Rh6AG069300

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
10025683 .. 10026893
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG069300.1

Sequence Viewer

Length: 309 bp
ATGGATATGGTGTTGGAAATGGAGAAAGATGTACTCAAATTCTTGAACTTTGAGATCTATACTCCCACAACAAGGAGTTTTCTCAGAATATTCGCAAGAGCTGCTCAAGAGAATTCCAAATCTTTGGGTCTGCAGTTTGAATTCTTGGGAGGTTATCTTGCGGAACTAAGTTTGCTTGACTACTGCTGTGTTCGATTCCTACCATCAGTTATTGCTGCATCGGCGGTTTTTCTTACAAGGTTCACAATCCAGCCTGAGGTTCATCCCTGGGTAAGAAACAATGTAGCGGACTTGGTATTTGTGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.73

Weight (kDa)

5.05

Isoelectric Point (pI)

23.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_C PF02984 22 - 90 1.5e-16 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 161, 224, 287
AcsI RAATTY 3 cut(s) 38, 112, 140
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 2 cut(s) 72, 256
AgsI TTSAA 2 cut(s) 46, 140
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
ApeKI GCWGC 2 cut(s) 101, 215
ApoI RAATTY 3 cut(s) 38, 112, 140
ArsI GACNNNNNNTTYG 1 cut(s) 281
AxyI CCTNAGG 1 cut(s) 255
BbvI GCAGC 2 cut(s) 88, 202
BccI CCATC 1 cut(s) 211
BciT130I CCWGG 1 cut(s) 268
BfmI CTRYAG 1 cut(s) 131
BglII AGATCT 1 cut(s) 54
BisI GCNGC 2 cut(s) 102, 216
BlsI GCNGC 2 cut(s) 103, 217
Bme1390I CCNGG 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 268
BmsI GCATC 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 266, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 256
Bse21I CCTNAGG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 2 cut(s) 266, 267
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 2 cut(s) 72, 256
BseMII CTCAG 2 cut(s) 97, 246
BseXI GCAGC 2 cut(s) 88, 202
BslI CCNNNNNNNGG 2 cut(s) 72, 256
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 3 cut(s) 161, 224, 287
BspCNI CTCAG 2 cut(s) 96, 247
BspMAI CTGCAG 1 cut(s) 135
BssECI CCNNGG 2 cut(s) 266, 267
BssMI GATC 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 268
BstAPI GCANNNNNTGC 1 cut(s) 101
BstDEI CTNAG 3 cut(s) 83, 167, 255
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 2 cut(s) 101, 221
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 266
BstSFI CTRYAG 1 cut(s) 131
BstV1I GCAGC 2 cut(s) 88, 202
BstX2I RGATCY 1 cut(s) 54
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 1 cut(s) 54
Bsu36I CCTNAGG 1 cut(s) 255
BtsCI GGATG 1 cut(s) 262
Csp6I GTAC 1 cut(s) 32
CviJI RGCY 2 cut(s) 101, 253
CviKI_1 RGCY 2 cut(s) 101, 253
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 3 cut(s) 83, 167, 255
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
Eco81I CCTNAGG 1 cut(s) 255
EcoRI GAATTC 2 cut(s) 112, 140
EcoRII CCWGG 1 cut(s) 266
FaiI YATR 2 cut(s) 8, 60
Fnu4HI GCNGC 2 cut(s) 102, 216
FokI GGATG 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 102, 216
GluI GCNGC 2 cut(s) 102, 216
HinfI GANTC 1 cut(s) 195
Hpy166II GTNNAC 2 cut(s) 243, 304
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 2 cut(s) 43, 107
Hpy8I GTNNAC 2 cut(s) 243, 304
HpyCH4V TGCA 2 cut(s) 133, 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 221
HpyF3I CTNAG 3 cut(s) 83, 167, 255
Kzo9I GATC 1 cut(s) 54
LpnPI CCDG 4 cut(s) 253, 263, 267, 280
Lsp1109I GCAGC 2 cut(s) 88, 202
LweI GCATC 1 cut(s) 227
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MflI RGATCY 1 cut(s) 54
MluCI AATT 3 cut(s) 38, 112, 140
MnlI CCTC 2 cut(s) 143, 250
MspR9I CCNGG 1 cut(s) 268
MvaI CCWGG 1 cut(s) 268
MwoI GCNNNNNNNGC 2 cut(s) 101, 221
NdeII GATC 1 cut(s) 54
PasI CCCWGGG 1 cut(s) 267
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 2 cut(s) 103, 217
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PstI CTGCAG 1 cut(s) 135
PsuI RGATCY 1 cut(s) 54
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SatI GCNGC 2 cut(s) 102, 216
Sau3AI GATC 1 cut(s) 54
ScrFI CCNGG 1 cut(s) 268
SetI ASST 4 cut(s) 103, 154, 242, 261
SfaNI GCATC 1 cut(s) 227
SfcI CTRYAG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
Sse9I AATT 3 cut(s) 38, 112, 140
SsiI CCGC 3 cut(s) 161, 224, 287
SspI AATATT 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 266
TaqI TCGA 1 cut(s) 193
TasI AATT 3 cut(s) 38, 112, 140
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 1 cut(s) 195
TseI GCWGC 2 cut(s) 101, 215
TspDTI ATGAA 1 cut(s) 251
XapI RAATTY 3 cut(s) 38, 112, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.