Prupe.1G428000_v2.0.a1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000541
Physical Location & Seq
Forward (+)
36779693 .. 36782683
2991 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G428000.1

Sequence Viewer

Length: 1092 bp
ATGGCTTCTACCACCGTGGCCGAGCAACTGAACTGCACTCGCATCACTACTCGTGCTGCGGCGAAGCGGAGGGCGATGGCCGCCTTGGTTGAGGAGCATCAGCTGGCTACCAAGAAGCGCGCGGTGCTTGGAGATGTTACGAACTTGGTCAACGTCGTCGTTTCGGCCAACCACAAATCTTATGGTGAGTTGCAGAAACCGAATTGTGCAATCAAGAAGGAGGAGAAGAAAGCCGTAGCAACACGTGACATTGAGGATCCGCAACTGTGTGGACCTTATGCTTCGGACATTTATGCCTATCTTCGTAGAATGGAGGTGGAACCAAAGAGAAGGCCGTTGCCTGATTACATGGAGAAGGTTCAGAAAGATGCTAATGCTAATATGAGAGCGGTCCTTGTGGATTGGCTTGTGGAGGTTGCAGAGGAATATAAGCTCCTTCCAGACACGCTTCATCTCTCCGTTTCTTATATCGATAAGTATCTATCGATCAATGTGGTCAATAAGCAGAAGCTTCAGCTATTGGGAATTGCTTCAATGTTCATTGCATCGAAATATGAAGAGATTACTCCTCCAAATGTGGATGAGCTCTGTGACATAACAGAAAATACGTATACAAAAGAAGAGGTGATCAAGATGGAAGCCGACATTCTCAAGTCCCTGAAATTTGAAATGGGCAATCCTACTACTCGGACATTCTTAAGAAAATTCACTGATATTGCTCAAGAGAATTACAAAACTCCCAATTTGCGGTTAGAGTTCTTGGTTTGCTACCTTGCTGAGCTGAGTTTATTGGATTACAAACTTGTGAAGTTCCTGCCTTCTTTGGTAGCTGCATCAGTTGTTTTTCTGGCACGATTTATGACTAGAACAAAAATACATCCTTGGTGTCCAGCCCTGCAACAGTATACTGGATATAAAGCAGCTGATTTGAAAGAATGTGTTCTTGCCATACATGACATGTGCTTGGGTAGAAGAGCACGAAATTTGAATGTTATTCAAGAGAAATACAAACAACTTAAGTTCAAATGTGTGGCACACACTCATTGCCCTCAAGATATACCAGCTTCTTTATTTGAGGATCTGAAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

364

Amino Acids

41.46

Weight (kDa)

8.73

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 389
AccI GTMKAC 2 cut(s) 611, 905
AccII CGCG 2 cut(s) 120, 122
AciI CCGC 7 cut(s) 59, 67, 81, 122, 260, 389, 748
AclWI GGATC 3 cut(s) 251, 264, 1086
AcoI YGGCCR 3 cut(s) 18, 78, 165
AcsI RAATTY 3 cut(s) 662, 704, 982
AcuI CTGAAG 1 cut(s) 497
AcvI CACGTG 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 747
AflII CTTAAG 2 cut(s) 697, 1016
AflIII ACRYGT 2 cut(s) 242, 957
AgsI TTSAA 6 cut(s) 534, 668, 931, 988, 998, 1024
AluBI AGCT 9 cut(s) 103, 433, 511, 517, 586, 781, 830, 923, 1064
AluI AGCT 9 cut(s) 103, 433, 511, 517, 586, 781, 830, 923, 1064
Alw21I GWGCWC 2 cut(s) 588, 979
AlwI GGATC 3 cut(s) 251, 264, 1086
AoxI GGCC 4 cut(s) 18, 78, 165, 332
ApeKI GCWGC 3 cut(s) 56, 830, 920
ApoI RAATTY 3 cut(s) 662, 704, 982
Asp700I GAANNNNTTC 2 cut(s) 529, 939
AspLEI GCGC 2 cut(s) 120, 122
AspS9I GGNCC 2 cut(s) 272, 391
AsuHPI GGTGA 2 cut(s) 197, 637
AvaII GGWCC 2 cut(s) 272, 391
BamHI GGATCC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 588
BauI CACGAG 1 cut(s) 51
BbrPI CACGTG 1 cut(s) 245
Bbv12I GWGCWC 2 cut(s) 588, 979
BbvI GCAGC 3 cut(s) 43, 817, 932
BccI CCATC 2 cut(s) 70, 628
BceAI ACGGC 2 cut(s) 218, 319
BclI TGATCA 1 cut(s) 627
BfaI CTAG 1 cut(s) 864
BfrI CTTAAG 2 cut(s) 697, 1016
BisI GCNGC 5 cut(s) 57, 60, 81, 831, 921
BlpI GCTNAGC 1 cut(s) 777
BlsI GCNGC 5 cut(s) 58, 61, 82, 832, 922
Bme18I GGWCC 2 cut(s) 272, 391
BmgT120I GGNCC 2 cut(s) 272, 391
BmiI GGNNCC 2 cut(s) 258, 321
BmsI GCATC 5 cut(s) 51, 106, 358, 554, 842
Bpu1102I GCTNAGC 1 cut(s) 777
BpuEI CTTGAG 3 cut(s) 635, 705, 1035
Bsa29I ATCGAT 2 cut(s) 471, 485
BsaAI YACGTR 2 cut(s) 245, 609
BsaBI GATNNNNATC 1 cut(s) 477
BsaJI CCNNGG 3 cut(s) 15, 84, 881
Bsc4I CCNNNNNNNGG 1 cut(s) 747
Bse1I ACTGG 1 cut(s) 913
Bse3DI GCAATG 2 cut(s) 540, 1042
Bse8I GATNNNNATC 1 cut(s) 477
BseCI ATCGAT 2 cut(s) 471, 485
BseDI CCNNGG 3 cut(s) 15, 84, 881
BseGI GGATG 2 cut(s) 586, 877
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 1 cut(s) 747
BseMI GCAATG 2 cut(s) 540, 1042
BseMII CTCAG 2 cut(s) 768, 773
BseNI ACTGG 1 cut(s) 913
BsePI GCGCGC 1 cut(s) 118
BseRI GAGGAG 3 cut(s) 107, 236, 558
BseXI GCAGC 3 cut(s) 43, 817, 932
BsgI GTGCAG 1 cut(s) 19
Bsh1236I CGCG 2 cut(s) 120, 122
BshFI GGCC 4 cut(s) 20, 80, 167, 334
BshVI ATCGAT 2 cut(s) 471, 485
BsiHKAI GWGCWC 2 cut(s) 588, 979
BslFI GGGAC 1 cut(s) 640
BslI CCNNNNNNNGG 1 cut(s) 747
BsmFI GGGAC 1 cut(s) 640
BsnI GGCC 4 cut(s) 20, 80, 167, 334
Bsp1286I GDGCHC 2 cut(s) 588, 979
Bsp143I GATC 4 cut(s) 256, 486, 627, 1078
Bsp1720I GCTNAGC 1 cut(s) 777
BspACI CCGC 7 cut(s) 59, 67, 81, 122, 260, 389, 748
BspANI GGCC 4 cut(s) 20, 80, 167, 334
BspCNI CTCAG 2 cut(s) 769, 774
BspDI ATCGAT 2 cut(s) 471, 485
BspFNI CGCG 2 cut(s) 120, 122
BspLI GGNNCC 2 cut(s) 258, 321
BspPI GGATC 3 cut(s) 251, 264, 1086
BspQI GCTCTTC 1 cut(s) 967
BspTI CTTAAG 2 cut(s) 697, 1016
BsrBI CCGCTC 1 cut(s) 389
BsrDI GCAATG 2 cut(s) 540, 1042
BsrI ACTGG 1 cut(s) 913
BssECI CCNNGG 3 cut(s) 15, 84, 881
BssHII GCGCGC 1 cut(s) 118
BssMI GATC 4 cut(s) 256, 486, 627, 1078
BssNAI GTATAC 2 cut(s) 612, 906
BssSI CACGAG 1 cut(s) 51
BssT1I CCWWGG 2 cut(s) 84, 881
Bst1107I GTATAC 2 cut(s) 612, 906
Bst2BI CACGAG 1 cut(s) 51
Bst4CI ACNGT 3 cut(s) 16, 267, 903
Bst6I CTCTTC 3 cut(s) 552, 615, 967
BstAFI CTTAAG 2 cut(s) 697, 1016
BstBAI YACGTR 2 cut(s) 245, 609
BstC8I GCNNGC 2 cut(s) 105, 120
BstDEI CTNAG 2 cut(s) 777, 782
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 586, 877
BstFNI CGCG 2 cut(s) 120, 122
BstHHI GCGC 2 cut(s) 120, 122
BstKTI GATC 4 cut(s) 259, 489, 630, 1081
BstMBI GATC 4 cut(s) 256, 486, 627, 1078
BstMWI GCNNNNNNNGC 2 cut(s) 80, 124
BstNSI RCATGY 1 cut(s) 961
BstSNI TACGTA 1 cut(s) 609
BstUI CGCG 2 cut(s) 120, 122
BstV1I GCAGC 3 cut(s) 43, 817, 932
BstX2I RGATCY 2 cut(s) 256, 1078
BstYI RGATCY 2 cut(s) 256, 1078
BstZ17I GTATAC 2 cut(s) 612, 906
Bsu15I ATCGAT 2 cut(s) 471, 485
BsuRI GGCC 4 cut(s) 20, 80, 167, 334
BsuTUI ATCGAT 2 cut(s) 471, 485
BtgI CCRYGG 1 cut(s) 15
BtgZI GCGATG 1 cut(s) 89
BtsCI GGATG 2 cut(s) 586, 877
BtsIMutI CAGTG 1 cut(s) 708
Cac8I GCNNGC 2 cut(s) 105, 120
CfoI GCGC 2 cut(s) 120, 122
Cfr13I GGNCC 2 cut(s) 272, 391
ClaI ATCGAT 2 cut(s) 471, 485
CviAII CATG 4 cut(s) 349, 953, 958, 1089
DdeI CTNAG 2 cut(s) 777, 782
DpnI GATC 4 cut(s) 258, 488, 629, 1080
DpnII GATC 4 cut(s) 256, 486, 627, 1078
EaeI YGGCCR 3 cut(s) 18, 78, 165
Eam1104I CTCTTC 3 cut(s) 552, 615, 967
EarI CTCTTC 3 cut(s) 552, 615, 967
Ecl136II GAGCTC 1 cut(s) 586
Eco105I TACGTA 1 cut(s) 609
Eco130I CCWWGG 2 cut(s) 84, 881
Eco24I GRGCYC 1 cut(s) 588
Eco47I GGWCC 2 cut(s) 272, 391
Eco53kI GAGCTC 1 cut(s) 586
Eco57I CTGAAG 1 cut(s) 497
Eco72I CACGTG 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 586
EcoT14I CCWWGG 2 cut(s) 84, 881
EcoT38I GRGCYC 1 cut(s) 588
ErhI CCWWGG 2 cut(s) 84, 881
FaeI CATG 4 cut(s) 352, 956, 961, 1092
FaqI GGGAC 1 cut(s) 640
FatI CATG 4 cut(s) 348, 952, 957, 1088
FbaI TGATCA 1 cut(s) 627
FblI GTMKAC 2 cut(s) 611, 905
Fnu4HI GCNGC 5 cut(s) 57, 60, 81, 831, 921
FokI GGATG 2 cut(s) 593, 864
FriOI GRGCYC 1 cut(s) 588
Fsp4HI GCNGC 5 cut(s) 57, 60, 81, 831, 921
FspBI CTAG 1 cut(s) 864
GlaI GCGC 2 cut(s) 119, 121
GluI GCNGC 5 cut(s) 57, 60, 81, 831, 921
HaeIII GGCC 4 cut(s) 20, 80, 167, 334
HhaI GCGC 2 cut(s) 120, 122
Hin1II CATG 4 cut(s) 352, 956, 961, 1092
Hin6I GCGC 2 cut(s) 118, 120
HinP1I GCGC 2 cut(s) 118, 120
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 509
HphI GGTGA 2 cut(s) 197, 637
Hpy166II GTNNAC 4 cut(s) 151, 272, 612, 906
Hpy188I TCNGA 4 cut(s) 286, 363, 690, 1083
Hpy188III TCNNGA 6 cut(s) 214, 440, 631, 722, 998, 1052
Hpy8I GTNNAC 4 cut(s) 151, 272, 612, 906
Hpy99I CGWCG 2 cut(s) 158, 161
HpyAV CCTTC 5 cut(s) 211, 324, 349, 446, 828
HpyCH4III ACNGT 3 cut(s) 16, 267, 903
HpyCH4IV ACGT 3 cut(s) 153, 244, 608
HpyCH4V TGCA 7 cut(s) 36, 193, 209, 419, 545, 833, 898
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 124
HpyF3I CTNAG 2 cut(s) 777, 782
HpySE526I ACGT 3 cut(s) 153, 244, 608
Hsp92II CATG 4 cut(s) 352, 956, 961, 1092
HspAI GCGC 2 cut(s) 118, 120
Ksp22I TGATCA 1 cut(s) 627
Kzo9I GATC 4 cut(s) 256, 486, 627, 1078
LguI GCTCTTC 1 cut(s) 967
LmnI GCTCC 2 cut(s) 94, 438
Lsp1109I GCAGC 3 cut(s) 43, 817, 932
LweI GCATC 5 cut(s) 51, 106, 358, 554, 842
MaeI CTAG 1 cut(s) 864
MaeII ACGT 3 cut(s) 153, 244, 608
MaeIII GTNAC 3 cut(s) 136, 245, 590
MalI GATC 4 cut(s) 258, 488, 629, 1080
MbiI CCGCTC 1 cut(s) 389
MboI GATC 4 cut(s) 256, 486, 627, 1078
MboII GAAGA 5 cut(s) 238, 293, 569, 632, 984
MflI RGATCY 2 cut(s) 256, 1078
MhlI GDGCHC 2 cut(s) 588, 979
MluCI AATT 7 cut(s) 202, 525, 662, 704, 727, 742, 982
MroXI GAANNNNTTC 2 cut(s) 529, 939
MseI TTAA 2 cut(s) 698, 1017
MspA1I CMGCKG 2 cut(s) 103, 923
MspCI CTTAAG 2 cut(s) 697, 1016
MvnI CGCG 2 cut(s) 120, 122
MwoI GCNNNNNNNGC 2 cut(s) 80, 124
NdeII GATC 4 cut(s) 256, 486, 627, 1078
NlaIII CATG 4 cut(s) 352, 956, 961, 1092
NlaIV GGNNCC 2 cut(s) 258, 321
NmeAIII GCCGAG 1 cut(s) 46
NmuCI GTSAC 2 cut(s) 245, 590
NspI RCATGY 1 cut(s) 961
PauI GCGCGC 1 cut(s) 118
PciI ACATGT 1 cut(s) 957
PciSI GCTCTTC 1 cut(s) 967
PdmI GAANNNNTTC 2 cut(s) 529, 939
PkrI GCNGC 5 cut(s) 58, 61, 82, 832, 922
PmaCI CACGTG 1 cut(s) 245
PmlI CACGTG 1 cut(s) 245
Ppu21I YACGTR 2 cut(s) 245, 609
PscI ACATGT 1 cut(s) 957
Psp124BI GAGCTC 1 cut(s) 588
PspCI CACGTG 1 cut(s) 245
PspN4I GGNNCC 2 cut(s) 258, 321
PspPI GGNCC 2 cut(s) 272, 391
PsuI RGATCY 2 cut(s) 256, 1078
PteI GCGCGC 1 cut(s) 118
PvuII CAGCTG 2 cut(s) 103, 923
SacI GAGCTC 1 cut(s) 588
SapI GCTCTTC 1 cut(s) 967
SaqAI TTAA 2 cut(s) 698, 1017
SatI GCNGC 5 cut(s) 57, 60, 81, 831, 921
Sau3AI GATC 4 cut(s) 256, 486, 627, 1078
Sau96I GGNCC 2 cut(s) 272, 391
SduI GDGCHC 2 cut(s) 588, 979
SfaNI GCATC 5 cut(s) 51, 106, 358, 554, 842
SinI GGWCC 2 cut(s) 272, 391
SmlI CTYRAG 5 cut(s) 650, 697, 720, 1016, 1050
SmoI CTYRAG 5 cut(s) 650, 697, 720, 1016, 1050
SnaBI TACGTA 1 cut(s) 609
Sse9I AATT 7 cut(s) 202, 525, 662, 704, 727, 742, 982
SsiI CCGC 7 cut(s) 59, 67, 81, 122, 260, 389, 748
SspMI CTAG 1 cut(s) 864
SstI GAGCTC 1 cut(s) 588
StyI CCWWGG 2 cut(s) 84, 881
TaaI ACNGT 3 cut(s) 16, 267, 903
TaiI ACGT 3 cut(s) 156, 247, 611
TaqI TCGA 3 cut(s) 471, 485, 548
TasI AATT 7 cut(s) 202, 525, 662, 704, 727, 742, 982
TauI GCSGC 2 cut(s) 62, 83
Tru1I TTAA 2 cut(s) 698, 1017
Tru9I TTAA 2 cut(s) 698, 1017
TscAI CASTG 1 cut(s) 715
TseFI GTSAC 2 cut(s) 245, 590
TseI GCWGC 3 cut(s) 56, 830, 920
Tsp45I GTSAC 2 cut(s) 245, 590
TspDTI ATGAA 3 cut(s) 440, 529, 570
TspGWI ACGGA 1 cut(s) 448
TspRI CASTG 1 cut(s) 715
Vha464I CTTAAG 2 cut(s) 697, 1016
VpaK11BI GGWCC 2 cut(s) 272, 391
XapI RAATTY 3 cut(s) 662, 704, 982
XceI RCATGY 1 cut(s) 961
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XmiI GTMKAC 2 cut(s) 611, 905
XmnI GAANNNNTTC 2 cut(s) 529, 939
XspI CTAG 1 cut(s) 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.