Rroxscaffold_7G00210810

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000541
Physical Location & Seq
Reverse (-)
61248834 .. 61251665
2832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210810.1

Sequence Viewer

Length: 1140 bp
ATGTGCGACGAAGGAAACAGCGTCTACACCACGCGCTCGACGAAGAAGCGACCCTCAGCGGCGGAGGCTCTGAAAGCTCCGGCGTCCAAGAAGCAGCGATCCGTACTGGGAGAGATCACCAACTCGCCGGACGTGGCTTCGATTCCGAAATCGGCACCGAAGAAACCGAAAATTGAGTCGCCGAAGGAGAAGAAGAAGGAAGAGGAGGAGGGACTCAAGACGGAGATTGGTGTGAGCTCGATTGATCCGGTCAAATGTGCTTACTCGCCTTCTATGTATAAGCATCTTCATGAATTGGAGGTGGAGGTGAAGAATAGACCATTATGTGGTTACATGGAGAAGGTGCAGAATTGTATTTCAGAACACATGCGAGAAGTCCTGGTGGATTGGTTGGTGGAGGTTGCGGAGGAATACAAGTTTGTTTCAGACACCCTTTATCTTACTGTATCATATATCGACAGATACCTTTCTTCACACGTTATCAGCAAGAACAAGCTACAGCTTCTTGGTGTTGCGTGCATGTTTATTGCCTCGAAGTACGAAGAGATTTGTCCTCCACGCATTGAAGAGTTCTGCTATATAACAGATAATTCCTACATAATAGAAGAGGTGTTGGAAATGGAGAAAGATGTACTCAAATTCTTGGACTTTGAGATCTATACTCCCACAACAAAGAATTTTCTCAGGCAATTAGTGTCTGAAAATCCAGTAATGTTGCCTTTTGATTTGCAGAATCTTCGCAAGAGCTGCTCAAGAGAATTCCAAAGTAGGAGAGCAGTTTATATTTCTTCGGATCTGCAGTTTGAATTCTTGGGTGGTTATCTTGCGGAACTAAGTTTGCTTGACTACTGCTGTGTTCGATTCCTACCATCAGTTATTGCTGCATCGGCGGTTTTTCTTACAAGGTTCACAATCCAGCCTGAGGTTCATCCCTGGAGCTGGGACTTGCAATGCTATTCTGGTTATAAACCATCTGATTTACAAGACTGTGTCCTTGCCCTTCATGACTTGCAGCTGAATAGAAGAGGAAGCAATTTGCTAGCGGTTAGAGATAAATATATGCAAGCAAAGTTTAAGTGTGTAGCAACATTGTCTTCACACTCTGAGATTCCTGCACTTTATTTTGAGGCCATCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

379

Amino Acids

43.4

Weight (kDa)

5.92

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 92 - 219 2e-45 Cyclin, N-terminal domain
Cyclin_C PF02984 260 - 365 4.9e-29 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 966
AccB1I GGYRCC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 326
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 34
AciI CCGC 6 cut(s) 59, 62, 404, 827, 890, 1043
AclWI GGATC 3 cut(s) 93, 239, 801
AcsI RAATTY 4 cut(s) 638, 676, 758, 806
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 3 cut(s) 105, 539, 633
AfiI CCNNNNNNNGG 3 cut(s) 326, 922, 939
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 2 cut(s) 566, 806
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 2 cut(s) 378, 932
AluBI AGCT 7 cut(s) 77, 237, 496, 502, 747, 939, 1015
AluI AGCT 7 cut(s) 77, 237, 496, 502, 747, 939, 1015
Alw21I GWGCWC 1 cut(s) 239
AlwI GGATC 3 cut(s) 93, 239, 801
AoxI GGCC 1 cut(s) 1128
ApeKI GCWGC 4 cut(s) 94, 747, 881, 1012
ApoI RAATTY 4 cut(s) 638, 676, 758, 806
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AspLEI GCGC 1 cut(s) 36
AsuHPI GGTGA 2 cut(s) 109, 319
AsuNHI GCTAGC 1 cut(s) 1039
AxyI CCTNAGG 1 cut(s) 921
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 1086
Bbv12I GWGCWC 1 cut(s) 239
BbvCI CCTCAGC 1 cut(s) 55
BbvI GCAGC 4 cut(s) 106, 734, 868, 1024
BccI CCATC 3 cut(s) 877, 979, 1139
BcgI CGANNNNNNTGC 2 cut(s) 719, 753
BciT130I CCWGG 2 cut(s) 380, 934
BfaI CTAG 1 cut(s) 1040
BfmI CTRYAG 2 cut(s) 497, 797
BglII AGATCT 1 cut(s) 654
BisI GCNGC 5 cut(s) 60, 95, 748, 882, 1013
BlsI GCNGC 5 cut(s) 61, 96, 749, 883, 1014
Bme1390I CCNGG 2 cut(s) 380, 934
BmgBI CACGTC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 2 cut(s) 380, 934
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 2 cut(s) 292, 893
BmtI GCTAGC 1 cut(s) 1043
BmuI ACTGGG 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 1086
BpmI CTGGAG 1 cut(s) 955
Bpu10I CCTNAGC 1 cut(s) 55
BpuEI CTTGAG 2 cut(s) 200, 736
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 932
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 3 cut(s) 326, 922, 939
Bse1I ACTGG 2 cut(s) 111, 707
Bse21I CCTNAGG 1 cut(s) 921
Bse3DI GCAATG 1 cut(s) 956
BseBI CCWGG 2 cut(s) 380, 934
BseDI CCNNGG 1 cut(s) 932
BseGI GGATG 1 cut(s) 928
BseLI CCNNNNNNNGG 3 cut(s) 326, 922, 939
BseMI GCAATG 1 cut(s) 956
BseMII CTCAG 4 cut(s) 69, 697, 912, 1095
BseNI ACTGG 2 cut(s) 111, 707
BseRI GAGGAG 2 cut(s) 218, 221
BseXI GCAGC 4 cut(s) 106, 734, 868, 1024
BseYI CCCAGC 1 cut(s) 939
BsgI GTGCAG 2 cut(s) 365, 1098
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 1130
BshNI GGYRCC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 239
BsiSI CCGG 3 cut(s) 80, 128, 248
BslFI GGGAC 2 cut(s) 225, 956
BslI CCNNNNNNNGG 3 cut(s) 326, 922, 939
BsmFI GGGAC 2 cut(s) 225, 956
BsnI GGCC 1 cut(s) 1130
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 5 cut(s) 98, 114, 244, 654, 793
BspACI CCGC 6 cut(s) 59, 62, 404, 827, 890, 1043
BspANI GGCC 1 cut(s) 1130
BspCNI CTCAG 4 cut(s) 68, 696, 913, 1096
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 2 cut(s) 289, 1003
BspLI GGNNCC 1 cut(s) 156
BspMAI CTGCAG 1 cut(s) 801
BspOI GCTAGC 1 cut(s) 1043
BspPI GGATC 3 cut(s) 93, 239, 801
BspT107I GGYRCC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 956
BsrI ACTGG 2 cut(s) 111, 707
BssECI CCNNGG 1 cut(s) 932
BssMI GATC 5 cut(s) 98, 114, 244, 654, 793
BssNI GRCGYC 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 380, 934
Bst4CI ACNGT 2 cut(s) 445, 989
Bst6I CTCTTC 5 cut(s) 195, 537, 561, 600, 1018
BstACI GRCGYC 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 747
BstC8I GCNNGC 3 cut(s) 517, 1041, 1065
BstDEI CTNAG 5 cut(s) 55, 683, 833, 921, 1104
BstF5I GGATG 1 cut(s) 928
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 5 cut(s) 101, 117, 247, 657, 796
BstMBI GATC 5 cut(s) 98, 114, 244, 654, 793
BstMWI GCNNNNNNNGC 4 cut(s) 65, 74, 747, 887
BstNI CCWGG 2 cut(s) 380, 934
BstNSI RCATGY 2 cut(s) 370, 523
BstSCI CCNGG 2 cut(s) 378, 932
BstSFI CTRYAG 2 cut(s) 497, 797
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 4 cut(s) 106, 734, 868, 1024
BstV2I GAAGAC 1 cut(s) 1086
BstX2I RGATCY 2 cut(s) 654, 793
BstYI RGATCY 2 cut(s) 654, 793
Bsu36I CCTNAGG 1 cut(s) 921
BsuRI GGCC 1 cut(s) 1130
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 928
Cac8I GCNNGC 3 cut(s) 517, 1041, 1065
CciI TCATGA 2 cut(s) 289, 1003
CfoI GCGC 1 cut(s) 36
CseI GACGC 2 cut(s) 10, 72
Csp6I GTAC 3 cut(s) 104, 538, 632
CviAII CATG 5 cut(s) 290, 334, 367, 520, 1004
CviQI GTAC 3 cut(s) 104, 538, 632
DdeI CTNAG 5 cut(s) 55, 683, 833, 921, 1104
DpnI GATC 5 cut(s) 100, 116, 246, 656, 795
DpnII GATC 5 cut(s) 98, 114, 244, 654, 793
Eam1104I CTCTTC 5 cut(s) 195, 537, 561, 600, 1018
EarI CTCTTC 5 cut(s) 195, 537, 561, 600, 1018
EciI GGCGGA 1 cut(s) 77
Ecl136II GAGCTC 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 237
Eco81I CCTNAGG 1 cut(s) 921
EcoICRI GAGCTC 1 cut(s) 237
EcoRI GAATTC 2 cut(s) 758, 806
EcoRII CCWGG 2 cut(s) 378, 932
EcoT38I GRGCYC 1 cut(s) 239
FaeI CATG 5 cut(s) 293, 337, 370, 523, 1007
FaqI GGGAC 2 cut(s) 225, 956
FatI CATG 5 cut(s) 289, 333, 366, 519, 1003
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 5 cut(s) 60, 95, 748, 882, 1013
FokI GGATG 1 cut(s) 915
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 5 cut(s) 60, 95, 748, 882, 1013
FspBI CTAG 1 cut(s) 1040
GlaI GCGC 1 cut(s) 35
GluI GCNGC 5 cut(s) 60, 95, 748, 882, 1013
GsaI CCCAGC 1 cut(s) 943
GsuI CTGGAG 1 cut(s) 955
HaeIII GGCC 1 cut(s) 1130
HapII CCGG 3 cut(s) 80, 128, 248
HgaI GACGC 2 cut(s) 10, 72
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 5 cut(s) 293, 337, 370, 523, 1007
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 6 cut(s) 142, 176, 213, 733, 861, 1108
HpaII CCGG 3 cut(s) 80, 128, 248
HphI GGTGA 2 cut(s) 109, 319
Hpy166II GTNNAC 2 cut(s) 25, 909
Hpy188I TCNGA 8 cut(s) 72, 147, 361, 427, 700, 793, 976, 1105
Hpy188III TCNNGA 4 cut(s) 217, 290, 753, 1004
Hpy8I GTNNAC 2 cut(s) 25, 909
Hpy99I CGWCG 2 cut(s) 11, 43
HpyAV CCTTC 6 cut(s) 5, 178, 190, 279, 334, 1010
HpyCH4III ACNGT 2 cut(s) 445, 989
HpyCH4IV ACGT 2 cut(s) 132, 477
HpyCH4V TGCA 9 cut(s) 346, 519, 730, 799, 884, 949, 1012, 1063, 1115
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 74, 747, 887
HpyF3I CTNAG 5 cut(s) 55, 683, 833, 921, 1104
HpySE526I ACGT 2 cut(s) 132, 477
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 5 cut(s) 293, 337, 370, 523, 1007
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 5 cut(s) 98, 114, 244, 654, 793
LmnI GCTCC 2 cut(s) 82, 936
Lsp1109I GCAGC 4 cut(s) 106, 734, 868, 1024
LweI GCATC 2 cut(s) 292, 893
MaeI CTAG 1 cut(s) 1040
MaeII ACGT 2 cut(s) 132, 477
MaeIII GTNAC 1 cut(s) 329
MalI GATC 5 cut(s) 100, 116, 246, 656, 795
MboI GATC 5 cut(s) 98, 114, 244, 654, 793
MflI RGATCY 2 cut(s) 654, 793
MhlI GDGCHC 1 cut(s) 239
MlyI GAGTC 2 cut(s) 185, 207
MmeI TCCRAC 1 cut(s) 594
MseI TTAA 1 cut(s) 1074
MslI CAYNNNNRTG 1 cut(s) 288
MspA1I CMGCKG 2 cut(s) 59, 1015
MspI CCGG 3 cut(s) 80, 128, 248
MspR9I CCNGG 2 cut(s) 380, 934
MvaI CCWGG 2 cut(s) 380, 934
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 4 cut(s) 65, 74, 747, 887
NdeII GATC 5 cut(s) 98, 114, 244, 654, 793
NheI GCTAGC 1 cut(s) 1039
NlaIII CATG 5 cut(s) 293, 337, 370, 523, 1007
NlaIV GGNNCC 1 cut(s) 156
NspI RCATGY 2 cut(s) 370, 523
PagI TCATGA 2 cut(s) 289, 1003
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PfeI GAWTC 4 cut(s) 142, 733, 861, 1108
PflFI GACNNNGTC 1 cut(s) 989
PflMI CCANNNNNTGG 1 cut(s) 326
PkrI GCNGC 5 cut(s) 61, 96, 749, 883, 1014
PleI GAGTC 2 cut(s) 184, 207
PpsI GAGTC 2 cut(s) 184, 207
PsiI TTATAA 1 cut(s) 966
Psp124BI GAGCTC 1 cut(s) 239
Psp6I CCWGG 2 cut(s) 378, 932
PspFI CCCAGC 1 cut(s) 939
PspGI CCWGG 2 cut(s) 378, 932
PspN4I GGNNCC 1 cut(s) 156
PstI CTGCAG 1 cut(s) 801
PsuI RGATCY 2 cut(s) 654, 793
PsyI GACNNNGTC 1 cut(s) 989
PvuII CAGCTG 1 cut(s) 1015
RsaI GTAC 3 cut(s) 105, 539, 633
RsaNI GTAC 3 cut(s) 104, 538, 632
RseI CAYNNNNRTG 1 cut(s) 288
SacI GAGCTC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 1074
SatI GCNGC 5 cut(s) 60, 95, 748, 882, 1013
Sau3AI GATC 5 cut(s) 98, 114, 244, 654, 793
SchI GAGTC 2 cut(s) 185, 207
ScrFI CCNGG 2 cut(s) 380, 934
SduI GDGCHC 1 cut(s) 239
SfaNI GCATC 2 cut(s) 292, 893
SfcI CTRYAG 2 cut(s) 497, 797
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 2 cut(s) 215, 751
SmoI CTYRAG 2 cut(s) 215, 751
SsiI CCGC 6 cut(s) 59, 62, 404, 827, 890, 1043
SspMI CTAG 1 cut(s) 1040
SstI GAGCTC 1 cut(s) 239
StyD4I CCNGG 2 cut(s) 378, 932
TaaI ACNGT 2 cut(s) 445, 989
TaiI ACGT 2 cut(s) 135, 480
TaqI TCGA 6 cut(s) 38, 140, 239, 456, 533, 859
TatI WGTACW 1 cut(s) 631
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 4 cut(s) 142, 733, 861, 1108
Tru1I TTAA 1 cut(s) 1074
Tru9I TTAA 1 cut(s) 1074
TseI GCWGC 4 cut(s) 94, 747, 881, 1012
TspDTI ATGAA 4 cut(s) 278, 306, 917, 992
TspGWI ACGGA 2 cut(s) 91, 236
Tth111I GACNNNGTC 1 cut(s) 989
Van91I CCANNNNNTGG 1 cut(s) 326
XapI RAATTY 4 cut(s) 638, 676, 758, 806
XceI RCATGY 2 cut(s) 370, 523
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.