MD12G1105600.v1.1

cell division

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000541
Physical Location & Seq
Forward (+)
16722446 .. 16724747
2302 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1105600.v1.1.491

Sequence Viewer

Length: 282 bp
ATGGCGGACAAGGAGAACTGCTTGCGCGTCATGAGGTCGATGAAGAGGAGGCCCGAGGCTGCAGTGACCCCGGAGCAGCCGTCCACCAAAAAACGTGTGGTGTTAGGAGAGCTCCTGAATGCCGTTGTTCTGACGAATAAAATGTCCGGGGCGGAGAAGCAAATCCAGAAACCCGGCGCCAAAGGCAAGGCGAAGAAAGCAGTGCCCCTGACCAAAACGATACAGCAGCCGGAGGCGGCCAACGACGTTGATGCAGTACTCATCTTTTCAGAAGAAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

94

Amino Acids

10.16

Weight (kDa)

9.72

Isoelectric Point (pI)

59.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AccII CGCG 1 cut(s) 27
AciI CCGC 3 cut(s) 5, 152, 236
AcoI YGGCCR 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 1 cut(s) 258
AflIII ACRYGT 1 cut(s) 94
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw21I GWGCWC 1 cut(s) 114
Ama87I CYCGRG 1 cut(s) 53
AoxI GGCC 2 cut(s) 50, 237
ApeKI GCWGC 3 cut(s) 59, 76, 226
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AspLEI GCGC 2 cut(s) 27, 179
AspS9I GGNCC 1 cut(s) 51
AsuC2I CCSGG 3 cut(s) 71, 148, 174
AvaI CYCGRG 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 207
BanI GGYRCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 3 cut(s) 46, 88, 238
BceAI ACGGC 2 cut(s) 64, 107
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BcnI CCSGG 3 cut(s) 71, 148, 174
BfmI CTRYAG 1 cut(s) 60
BfoI RGCGCY 1 cut(s) 180
BisI GCNGC 4 cut(s) 60, 77, 227, 237
BlsI GCNGC 4 cut(s) 61, 78, 228, 238
BmcAI AGTACT 1 cut(s) 258
Bme1390I CCNGG 3 cut(s) 71, 148, 174
BmeT110I CYCGRG 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 3 cut(s) 71, 148, 174
BmsI GCATC 1 cut(s) 241
BpuMI CCSGG 3 cut(s) 71, 148, 174
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 3 cut(s) 54, 69, 147
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
BseDI CCNNGG 3 cut(s) 54, 69, 147
BseRI GAGGAG 1 cut(s) 61
BseSI GKGCMC 1 cut(s) 207
BseXI GCAGC 3 cut(s) 46, 88, 238
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 2 cut(s) 52, 239
BshNI GGYRCC 1 cut(s) 176
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 4 cut(s) 71, 147, 174, 230
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 2 cut(s) 52, 239
BsoBI CYCGRG 1 cut(s) 53
Bsp1286I GDGCHC 2 cut(s) 114, 207
BspACI CCGC 3 cut(s) 5, 152, 236
BspANI GGCC 2 cut(s) 52, 239
BspFNI CGCG 1 cut(s) 27
BspHI TCATGA 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 178
BspMAI CTGCAG 1 cut(s) 64
BspT107I GGYRCC 1 cut(s) 176
BssECI CCNNGG 3 cut(s) 54, 69, 147
BssNI GRCGYC 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 23
BstFNI CGCG 1 cut(s) 27
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 2 cut(s) 27, 179
BstMWI GCNNNNNNNGC 2 cut(s) 183, 197
BstSCI CCNGG 3 cut(s) 69, 146, 172
BstSFI CTRYAG 1 cut(s) 60
BstSLI GKGCMC 1 cut(s) 207
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 3 cut(s) 46, 88, 238
BsuRI GGCC 2 cut(s) 52, 239
BtsI GCAGTG 2 cut(s) 69, 207
BtsIMutI CAGTG 2 cut(s) 69, 207
Cac8I GCNNGC 1 cut(s) 23
CciI TCATGA 1 cut(s) 30
CfoI GCGC 2 cut(s) 27, 179
Cfr13I GGNCC 1 cut(s) 51
CseI GACGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 257
CviAII CATG 1 cut(s) 31
CviJI RGCY 6 cut(s) 52, 59, 79, 112, 229, 239
CviKI_1 RGCY 6 cut(s) 52, 59, 79, 112, 229, 239
CviQI GTAC 1 cut(s) 257
DinI GGCGCC 1 cut(s) 178
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 2 cut(s) 20, 167
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 114
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
FaeI CATG 1 cut(s) 34
FaiI YATR 1 cut(s) 32
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 4 cut(s) 60, 77, 227, 237
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 4 cut(s) 60, 77, 227, 237
GlaI GCGC 2 cut(s) 26, 178
GluI GCNGC 4 cut(s) 60, 77, 227, 237
HaeII RGCGCY 1 cut(s) 180
HaeIII GGCC 2 cut(s) 52, 239
HapII CCGG 4 cut(s) 71, 147, 174, 230
HgaI GACGC 1 cut(s) 16
HhaI GCGC 2 cut(s) 27, 179
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 2 cut(s) 25, 177
HinP1I GCGC 2 cut(s) 25, 177
HpaII CCGG 4 cut(s) 71, 147, 174, 230
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 3 cut(s) 132, 271, 281
Hpy188III TCNNGA 3 cut(s) 31, 115, 166
Hpy8I GTNNAC 1 cut(s) 84
Hpy99I CGWCG 1 cut(s) 248
HpyCH4IV ACGT 2 cut(s) 94, 246
HpyCH4V TGCA 2 cut(s) 62, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 197
HpySE526I ACGT 2 cut(s) 94, 246
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 2 cut(s) 25, 177
KasI GGCGCC 1 cut(s) 176
LmnI GCTCC 2 cut(s) 73, 117
LpnPI CCDG 7 cut(s) 84, 128, 160, 179, 187, 221, 243
Lsp1109I GCAGC 3 cut(s) 46, 88, 238
LweI GCATC 1 cut(s) 241
MaeII ACGT 2 cut(s) 94, 246
MaeIII GTNAC 1 cut(s) 64
MboII GAAGA 2 cut(s) 55, 205
MhlI GDGCHC 2 cut(s) 114, 207
Mly113I GGCGCC 1 cut(s) 177
MnlI CCTC 5 cut(s) 27, 39, 42, 49, 226
MspI CCGG 4 cut(s) 71, 147, 174, 230
MspR9I CCNGG 3 cut(s) 71, 148, 174
Mva1269I GAATGC 1 cut(s) 124
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 183, 197
NarI GGCGCC 1 cut(s) 177
NciI CCSGG 3 cut(s) 71, 148, 174
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 64
PagI TCATGA 1 cut(s) 30
PctI GAATGC 1 cut(s) 124
PkrI GCNGC 4 cut(s) 61, 78, 228, 238
PluTI GGCGCC 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 51
PstI CTGCAG 1 cut(s) 64
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
SacI GAGCTC 1 cut(s) 114
SatI GCNGC 4 cut(s) 60, 77, 227, 237
Sau96I GGNCC 1 cut(s) 51
ScaI AGTACT 1 cut(s) 258
ScrFI CCNGG 3 cut(s) 71, 148, 174
SduI GDGCHC 2 cut(s) 114, 207
SetI ASST 4 cut(s) 38, 97, 114, 249
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 1 cut(s) 60
SfoI GGCGCC 1 cut(s) 178
SsiI CCGC 3 cut(s) 5, 152, 236
SspDI GGCGCC 1 cut(s) 176
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 3 cut(s) 69, 146, 172
TaiI ACGT 2 cut(s) 97, 249
TaqI TCGA 1 cut(s) 38
TatI WGTACW 1 cut(s) 256
TauI GCSGC 1 cut(s) 239
TscAI CASTG 2 cut(s) 69, 207
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 3 cut(s) 59, 76, 226
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 56
TspRI CASTG 2 cut(s) 69, 207
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
ZrmI AGTACT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.