Rmu_sc0029942.1_g000001

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029942.1
OG0000541
Physical Location & Seq
Forward (+)
1 .. 1521
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029942.1_g000001.1.cds

Sequence Viewer

Length: 786 bp
gtggaaccgaagagaaggccattgcctgattacatggagaagattcagaaggattctatcaatgcgaatatgagaggtgttcttgtggattggttagtggaggttgcagatgaatatgagctccttccggagactcttcatctcgctgtgtcttatgttgataagtatctctccatgaatgtggtgttgaggagtgagcttcagctagtcggagttgcctcgatcttcattgcctcgaagtatgaagagattgatcctccaaatgtggatgagctttctgacattactgaaaatacattcactaaacaacaggtgatcaagatggaggctgatatactactatctctgaaatttgaaatgggaaatcccaatgttcgtacattcttgagaaaattcattgatcttgcccaagagagttactacaaaaatcctaatttgcagtttgagtctttgatttactacctcacagatctaagtttggtggattacaaacttgtgaagttcttgccttctattatagcagcatcggctgtatttctagcaagagttattattactagatcaaaaatgaatccttggtgtccagcactgcaagaatatactggttataaggcagtggatttgagagaatgtgttcttatcattcacgacttgtacttgggtagacgtggtggatctttggtagctgtacgagataaatacaaacaaattaagttaaaatgtgtggcaaaaatgcattgcccttcacagttaccacattccttgtttgaagctgtgaaagcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

261

Amino Acids

29.97

Weight (kDa)

6.51

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 609
AccI GTMKAC 1 cut(s) 664
AccIII TCCGGA 1 cut(s) 127
AclWI GGATC 2 cut(s) 248, 682
AcsI RAATTY 2 cut(s) 350, 392
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 3 cut(s) 379, 656, 690
AgsI TTSAA 2 cut(s) 356, 770
AjiI CACGTC 1 cut(s) 668
AluBI AGCT 6 cut(s) 121, 199, 205, 274, 686, 773
AluI AGCT 6 cut(s) 121, 199, 205, 274, 686, 773
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 2 cut(s) 248, 682
Aor13HI TCCGGA 1 cut(s) 127
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 521
ApoI RAATTY 2 cut(s) 350, 392
Asp700I GAANNNNTTC 1 cut(s) 633
AsuHPI GGTGA 1 cut(s) 325
BanII GRGCYC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 533
BccI CCATC 1 cut(s) 316
BclI TGATCA 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 3 cut(s) 206, 539, 558
BglII AGATCT 1 cut(s) 469
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
BmgBI CACGTC 1 cut(s) 668
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 533
BpuEI CTTGAG 1 cut(s) 406
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 575
BsaWI WCCGGW 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 607
Bse3DI GCAATG 3 cut(s) 20, 228, 736
Bse8I GATNNNNATC 1 cut(s) 165
BseAI TCCGGA 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 575
BseGI GGATG 1 cut(s) 274
BseJI GATNNNNATC 1 cut(s) 165
BseMI GCAATG 3 cut(s) 20, 228, 736
BseNI ACTGG 1 cut(s) 607
BseRI GAGGAG 1 cut(s) 205
BseXI GCAGC 1 cut(s) 533
BshFI GGCC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 123
Bsp13I TCCGGA 1 cut(s) 127
Bsp143I GATC 7 cut(s) 222, 253, 315, 400, 469, 560, 674
BspANI GGCC 1 cut(s) 19
BspEI TCCGGA 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 248, 682
BsrDI GCAATG 3 cut(s) 20, 228, 736
BsrI ACTGG 1 cut(s) 607
BssECI CCNNGG 1 cut(s) 575
BssMI GATC 7 cut(s) 222, 253, 315, 400, 469, 560, 674
BssT1I CCWWGG 1 cut(s) 575
Bst4CI ACNGT 1 cut(s) 750
Bst6I CTCTTC 3 cut(s) 5, 141, 240
BstDEI CTNAG 1 cut(s) 473
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 7 cut(s) 225, 256, 318, 403, 472, 563, 677
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 7 cut(s) 222, 253, 315, 400, 469, 560, 674
BstMWI GCNNNNNNNGC 2 cut(s) 527, 779
BstV1I GCAGC 1 cut(s) 533
BstX2I RGATCY 2 cut(s) 469, 674
BstXI CCANNNNNNTGG 1 cut(s) 181
BstYI RGATCY 2 cut(s) 469, 674
BsuRI GGCC 1 cut(s) 19
BtrI CACGTC 1 cut(s) 668
BtsCI GGATG 1 cut(s) 274
BtsI GCAGTG 2 cut(s) 587, 621
BtsIMutI CAGTG 2 cut(s) 587, 621
Csp6I GTAC 3 cut(s) 378, 655, 689
CspCI CAANNNNNGTGG 2 cut(s) 744, 779
CviAII CATG 3 cut(s) 34, 175, 783
CviJI RGCY 9 cut(s) 19, 121, 199, 205, 274, 329, 530, 686, 773
CviKI_1 RGCY 9 cut(s) 19, 121, 199, 205, 274, 329, 530, 686, 773
CviQI GTAC 3 cut(s) 378, 655, 689
DdeI CTNAG 1 cut(s) 473
DpnI GATC 7 cut(s) 224, 255, 317, 402, 471, 562, 676
DpnII GATC 7 cut(s) 222, 253, 315, 400, 469, 560, 674
Eam1104I CTCTTC 3 cut(s) 5, 141, 240
EarI CTCTTC 3 cut(s) 5, 141, 240
Ecl136II GAGCTC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 575
Eco24I GRGCYC 1 cut(s) 123
Eco53kI GAGCTC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 575
EcoT22I ATGCAT 1 cut(s) 738
EcoT38I GRGCYC 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 575
FaeI CATG 3 cut(s) 37, 178, 786
FatI CATG 3 cut(s) 33, 174, 782
FbaI TGATCA 1 cut(s) 315
FblI GTMKAC 1 cut(s) 664
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 522
FspBI CTAG 3 cut(s) 206, 539, 558
GluI GCNGC 1 cut(s) 522
HaeIII GGCC 1 cut(s) 19
HapII CCGG 1 cut(s) 128
Hin1II CATG 3 cut(s) 37, 178, 786
HinfI GANTC 5 cut(s) 43, 53, 133, 446, 571
HpaII CCGG 1 cut(s) 128
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 1 cut(s) 665
Hpy188I TCNGA 4 cut(s) 48, 212, 280, 348
Hpy188III TCNNGA 4 cut(s) 128, 319, 385, 647
Hpy8I GTNNAC 1 cut(s) 665
HpyAV CCTTC 5 cut(s) 9, 43, 134, 519, 753
HpyCH4III ACNGT 1 cut(s) 750
HpyCH4IV ACGT 1 cut(s) 667
HpyCH4V TGCA 4 cut(s) 107, 439, 592, 736
HpyF10VI GCNNNNNNNGC 2 cut(s) 527, 779
HpyF3I CTNAG 1 cut(s) 473
HpySE526I ACGT 1 cut(s) 667
Hsp92II CATG 3 cut(s) 37, 178, 786
Kpn2I TCCGGA 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 315
Kzo9I GATC 7 cut(s) 222, 253, 315, 400, 469, 560, 674
LmnI GCTCC 1 cut(s) 126
LpnPI CCDG 5 cut(s) 39, 141, 296, 588, 597
Lsp1109I GCAGC 1 cut(s) 533
LweI GCATC 1 cut(s) 533
MaeI CTAG 3 cut(s) 206, 539, 558
MaeII ACGT 1 cut(s) 667
MaeIII GTNAC 2 cut(s) 416, 750
MalI GATC 7 cut(s) 224, 255, 317, 402, 471, 562, 676
MboI GATC 7 cut(s) 222, 253, 315, 400, 469, 560, 674
MboII GAAGA 5 cut(s) 22, 52, 128, 217, 257
MflI RGATCY 2 cut(s) 469, 674
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 4 cut(s) 350, 392, 433, 708
MlyI GAGTC 2 cut(s) 127, 455
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 8 cut(s) 68, 94, 183, 229, 244, 267, 319, 473
Mph1103I ATGCAT 1 cut(s) 738
MroI TCCGGA 1 cut(s) 127
MroXI GAANNNNTTC 1 cut(s) 633
MseI TTAA 2 cut(s) 711, 716
MslI CAYNNNNRTG 1 cut(s) 179
MspI CCGG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 527, 779
NdeII GATC 7 cut(s) 222, 253, 315, 400, 469, 560, 674
NlaIII CATG 3 cut(s) 37, 178, 786
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 738
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 3 cut(s) 43, 53, 571
PkrI GCNGC 1 cut(s) 523
PleI GAGTC 2 cut(s) 127, 454
PpsI GAGTC 2 cut(s) 127, 454
PsiI TTATAA 1 cut(s) 609
Psp124BI GAGCTC 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 2 cut(s) 469, 674
RsaI GTAC 3 cut(s) 379, 656, 690
RsaNI GTAC 3 cut(s) 378, 655, 689
RseI CAYNNNNRTG 1 cut(s) 179
SacI GAGCTC 1 cut(s) 123
SaqAI TTAA 2 cut(s) 711, 716
SatI GCNGC 1 cut(s) 522
Sau3AI GATC 7 cut(s) 222, 253, 315, 400, 469, 560, 674
SchI GAGTC 2 cut(s) 127, 455
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 1 cut(s) 533
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 385
SmoI CTYRAG 1 cut(s) 385
Sse9I AATT 4 cut(s) 350, 392, 433, 708
SspMI CTAG 3 cut(s) 206, 539, 558
SstI GAGCTC 1 cut(s) 123
StyI CCWWGG 1 cut(s) 575
TaaI ACNGT 1 cut(s) 750
TaiI ACGT 1 cut(s) 670
TaqI TCGA 2 cut(s) 221, 236
TasI AATT 4 cut(s) 350, 392, 433, 708
TatI WGTACW 1 cut(s) 654
TfiI GAWTC 3 cut(s) 43, 53, 571
Tru1I TTAA 2 cut(s) 711, 716
Tru9I TTAA 2 cut(s) 711, 716
TscAI CASTG 2 cut(s) 594, 621
TseI GCWGC 1 cut(s) 521
TspDTI ATGAA 7 cut(s) 126, 128, 191, 217, 258, 385, 584
TspRI CASTG 2 cut(s) 594, 621
XapI RAATTY 2 cut(s) 350, 392
XmiI GTMKAC 1 cut(s) 664
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 3 cut(s) 206, 539, 558
Zsp2I ATGCAT 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.