, 493
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 539
BglII AGATCT 1 cut(s) 15
BisI GCNGC 2 cut(s) 39, 42
BlsI GCNGC 2 cut(s) 40, 43
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BplI GAGNNNNNCTC 2 cut(s) 93, 125
BpuEI CTTGAG 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 352
BsaWI WCCGGW 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
BseRI GAGGAG 1 cut(s) 192
BsiSI CCGG 2 cut(s) 206, 230
BsmAI GTCTC 3 cut(s) 133, 352, 493
BsmBI CGTCTC 1 cut(s) 133
Bso31I GGTCTC 1 cut(s) 352
Bsp143I GATC 5 cut(s) 15, 82, 275, 283, 464
BspACI CCGC 2 cut(s) 38, 41
BspPI GGATC 2 cut(s) 278, 472
BspTNI GGTCTC 1 cut(s) 352
BsrBI CCGCTC 1 cut(s) 38
BssMI GATC 5 cut(s) 15, 82, 275, 283, 464
Bst4CI ACNGT 2 cut(s) 487, 523
Bst6I CTCTTC 2 cut(s) 92, 444
BstKTI GATC 5 cut(s) 18, 85, 278, 286, 467
BstMAI GTCTC 3 cut(s) 133, 352, 493
BstMBI GATC 5 cut(s) 15, 82, 275, 283, 464
BstMWI GCNNNNNNNGC 2 cut(s) 62, 233
BstSFI CTRYAG 1 cut(s) 539
BstX2I RGATCY 2 cut(s) 15, 464
BstYI RGATCY 2 cut(s) 15, 464
BtgZI GCGATG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 483
Cfr13I GGNCC 1 cut(s) 299
CviJI RGCY 9 cut(s) 56, 118, 149, 181, 227, 236, 349, 538, 544
CviKI_1 RGCY 9 cut(s) 56, 118, 149, 181, 227, 236, 349, 538, 544
DpnI GATC 5 cut(s) 17, 84, 277, 285, 466
DpnII GATC 5 cut(s) 15, 82, 275, 283, 464
DraI TTTAAA 1 cut(s) 516
Eam1104I CTCTTC 2 cut(s) 92, 444
EarI CTCTTC 2 cut(s) 92, 444
Eco31I GGTCTC 1 cut(s) 352
Eco32I GATATC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 468
EcoRV GATATC 1 cut(s) 316
Esp3I CGTCTC 1 cut(s) 133
FaiI YATR 7 cut(s) 306, 321, 377, 410, 456, 495, 563
Fnu4HI GCNGC 2 cut(s) 39, 42
Fsp4HI GCNGC 2 cut(s) 39, 42
FspBI CTAG 1 cut(s) 248
GluI GCNGC 2 cut(s) 39, 42
HapII CCGG 2 cut(s) 206, 230
HincII GTYRAC 3 cut(s) 91, 335, 526
HindII GTYRAC 3 cut(s) 91, 335, 526
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 4 cut(s) 190, 251, 269, 504
HpaI GTTAAC 1 cut(s) 526
HpaII CCGG 2 cut(s) 206, 230
HphI GGTGA 2 cut(s) 125, 355
Hpy166II GTNNAC 4 cut(s) 91, 299, 335, 526
Hpy188I TCNGA 5 cut(s) 162, 262, 280, 390, 469
Hpy188III TCNNGA 1 cut(s) 273
Hpy8I GTNNAC 4 cut(s) 91, 299, 335, 526
Hpy99I CGWCG 1 cut(s) 64
HpyCH4III ACNGT 2 cut(s) 487, 523
HpyCH4IV ACGT 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 233
HpySE526I ACGT 1 cut(s) 126
KspAI GTTAAC 1 cut(s) 526
Kzo9I GATC 5 cut(s) 15, 82, 275, 283, 464
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 4 cut(s) 188, 219, 243, 381
MaeI CTAG 1 cut(s) 248
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 28, 397
MalI GATC 5 cut(s) 17, 84, 277, 285, 466
MbiI CCGCTC 1 cut(s) 38
MboI GATC 5 cut(s) 15, 82, 275, 283, 464
MboII GAAGA 4 cut(s) 109, 175, 320, 461
MflI RGATCY 2 cut(s) 15, 464
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 6 cut(s) 18, 210, 213, 297, 334, 407
MroXI GAANNNNTTC 1 cut(s) 55
MseI TTAA 4 cut(s) 195, 219, 515, 525
MspI CCGG 2 cut(s) 206, 230
MwoI GCNNNNNNNGC 2 cut(s) 62, 233
NdeII GATC 5 cut(s) 15, 82, 275, 283, 464
PdmI GAANNNNTTC 1 cut(s) 55
PfeI GAWTC 4 cut(s) 190, 251, 269, 504
PkrI GCNGC 2 cut(s) 40, 43
PspPI GGNCC 1 cut(s) 299
PsuI RGATCY 2 cut(s) 15, 464
SaqAI TTAA 4 cut(s) 195, 219, 515, 525
SatI GCNGC 2 cut(s) 39, 42
Sau3AI GATC 5 cut(s) 15, 82, 275, 283, 464
Sau96I GGNCC 1 cut(s) 299
SfcI CTRYAG 1 cut(s) 539
SinI GGWCC 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
SsiI CCGC 2 cut(s) 38, 41
SspMI CTAG 1 cut(s) 248
TaaI ACNGT 2 cut(s) 487, 523
TaiI ACGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 59, 274
TauI GCSGC 2 cut(s) 41, 44
TfiI GAWTC 4 cut(s) 190, 251, 269, 504
Tru1I TTAA 4 cut(s) 195, 219, 515, 525
Tru9I TTAA 4 cut(s) 195, 219, 515, 525
TscAI CASTG 1 cut(s) 490
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 55
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.