RLG00000014913

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
59417964 .. 59420285
2322 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014913

Sequence Viewer

Length: 1074 bp
ATGTGCGACGAAGGAAACAGCGTCTACACCACGCGCTCGACGAAGAAGCGAGCCTCGGCGGCGGAGGCTCTGAAAGCTCCGGCGTCCAAGAGGCAGCGATCCGTACTGGGAGAGATCACCAACTCGCCGGATCTCGTTTCGGTTCTGAAATCGGCACCGCAGAAACCGAAAATTGAGTCGCCGAAGGAGAAGAAGAAGGAAGAGGAGGAGGGACTCAAGACGGAGATTGGTGTGAGCTCGATTGATTCGATCAAATGTGCTTACTCGCCTTCTATGTATAAGCATCTTCATAAATTGGAGGTGGAGGTGAAGAACAGACCATTATGTGGTTACATGGAGAAGGTGCAGAATTGTATTTCAGAACACATGCGAGAAGTCCTGGTGGATTGGTTGGTGGAGGTTGCGGAGGAATACAAGTTTGTTTCAGACACCCTTTATCTTACCGTATCATATATTGACAGATACCTTTCTTCACACGTTATCAGCAAGAACAAGCTACAGCTTCTTGGTGTTGCGTGCATGTTTATTGCCTCGAAGTACGAAGAGATTTGTCCTCCACGTATTGAAGAGTTCTGCTATATAACAGATAATTCCTACATGATAGAAGAGGTGTTGGAAATGGAGAAAGATGTACTCAAATTCTTGAACTTTGAGATCTATACTCCCACAACAAAGAGTTTTCTCAGAATCTTCGCAAGAGCTGCTCAAGAGAATTCCAAATCTTTGGGTCTGCAGTTTGAATTCTTGGGTGGTTATCTTGCGGAACTAAGTTTGCTTGACTACTGCTGTGTTCGATTCCTACCATCACTTATTGCTGCATCGGCGGTTTTTCTTACAAGGTTCACAATCCAGCCTGAGGTTCATCCCTGGAGCTGGAACTTGCAATGCTATTCTGGTTATAAACCATCTGATTTACAAGATTGTGTCCTTGCCCTTCATGACTTGCAGCTGAATAAAAGAGGAAGCAATTTGCGAGCGGTTAGAGATAAATATATGCAAGCAAAGTTTAAGTGCGTAGCAACATTGTCTTCACACTCTGAGATTCCTGCACTTTATTTTGAGGCCATCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

358

Amino Acids

40.74

Weight (kDa)

6.68

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 92 - 219 1.8e-45 Cyclin, N-terminal domain
Cyclin_C PF02984 222 - 343 8.9e-34 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 900
AccB1I GGYRCC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 326
AccBSI CCGCTC 1 cut(s) 977
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 34
AciI CCGC 7 cut(s) 59, 62, 158, 404, 761, 824, 977
AclWI GGATC 2 cut(s) 93, 138
AcsI RAATTY 3 cut(s) 638, 712, 740
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 3 cut(s) 105, 539, 633
AfiI CCNNNNNNNGG 3 cut(s) 326, 856, 873
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 3 cut(s) 566, 646, 740
AjnI CCWGG 2 cut(s) 378, 866
AluBI AGCT 7 cut(s) 77, 237, 496, 502, 701, 873, 949
AluI AGCT 7 cut(s) 77, 237, 496, 502, 701, 873, 949
Alw21I GWGCWC 1 cut(s) 239
AlwI GGATC 2 cut(s) 93, 138
AoxI GGCC 1 cut(s) 1062
ApeKI GCWGC 4 cut(s) 94, 701, 815, 946
ApoI RAATTY 3 cut(s) 638, 712, 740
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AspLEI GCGC 1 cut(s) 36
AsuHPI GGTGA 2 cut(s) 109, 319
AxyI CCTNAGG 1 cut(s) 855
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 1020
Bbv12I GWGCWC 1 cut(s) 239
BbvI GCAGC 4 cut(s) 106, 688, 802, 958
BccI CCATC 3 cut(s) 811, 913, 1073
BciT130I CCWGG 2 cut(s) 380, 868
BfmI CTRYAG 2 cut(s) 497, 731
BglI GCCNNNNNGGC 1 cut(s) 59
BglII AGATCT 1 cut(s) 654
BisI GCNGC 5 cut(s) 60, 95, 702, 816, 947
BlsI GCNGC 5 cut(s) 61, 96, 703, 817, 948
Bme1390I CCNGG 2 cut(s) 380, 868
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 2 cut(s) 380, 868
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 2 cut(s) 292, 827
BmuI ACTGGG 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 1020
BpmI CTGGAG 1 cut(s) 889
BpuEI CTTGAG 2 cut(s) 200, 690
BsaAI YACGTR 1 cut(s) 560
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 54, 866
Bsc4I CCNNNNNNNGG 3 cut(s) 326, 856, 873
Bse1I ACTGG 1 cut(s) 111
Bse21I CCTNAGG 1 cut(s) 855
Bse3DI GCAATG 1 cut(s) 890
BseBI CCWGG 2 cut(s) 380, 868
BseDI CCNNGG 2 cut(s) 54, 866
BseGI GGATG 1 cut(s) 862
BseLI CCNNNNNNNGG 3 cut(s) 326, 856, 873
BseMI GCAATG 1 cut(s) 890
BseMII CTCAG 3 cut(s) 697, 846, 1029
BseNI ACTGG 1 cut(s) 111
BseRI GAGGAG 2 cut(s) 218, 221
BseXI GCAGC 4 cut(s) 106, 688, 802, 958
BsgI GTGCAG 2 cut(s) 365, 1032
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 1064
BshNI GGYRCC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 239
BsiSI CCGG 2 cut(s) 80, 128
BslFI GGGAC 1 cut(s) 225
BslI CCNNNNNNNGG 3 cut(s) 326, 856, 873
BsmFI GGGAC 1 cut(s) 225
BsnI GGCC 1 cut(s) 1064
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 5 cut(s) 98, 114, 130, 249, 654
BspACI CCGC 7 cut(s) 59, 62, 158, 404, 761, 824, 977
BspANI GGCC 1 cut(s) 1064
BspCNI CTCAG 3 cut(s) 696, 847, 1030
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 937
BspLI GGNNCC 1 cut(s) 156
BspMAI CTGCAG 1 cut(s) 735
BspPI GGATC 2 cut(s) 93, 138
BspT107I GGYRCC 1 cut(s) 154
BsrBI CCGCTC 1 cut(s) 977
BsrDI GCAATG 1 cut(s) 890
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 54, 866
BssMI GATC 5 cut(s) 98, 114, 130, 249, 654
BssNI GRCGYC 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 380, 868
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 4 cut(s) 195, 537, 561, 600
BstACI GRCGYC 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 701
BstBAI YACGTR 1 cut(s) 560
BstC8I GCNNGC 4 cut(s) 51, 517, 975, 999
BstDEI CTNAG 4 cut(s) 683, 767, 855, 1038
BstF5I GGATG 1 cut(s) 862
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 5 cut(s) 101, 117, 133, 252, 657
BstMBI GATC 5 cut(s) 98, 114, 130, 249, 654
BstMWI GCNNNNNNNGC 5 cut(s) 59, 65, 74, 701, 821
BstNI CCWGG 2 cut(s) 380, 868
BstNSI RCATGY 2 cut(s) 370, 523
BstSCI CCNGG 2 cut(s) 378, 866
BstSFI CTRYAG 2 cut(s) 497, 731
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 4 cut(s) 106, 688, 802, 958
BstV2I GAAGAC 1 cut(s) 1020
BstX2I RGATCY 2 cut(s) 130, 654
BstXI CCANNNNNNTGG 1 cut(s) 724
BstYI RGATCY 2 cut(s) 130, 654
Bsu36I CCTNAGG 1 cut(s) 855
BsuRI GGCC 1 cut(s) 1064
BtsCI GGATG 1 cut(s) 862
Cac8I GCNNGC 4 cut(s) 51, 517, 975, 999
CciI TCATGA 1 cut(s) 937
CfoI GCGC 1 cut(s) 36
CseI GACGC 2 cut(s) 10, 72
Csp6I GTAC 3 cut(s) 104, 538, 632
CviAII CATG 5 cut(s) 334, 367, 520, 598, 938
CviQI GTAC 3 cut(s) 104, 538, 632
DdeI CTNAG 4 cut(s) 683, 767, 855, 1038
DpnI GATC 5 cut(s) 100, 116, 132, 251, 656
DpnII GATC 5 cut(s) 98, 114, 130, 249, 654
Eam1104I CTCTTC 4 cut(s) 195, 537, 561, 600
EarI CTCTTC 4 cut(s) 195, 537, 561, 600
EciI GGCGGA 1 cut(s) 77
Ecl136II GAGCTC 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 237
Eco81I CCTNAGG 1 cut(s) 855
EcoICRI GAGCTC 1 cut(s) 237
EcoRI GAATTC 2 cut(s) 712, 740
EcoRII CCWGG 2 cut(s) 378, 866
EcoT38I GRGCYC 1 cut(s) 239
FaeI CATG 5 cut(s) 337, 370, 523, 601, 941
FaqI GGGAC 1 cut(s) 225
FatI CATG 5 cut(s) 333, 366, 519, 597, 937
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 5 cut(s) 60, 95, 702, 816, 947
FokI GGATG 1 cut(s) 849
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 5 cut(s) 60, 95, 702, 816, 947
GlaI GCGC 1 cut(s) 35
GluI GCNGC 5 cut(s) 60, 95, 702, 816, 947
GsuI CTGGAG 1 cut(s) 889
HaeIII GGCC 1 cut(s) 1064
HapII CCGG 2 cut(s) 80, 128
HgaI GACGC 2 cut(s) 10, 72
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 5 cut(s) 337, 370, 523, 601, 941
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 6 cut(s) 176, 213, 245, 687, 795, 1042
HpaII CCGG 2 cut(s) 80, 128
HphI GGTGA 2 cut(s) 109, 319
Hpy166II GTNNAC 2 cut(s) 25, 843
Hpy188I TCNGA 7 cut(s) 72, 147, 361, 427, 686, 910, 1039
Hpy188III TCNNGA 4 cut(s) 217, 643, 707, 938
Hpy8I GTNNAC 2 cut(s) 25, 843
Hpy99I CGWCG 2 cut(s) 11, 43
HpyAV CCTTC 6 cut(s) 5, 178, 190, 279, 334, 944
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 2 cut(s) 477, 559
HpyCH4V TGCA 8 cut(s) 346, 519, 733, 818, 883, 946, 997, 1049
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 65, 74, 701, 821
HpyF3I CTNAG 4 cut(s) 683, 767, 855, 1038
HpySE526I ACGT 2 cut(s) 477, 559
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 5 cut(s) 337, 370, 523, 601, 941
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 5 cut(s) 98, 114, 130, 249, 654
LmnI GCTCC 2 cut(s) 82, 870
Lsp1109I GCAGC 4 cut(s) 106, 688, 802, 958
LweI GCATC 2 cut(s) 292, 827
MaeII ACGT 2 cut(s) 477, 559
MaeIII GTNAC 1 cut(s) 329
MalI GATC 5 cut(s) 100, 116, 132, 251, 656
MbiI CCGCTC 1 cut(s) 977
MboI GATC 5 cut(s) 98, 114, 130, 249, 654
MflI RGATCY 2 cut(s) 130, 654
MhlI GDGCHC 1 cut(s) 239
MluCI AATT 8 cut(s) 171, 293, 349, 589, 638, 712, 740, 967
MlyI GAGTC 2 cut(s) 185, 207
MmeI TCCRAC 1 cut(s) 594
MseI TTAA 1 cut(s) 1008
MspA1I CMGCKG 1 cut(s) 949
MspI CCGG 2 cut(s) 80, 128
MspR9I CCNGG 2 cut(s) 380, 868
MvaI CCWGG 2 cut(s) 380, 868
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 5 cut(s) 59, 65, 74, 701, 821
NdeII GATC 5 cut(s) 98, 114, 130, 249, 654
NlaIII CATG 5 cut(s) 337, 370, 523, 601, 941
NlaIV GGNNCC 1 cut(s) 156
NmeAIII GCCGAG 1 cut(s) 35
NspI RCATGY 2 cut(s) 370, 523
PagI TCATGA 1 cut(s) 937
PcsI WCGNNNNNNNCGW 2 cut(s) 38, 245
PfeI GAWTC 4 cut(s) 245, 687, 795, 1042
PflMI CCANNNNNTGG 1 cut(s) 326
PkrI GCNGC 5 cut(s) 61, 96, 703, 817, 948
PleI GAGTC 2 cut(s) 184, 207
PpsI GAGTC 2 cut(s) 184, 207
Ppu21I YACGTR 1 cut(s) 560
PsiI TTATAA 1 cut(s) 900
Psp124BI GAGCTC 1 cut(s) 239
Psp6I CCWGG 2 cut(s) 378, 866
PspGI CCWGG 2 cut(s) 378, 866
PspN4I GGNNCC 1 cut(s) 156
PstI CTGCAG 1 cut(s) 735
PsuI RGATCY 2 cut(s) 130, 654
PvuII CAGCTG 1 cut(s) 949
RsaI GTAC 3 cut(s) 105, 539, 633
RsaNI GTAC 3 cut(s) 104, 538, 632
SacI GAGCTC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 1008
SatI GCNGC 5 cut(s) 60, 95, 702, 816, 947
Sau3AI GATC 5 cut(s) 98, 114, 130, 249, 654
SchI GAGTC 2 cut(s) 185, 207
ScrFI CCNGG 2 cut(s) 380, 868
SduI GDGCHC 1 cut(s) 239
SfaNI GCATC 2 cut(s) 292, 827
SfcI CTRYAG 2 cut(s) 497, 731
SmlI CTYRAG 2 cut(s) 215, 705
SmoI CTYRAG 2 cut(s) 215, 705
Sse9I AATT 8 cut(s) 171, 293, 349, 589, 638, 712, 740, 967
SsiI CCGC 7 cut(s) 59, 62, 158, 404, 761, 824, 977
SstI GAGCTC 1 cut(s) 239
StyD4I CCNGG 2 cut(s) 378, 866
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 2 cut(s) 480, 562
TaqI TCGA 5 cut(s) 38, 239, 248, 533, 793
TasI AATT 8 cut(s) 171, 293, 349, 589, 638, 712, 740, 967
TatI WGTACW 1 cut(s) 631
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 4 cut(s) 245, 687, 795, 1042
Tru1I TTAA 1 cut(s) 1008
Tru9I TTAA 1 cut(s) 1008
TseI GCWGC 4 cut(s) 94, 701, 815, 946
TspDTI ATGAA 3 cut(s) 278, 851, 926
TspGWI ACGGA 2 cut(s) 91, 236
Van91I CCANNNNNTGG 1 cut(s) 326
XapI RAATTY 3 cut(s) 638, 712, 740
XceI RCATGY 2 cut(s) 370, 523
XmiI GTMKAC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.