RchiOBHm_Chr3g0465621

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000541
Physical Location & Seq
Forward (+)
12355273 .. 12355675
403 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43176

Sequence Viewer

Length: 321 bp
ATGAGGGGAGGACTAAGAATTTACTACCTCATAGATCTAAGTTTAGTAGATTACAAACTTGTGAAGTTCTTGCCTTCTATTATAGCTGCATCGGCTGTATTTCTAGCGAGAGTTATTATTACTACGTCAAAAATGAATCCTTGGTGTCCAGCACTACAAGAATATACTGGTTATAAGGCAGTGGATTGGAGAGAATGTGTTCTTATCATTCACGACTTGTTTTTGGGTAGACGTGGTGGATCTTTGGTAGCTGTACGAGATAAATACAAACAGACTAAGGTTTTTCATGAAGATATCGTCATAACTAATCTCATAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

106

Amino Acids

12.13

Weight (kDa)

9.39

Isoelectric Point (pI)

30.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_C PF02984 8 - 95 5.4e-25 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AccI GTMKAC 1 cut(s) 229
AclWI GGATC 1 cut(s) 247
AcsI RAATTY 1 cut(s) 18
AfaI GTAC 1 cut(s) 255
AjiI CACGTC 1 cut(s) 233
AluBI AGCT 2 cut(s) 86, 251
AluI AGCT 2 cut(s) 86, 251
AlwI GGATC 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 18
Asp700I GAANNNNTTC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 73
BfaI CTAG 1 cut(s) 104
BglII AGATCT 1 cut(s) 34
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmgBI CACGTC 1 cut(s) 233
BmsI GCATC 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bse1I ACTGG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 34, 239
BspHI TCATGA 1 cut(s) 286
BspPI GGATC 1 cut(s) 247
BsrI ACTGG 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 2 cut(s) 34, 239
BssT1I CCWWGG 1 cut(s) 140
BstDEI CTNAG 3 cut(s) 14, 38, 276
BstKTI GATC 2 cut(s) 37, 242
BstMBI GATC 2 cut(s) 34, 239
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 73
BstX2I RGATCY 2 cut(s) 34, 239
BstYI RGATCY 2 cut(s) 34, 239
BtrI CACGTC 1 cut(s) 233
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 186
CciI TCATGA 1 cut(s) 286
Csp6I GTAC 1 cut(s) 254
CviAII CATG 1 cut(s) 287
CviJI RGCY 3 cut(s) 86, 95, 251
CviKI_1 RGCY 3 cut(s) 86, 95, 251
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 3 cut(s) 14, 38, 276
DpnI GATC 2 cut(s) 36, 241
DpnII GATC 2 cut(s) 34, 239
Eco130I CCWWGG 1 cut(s) 140
Eco32I GATATC 1 cut(s) 295
EcoRV GATATC 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 1 cut(s) 290
FaiI YATR 8 cut(s) 32, 83, 165, 174, 288, 302, 314, 319
FatI CATG 1 cut(s) 286
FblI GTMKAC 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 104
GluI GCNGC 1 cut(s) 87
Hin1II CATG 1 cut(s) 290
HinfI GANTC 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 230
Hpy188III TCNNGA 2 cut(s) 212, 287
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 84
HpyCH4IV ACGT 2 cut(s) 125, 232
HpyCH4V TGCA 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 3 cut(s) 14, 38, 276
HpySE526I ACGT 2 cut(s) 125, 232
Hsp92II CATG 1 cut(s) 290
Kzo9I GATC 2 cut(s) 34, 239
LpnPI CCDG 2 cut(s) 153, 162
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 98
MaeI CTAG 1 cut(s) 104
MaeII ACGT 2 cut(s) 125, 232
MalI GATC 2 cut(s) 36, 241
MboI GATC 2 cut(s) 34, 239
MboII GAAGA 1 cut(s) 302
MflI RGATCY 2 cut(s) 34, 239
MluCI AATT 1 cut(s) 18
MnlI CCTC 1 cut(s) 38
MroXI GAANNNNTTC 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 2 cut(s) 34, 239
NlaIII CATG 1 cut(s) 290
PagI TCATGA 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 136
PkrI GCNGC 1 cut(s) 88
PsiI TTATAA 1 cut(s) 174
PsuI RGATCY 2 cut(s) 34, 239
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 2 cut(s) 34, 239
SetI ASST 6 cut(s) 30, 88, 128, 235, 253, 282
SfaNI GCATC 1 cut(s) 98
Sse9I AATT 1 cut(s) 18
SspMI CTAG 1 cut(s) 104
StyI CCWWGG 1 cut(s) 140
TaiI ACGT 2 cut(s) 128, 235
TasI AATT 1 cut(s) 18
TfiI GAWTC 1 cut(s) 136
TscAI CASTG 1 cut(s) 186
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 3 cut(s) 149, 275, 303
TspRI CASTG 1 cut(s) 186
XapI RAATTY 1 cut(s) 18
XmiI GTMKAC 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.