Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000541

Physical Location & Seq

Genomic Coordinates Forward (+)

2866124 .. 2868206

Gene Structure 2083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00159770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCGGAGAAAGAGAACCGCGTCCGCGTCACGGGCGCCATGAAACGGAAGGCCGAAGCCGCCGCCGCCGCCGACCAAAATTCCCCAAGAAGCGCAACTAAATCCCAGGCGGCGAAGAAGGCTCTGCACAATCCGATGACGGCGCCGGAGGATGAAACGACGCCGTCAGATTCCCAAATGTGCGAGCCTTATCCCCGTGACATATACGAGTATCTTCACAAGCTCGAGGTGGATCCAAATAGAAGACCTTTGCCTGATTACTTGGCGAAGGTTCAGAAGGATATTACTCCTAATATGAGAGGAGTATTGGTGGACTGGTTGGTGAAAGTTGCTGAGGAATACAAGCTCCTTTCCGACACTCTCTACCTCACCGTTTCGTATGTTGATAGGTTCCTTTCTTTCAATGCTCTCAATCAGAAAATGCTTCAGTTACTCGGTGTTTCTTCAATGCTCGTTGCCTCGAAGTATGAAGAGATCACACCTCCACATGTGGAAGAATTGTGTTACATAACAGAGAATACTAAGGAAGAGGTGTGCAAAATGGAGGCTGATATACTTAAGGCCTTGAAGTTTGAATTGGGAAATCCTACCATAAAGACAATCTTAAGGAGATTCAATAGAGTTGCTGAAGAGGGCAACAAAGATCCTGATCTGCATTTTGAATTTCTGGGCTACTACCTTGCAGAGCTAGGTTTGTTAGACTACAACTGTGTCAAATTTTTGCCTTCTTTGGTGGCTGCTTCTGTTGTATTTCTTACCAGATTTATCATCCAGCCAAGGATGCATCCATGGACTTCATCGCTGCAACAATATTCAGGATACAAACCATCTGAGTTGAGGGAATGTGTCCTTATCATACATGACTTGTATCTGGGTAGAAGAGGAGGTTCATTGCAAGCTATAAGAAAGAAGTACAAAAGACATGAGTTCAAATTCGTGGCAGTGATGCCTTCTCCTCCAGAGGTGCCAGCATACTATTTTGAAGATCTTATAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

332

Amino Acids

38.12

Weight (kDa)

6.68

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	67 - 193	7.7e-42	Cyclin, N-terminal domain
Cyclin_C	PF02984	196 - 318	7.2e-32	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca	FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica	MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica	Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis	pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis	RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata	RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora	Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii	Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa	Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha	Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana	Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	35, 142, 964
AccII	CGCG	2 cut(s)	21, 27
AciI	CCGC	8 cut(s)	5, 19, 25, 60, 63, 66, 69, 110
AclWI	GGATC	3 cut(s)	227, 240, 638
AcsI	RAATTY	4 cut(s)	79, 662, 716, 932
AcuI	CTGAAG	2 cut(s)	410, 648
AcyI	GRCGYC	3 cut(s)	36, 143, 161
AfaI	GTAC	1 cut(s)	914
AfiI	CCNNNNNNNGG	2 cut(s)	31, 45
AflII	CTTAAG	2 cut(s)	557, 604
AflIII	ACRYGT	1 cut(s)	487
AgsI	TTSAA	8 cut(s)	403, 447, 568, 575, 616, 662, 931, 983
AjnI	CCWGG	1 cut(s)	105
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	4 cut(s)	223, 346, 688, 899
AluI	AGCT	4 cut(s)	223, 346, 688, 899
AlwI	GGATC	3 cut(s)	227, 240, 638
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	2 cut(s)	51, 561
ApeKI	GCWGC	2 cut(s)	737, 802
ApoI	RAATTY	4 cut(s)	79, 662, 716, 932
AspLEI	GCGC	3 cut(s)	38, 95, 145
AsuHPI	GGTGA	2 cut(s)	334, 361
AvaI	CYCGRG	1 cut(s)	224
BamHI	GGATCC	1 cut(s)	232
BanI	GGYRCC	3 cut(s)	35, 142, 964
BbsI	GAAGAC	1 cut(s)	250
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	724, 789
BccI	CCATC	1 cut(s)	835
BceAI	ACGGC	2 cut(s)	148, 156
BciT130I	CCWGG	1 cut(s)	107
BciVI	GTATCC	1 cut(s)	812
BfaI	CTAG	1 cut(s)	689
BfoI	RGCGCY	2 cut(s)	39, 146
BfrI	CTTAAG	2 cut(s)	557, 604
BfuI	GTATCC	1 cut(s)	812
BglII	AGATCT	1 cut(s)	985
BisI	GCNGC	7 cut(s)	60, 63, 66, 69, 111, 738, 803
BlsI	GCNGC	7 cut(s)	61, 64, 67, 70, 112, 739, 804
Bme1390I	CCNGG	1 cut(s)	107
BmeT110I	CYCGRG	1 cut(s)	224
BmiI	GGNNCC	5 cut(s)	37, 144, 234, 392, 966
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	3 cut(s)	771, 793, 936
BpiI	GAAGAC	1 cut(s)	250
BpmI	CTGGAG	1 cut(s)	942
Bpu10I	CCTNAGC	1 cut(s)	333
BsaBI	GATNNNNATC	1 cut(s)	648
BsaHI	GRCGYC	3 cut(s)	36, 143, 161
BsaJI	CCNNGG	3 cut(s)	105, 776, 788
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 45
Bse1I	ACTGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	890
Bse8I	GATNNNNATC	1 cut(s)	648
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	3 cut(s)	105, 776, 788
BseGI	GGATG	4 cut(s)	157, 768, 784, 786
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	2 cut(s)	31, 45
BseMI	GCAATG	1 cut(s)	890
BseMII	CTCAG	2 cut(s)	324, 822
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	3 cut(s)	315, 897, 945
BseXI	GCAGC	2 cut(s)	724, 789
BsgI	GTGCAG	1 cut(s)	110
Bsh1236I	CGCG	2 cut(s)	21, 27
BshFI	GGCC	2 cut(s)	53, 563
BshNI	GGYRCC	3 cut(s)	35, 142, 964
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	31, 45
BsnI	GGCC	2 cut(s)	53, 563
BsoBI	CYCGRG	1 cut(s)	224
Bsp143I	GATC	5 cut(s)	232, 474, 643, 649, 985
Bsp19I	CCATGG	1 cut(s)	788
BspACI	CCGC	8 cut(s)	5, 19, 25, 60, 63, 66, 69, 110
BspANI	GGCC	2 cut(s)	53, 563
BspCNI	CTCAG	2 cut(s)	325, 823
BspFNI	CGCG	2 cut(s)	21, 27
BspLI	GGNNCC	5 cut(s)	37, 144, 234, 392, 966
BspPI	GGATC	3 cut(s)	227, 240, 638
BspT107I	GGYRCC	3 cut(s)	35, 142, 964
BspTI	CTTAAG	2 cut(s)	557, 604
BsrDI	GCAATG	1 cut(s)	890
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	3 cut(s)	105, 776, 788
BssMI	GATC	5 cut(s)	232, 474, 643, 649, 985
BssNI	GRCGYC	3 cut(s)	36, 143, 161
BssT1I	CCWWGG	2 cut(s)	776, 788
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	2 cut(s)	373, 710
Bst6I	CTCTTC	4 cut(s)	465, 522, 624, 874
BstACI	GRCGYC	3 cut(s)	36, 143, 161
BstAFI	CTTAAG	2 cut(s)	557, 604
BstC8I	GCNNGC	3 cut(s)	185, 897, 969
BstDEI	CTNAG	3 cut(s)	333, 522, 831
BstDSI	CCRYGG	1 cut(s)	788
BstF5I	GGATG	4 cut(s)	157, 768, 784, 786
BstFNI	CGCG	2 cut(s)	21, 27
BstH2I	RGCGCY	2 cut(s)	39, 146
BstHHI	GCGC	3 cut(s)	38, 95, 145
BstKTI	GATC	5 cut(s)	235, 477, 646, 652, 988
BstMBI	GATC	5 cut(s)	232, 474, 643, 649, 985
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 59, 65, 68, 119, 781
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	105
BstUI	CGCG	2 cut(s)	21, 27
BstV1I	GCAGC	2 cut(s)	724, 789
BstV2I	GAAGAC	1 cut(s)	250
BstX2I	RGATCY	3 cut(s)	232, 643, 985
BstYI	RGATCY	3 cut(s)	232, 643, 985
BsuI	GTATCC	1 cut(s)	812
BsuRI	GGCC	2 cut(s)	53, 563
BtgI	CCRYGG	1 cut(s)	788
BtgZI	GCGATG	1 cut(s)	783
BtsCI	GGATG	4 cut(s)	157, 768, 784, 786
BtsI	GCAGTG	1 cut(s)	948
BtsIMutI	CAGTG	1 cut(s)	948
Cac8I	GCNNGC	3 cut(s)	185, 897, 969
CfoI	GCGC	3 cut(s)	38, 95, 145
CseI	GACGC	3 cut(s)	10, 16, 169
Csp6I	GTAC	1 cut(s)	913
CviAII	CATG	5 cut(s)	40, 488, 789, 860, 923
CviQI	GTAC	1 cut(s)	913
DdeI	CTNAG	3 cut(s)	333, 522, 831
DinI	GGCGCC	2 cut(s)	37, 144
DpnI	GATC	5 cut(s)	234, 476, 645, 651, 987
DpnII	GATC	5 cut(s)	232, 474, 643, 649, 985
Eam1104I	CTCTTC	4 cut(s)	465, 522, 624, 874
EarI	CTCTTC	4 cut(s)	465, 522, 624, 874
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	776, 788
Eco147I	AGGCCT	1 cut(s)	563
Eco57I	CTGAAG	2 cut(s)	410, 648
Eco88I	CYCGRG	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	2 cut(s)	776, 788
EcoT22I	ATGCAT	1 cut(s)	786
EgeI	GGCGCC	2 cut(s)	37, 144
EheI	GGCGCC	2 cut(s)	37, 144
ErhI	CCWWGG	2 cut(s)	776, 788
FaeI	CATG	5 cut(s)	43, 491, 792, 863, 926
FalI	AAGNNNNNCTT	2 cut(s)	587, 619
FatI	CATG	5 cut(s)	39, 487, 788, 859, 922
Fnu4HI	GCNGC	7 cut(s)	60, 63, 66, 69, 111, 738, 803
FokI	GGATG	4 cut(s)	164, 755, 771, 793
Fsp4HI	GCNGC	7 cut(s)	60, 63, 66, 69, 111, 738, 803
FspBI	CTAG	1 cut(s)	689
GlaI	GCGC	3 cut(s)	37, 94, 144
GluI	GCNGC	7 cut(s)	60, 63, 66, 69, 111, 738, 803
GsuI	CTGGAG	1 cut(s)	942
HaeII	RGCGCY	2 cut(s)	39, 146
HaeIII	GGCC	2 cut(s)	53, 563
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	3 cut(s)	10, 16, 169
HhaI	GCGC	3 cut(s)	38, 95, 145
Hin1I	GRCGYC	3 cut(s)	36, 143, 161
Hin1II	CATG	5 cut(s)	43, 491, 792, 863, 926
Hin6I	GCGC	3 cut(s)	36, 93, 143
HinP1I	GCGC	3 cut(s)	36, 93, 143
HinfI	GANTC	2 cut(s)	170, 612
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	2 cut(s)	334, 361
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	6 cut(s)	135, 169, 276, 355, 417, 832
Hpy188III	TCNNGA	3 cut(s)	647, 816, 959
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	6 cut(s)	43, 112, 262, 271, 735, 960
HpyCH4III	ACNGT	2 cut(s)	373, 710
HpyCH4V	TGCA	7 cut(s)	127, 537, 655, 683, 784, 805, 895
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 59, 65, 68, 119, 781
HpyF3I	CTNAG	3 cut(s)	333, 522, 831
Hsp92I	GRCGYC	3 cut(s)	36, 143, 161
Hsp92II	CATG	5 cut(s)	43, 491, 792, 863, 926
HspAI	GCGC	3 cut(s)	36, 93, 143
KasI	GGCGCC	2 cut(s)	35, 142
Kzo9I	GATC	5 cut(s)	232, 474, 643, 649, 985
LmnI	GCTCC	1 cut(s)	351
Lsp1109I	GCAGC	2 cut(s)	724, 789
LweI	GCATC	3 cut(s)	771, 793, 936
MaeI	CTAG	1 cut(s)	689
MaeIII	GTNAC	4 cut(s)	28, 197, 429, 503
MalI	GATC	5 cut(s)	234, 476, 645, 651, 987
MboI	GATC	5 cut(s)	232, 474, 643, 649, 985
MflI	RGATCY	3 cut(s)	232, 643, 985
MluCI	AATT	6 cut(s)	79, 497, 575, 662, 716, 932
Mly113I	GGCGCC	2 cut(s)	36, 143
MmeI	TCCRAC	1 cut(s)	378
Mph1103I	ATGCAT	1 cut(s)	786
MseI	TTAA	2 cut(s)	558, 605
MspCI	CTTAAG	2 cut(s)	557, 604
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	2 cut(s)	21, 27
MwoI	GCNNNNNNNGC	6 cut(s)	33, 59, 65, 68, 119, 781
NarI	GGCGCC	2 cut(s)	36, 143
NcoI	CCATGG	1 cut(s)	788
NdeII	GATC	5 cut(s)	232, 474, 643, 649, 985
NlaIII	CATG	5 cut(s)	43, 491, 792, 863, 926
NlaIV	GGNNCC	5 cut(s)	37, 144, 234, 392, 966
NmuCI	GTSAC	2 cut(s)	28, 197
NsiI	ATGCAT	1 cut(s)	786
NspI	RCATGY	1 cut(s)	491
PaeR7I	CTCGAG	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	563
PciI	ACATGT	1 cut(s)	487
PfeI	GAWTC	2 cut(s)	170, 612
PflFI	GACNNNGTC	1 cut(s)	163
PkrI	GCNGC	7 cut(s)	61, 64, 67, 70, 112, 739, 804
PluTI	GGCGCC	2 cut(s)	39, 146
PscI	ACATGT	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	5 cut(s)	37, 144, 234, 392, 966
PspXI	VCTCGAGB	1 cut(s)	224
PsuI	RGATCY	3 cut(s)	232, 643, 985
PsyI	GACNNNGTC	1 cut(s)	163
RsaI	GTAC	1 cut(s)	914
RsaNI	GTAC	1 cut(s)	913
SaqAI	TTAA	2 cut(s)	558, 605
SatI	GCNGC	7 cut(s)	60, 63, 66, 69, 111, 738, 803
Sau3AI	GATC	5 cut(s)	232, 474, 643, 649, 985
ScrFI	CCNGG	1 cut(s)	107
SfaNI	GCATC	3 cut(s)	771, 793, 936
SfoI	GGCGCC	2 cut(s)	37, 144
Sfr274I	CTCGAG	1 cut(s)	224
SlaI	CTCGAG	1 cut(s)	224
SmlI	CTYRAG	3 cut(s)	224, 557, 604
SmoI	CTYRAG	3 cut(s)	224, 557, 604
Sse9I	AATT	6 cut(s)	79, 497, 575, 662, 716, 932
SseBI	AGGCCT	1 cut(s)	563
SsiI	CCGC	8 cut(s)	5, 19, 25, 60, 63, 66, 69, 110
SspDI	GGCGCC	2 cut(s)	35, 142
SspI	AATATT	1 cut(s)	812
SspMI	CTAG	1 cut(s)	689
StuI	AGGCCT	1 cut(s)	563
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	2 cut(s)	776, 788
TaaI	ACNGT	2 cut(s)	373, 710
TaqI	TCGA	2 cut(s)	225, 461
TasI	AATT	6 cut(s)	79, 497, 575, 662, 716, 932
TatI	WGTACW	1 cut(s)	912
TauI	GCSGC	5 cut(s)	62, 65, 68, 71, 113
TfiI	GAWTC	2 cut(s)	170, 612
Tru1I	TTAA	2 cut(s)	558, 605
Tru9I	TTAA	2 cut(s)	558, 605
TscAI	CASTG	1 cut(s)	948
TseFI	GTSAC	2 cut(s)	28, 197
TseI	GCWGC	2 cut(s)	737, 802
Tsp45I	GTSAC	2 cut(s)	28, 197
TspDTI	ATGAA	5 cut(s)	56, 168, 483, 786, 879
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	1 cut(s)	948
Tth111I	GACNNNGTC	1 cut(s)	163
Vha464I	CTTAAG	2 cut(s)	557, 604
XapI	RAATTY	4 cut(s)	79, 662, 716, 932
XceI	RCATGY	1 cut(s)	491
XhoI	CTCGAG	1 cut(s)	224
XspI	CTAG	1 cut(s)	689
Zsp2I	ATGCAT	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.