Rorug05G0552300

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000541
Physical Location & Seq
Reverse (-)
74038685 .. 74041165
2481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0552300.1

Sequence Viewer

Length: 1215 bp
ATGTCTAGCTGCGTCGTGGATCTCCCTGAAGATATTATACTCAAGATTCTGTGCCGGTTGCCGGTCAAATCTTTGATCCGGTTCACTTGTGTCTCGAAACGGTGGCGTTCTCTGATCATTTCTGATCCTAAATTTGGAAAATCTCACTTCCAATTTGCTTCTCAGCAGAGAACCCTCCGTAGAAAAGTCCTCCTCACCTCCTACCCTGCAGTCATAGAGCCAGGTTCGACGCCCAATGCTTGTTACGATGGCAGTTGGAAGAAATGGGCTGAGGATAAGTTCATCACTCTATTTCAGTCTTTAGATGATAAGTTTTCAGTTAAGAATTTCACATTCCCATCTGAGGAGATTGAGCATTTGGAAGAAATGGGCTCCTGTAATGGTTTGGTACTTGTAGGCCGACCCTGTCGCGATCATTACAAGAGCTTGTTTATCTGGAACCCATCTACTGGATTCTCCCGCAAGATACCACATCCAAGTTTCAGGATGAAGTCAGGTAGATACTTTTTGAATTATGGTTTTGGTCATGTGTCCGCCAGCGACGACTACAAACTTGTCTCCGTAGTACCTGACCCCAGTGATATGCTGGAAGTCCATATCTTCTCTCTGAGTGCCAACATTTGGAAAGTTATTACAGCTCCTTACTCGTCATTTCCATGCTGGGTCAATAGACACGGGACTTTTTCAAATGGAGCAATTCACTGGGTCACTCCCTGCGGAAATAAGACTTTGGACCCAGTTATATATGCTTTTATTTTGGCCGAGGAGGAGTTCCAGCGAGTGCCATTGCCACCTGTTTTGTGGCAAAATGAAGAAGACAGAAATCCGACAAAGATAACAACTCTGGTTCATTTAGGAGGATACCTTTGCATATGGTCTCGGAAGTGTTTTGATACTCAGGGAGGTGAAGTTTGGGCGATGACAGAGTATGGGGTGCCTGAATCTTGGGTTAAACTCTTTCAATTTAATATACACGATTTCCGCAATATCTTTGATGTAGAACAGAGTCCATGGGATCTGTGTTTTATTACAGAAGGCGATACGATGGTGTTGAGACTGAATAAGGAGTTGTTATGGATTCAATGCCGTAATGAAGAGAAGCCAGTCTGCAGTGGAAGGTATAGGCTTGAGAAGGTACAACCTAAGGTGTCAAACCTGGCGTTTTATTTTCGCACGACCGTATACGATGAAACTCTAGTTTCTGTAGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

404

Amino Acids

46.71

Weight (kDa)

7.52

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 43 7.5e-12 F-box domain
F-box-like PF12937 7 - 42 7.3e-09 F-box-like
FBA_3 PF08268 94 - 318 1.8e-15 F-box associated beta propeller domain
FBA_1 PF07734 117 - 355 1.9e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 934
AccB7I CCANNNNNTGG 2 cut(s) 449, 621
AccI GTMKAC 1 cut(s) 1182
AccII CGCG 1 cut(s) 411
AciI CCGC 4 cut(s) 460, 534, 717, 982
AclWI GGATC 4 cut(s) 27, 70, 119, 1023
AcoI YGGCCR 1 cut(s) 759
AcsI RAATTY 2 cut(s) 131, 325
AcuI CTGAAG 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 3 cut(s) 390, 567, 1137
AfiI CCNNNNNNNGG 5 cut(s) 61, 134, 343, 449, 621
AgsI TTSAA 4 cut(s) 511, 687, 962, 1082
AjnI CCWGG 2 cut(s) 220, 1155
AluBI AGCT 4 cut(s) 9, 426, 638, 1208
AluI AGCT 4 cut(s) 9, 426, 638, 1208
Alw26I GTCTC 4 cut(s) 97, 562, 882, 1048
AlwI GGATC 4 cut(s) 27, 70, 119, 1023
AoxI GGCC 2 cut(s) 397, 759
ApeKI GCWGC 1 cut(s) 9
ApoI RAATTY 2 cut(s) 131, 325
AspS9I GGNCC 1 cut(s) 733
AsuHPI GGTGA 2 cut(s) 187, 917
AvaII GGWCC 1 cut(s) 733
AxyI CCTNAGG 1 cut(s) 1143
BaeI ACNNNNGTAYC 2 cut(s) 1032, 1065
BanI GGYRCC 1 cut(s) 934
BanII GRGCYC 1 cut(s) 374
BarI GAAGNNNNNNTAC 2 cut(s) 21, 53
BbsI GAAGAC 1 cut(s) 822
BbvCI CCTCAGC 1 cut(s) 270
BccI CCATC 4 cut(s) 242, 346, 451, 1039
BceAI ACGGC 1 cut(s) 1071
BciT130I CCWGG 2 cut(s) 222, 1157
BciVI GTATCC 1 cut(s) 854
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 4 cut(s) 97, 562, 882, 1048
BfaI CTAG 2 cut(s) 6, 1196
BfmI CTRYAG 3 cut(s) 207, 1108, 1203
BfuI GTATCC 1 cut(s) 854
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
Bme1390I CCNGG 2 cut(s) 222, 1157
Bme18I GGWCC 1 cut(s) 733
BmgT120I GGNCC 1 cut(s) 733
BmiI GGNNCC 4 cut(s) 373, 440, 735, 936
BmrFI CCNGG 2 cut(s) 222, 1157
BmrI ACTGGG 3 cut(s) 570, 712, 731
BmuI ACTGGG 3 cut(s) 570, 712, 731
BpiI GAAGAC 1 cut(s) 822
Bpu10I CCTNAGC 1 cut(s) 270
BpuEI CTTGAG 2 cut(s) 26, 1148
BsaHI GRCGYC 1 cut(s) 230
BsaI GGTCTC 1 cut(s) 882
BsaJI CCNNGG 2 cut(s) 762, 1010
BsaWI WCCGGW 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 894, 924
Bsc4I CCNNNNNNNGG 5 cut(s) 61, 134, 343, 449, 621
Bse118I RCCGGY 2 cut(s) 54, 61
Bse1I ACTGG 5 cut(s) 454, 576, 707, 737, 1103
Bse21I CCTNAGG 1 cut(s) 1143
Bse3DI GCAATG 1 cut(s) 785
BseBI CCWGG 2 cut(s) 222, 1157
BseDI CCNNGG 2 cut(s) 762, 1010
BseGI GGATG 2 cut(s) 472, 492
BseLI CCNNNNNNNGG 5 cut(s) 61, 134, 343, 449, 621
BseMI GCAATG 1 cut(s) 785
BseMII CTCAG 5 cut(s) 176, 261, 333, 599, 911
BseNI ACTGG 5 cut(s) 454, 576, 707, 737, 1103
BseRI GAGGAG 4 cut(s) 182, 359, 779, 782
BseYI CCCAGC 1 cut(s) 660
Bsh1236I CGCG 1 cut(s) 411
Bsh1285I CGRYCG 1 cut(s) 1179
BshFI GGCC 2 cut(s) 399, 761
BshNI GGYRCC 1 cut(s) 934
BsiEI CGRYCG 1 cut(s) 1179
BsiSI CCGG 3 cut(s) 55, 62, 79
BslFI GGGAC 1 cut(s) 691
BslI CCNNNNNNNGG 5 cut(s) 61, 134, 343, 449, 621
BsmAI GTCTC 4 cut(s) 97, 562, 882, 1048
BsmFI GGGAC 1 cut(s) 691
BsnI GGCC 2 cut(s) 399, 761
Bso31I GGTCTC 1 cut(s) 882
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 6 cut(s) 19, 75, 114, 124, 412, 1015
Bsp19I CCATGG 1 cut(s) 1010
Bsp68I TCGCGA 1 cut(s) 411
BspACI CCGC 4 cut(s) 460, 534, 717, 982
BspANI GGCC 2 cut(s) 399, 761
BspCNI CTCAG 5 cut(s) 175, 262, 334, 600, 910
BspFNI CGCG 1 cut(s) 411
BspLI GGNNCC 4 cut(s) 373, 440, 735, 936
BspMAI CTGCAG 2 cut(s) 211, 1112
BspPI GGATC 4 cut(s) 27, 70, 119, 1023
BspT107I GGYRCC 1 cut(s) 934
BspTNI GGTCTC 1 cut(s) 882
BsrDI GCAATG 1 cut(s) 785
BsrFI RCCGGY 2 cut(s) 54, 61
BsrI ACTGG 5 cut(s) 454, 576, 707, 737, 1103
BssAI RCCGGY 2 cut(s) 54, 61
BssECI CCNNGG 2 cut(s) 762, 1010
BssMI GATC 6 cut(s) 19, 75, 114, 124, 412, 1015
BssNAI GTATAC 1 cut(s) 1183
BssNI GRCGYC 1 cut(s) 230
BssT1I CCWWGG 1 cut(s) 1010
Bst1107I GTATAC 1 cut(s) 1183
Bst2UI CCWGG 2 cut(s) 222, 1157
Bst4CI ACNGT 2 cut(s) 102, 1180
Bst6I CTCTTC 1 cut(s) 1089
BstACI GRCGYC 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 538
BstDEI CTNAG 6 cut(s) 162, 270, 342, 608, 897, 1143
BstDSI CCRYGG 1 cut(s) 1010
BstF5I GGATG 2 cut(s) 472, 492
BstFNI CGCG 1 cut(s) 411
BstKTI GATC 6 cut(s) 22, 78, 117, 127, 415, 1018
BstMAI GTCTC 4 cut(s) 97, 562, 882, 1048
BstMBI GATC 6 cut(s) 19, 75, 114, 124, 412, 1015
BstMCI CGRYCG 1 cut(s) 1179
BstNI CCWGG 2 cut(s) 222, 1157
BstSCI CCNGG 2 cut(s) 220, 1155
BstSFI CTRYAG 3 cut(s) 207, 1108, 1203
BstUI CGCG 1 cut(s) 411
BstV2I GAAGAC 1 cut(s) 822
BstX2I RGATCY 2 cut(s) 19, 1015
BstYI RGATCY 2 cut(s) 19, 1015
BstZ17I GTATAC 1 cut(s) 1183
Bsu36I CCTNAGG 1 cut(s) 1143
BsuI GTATCC 1 cut(s) 854
BsuRI GGCC 2 cut(s) 399, 761
BtgI CCRYGG 1 cut(s) 1010
BtgZI GCGATG 1 cut(s) 932
BtsCI GGATG 2 cut(s) 472, 492
BtsI GCAGTG 1 cut(s) 1117
BtsIMutI CAGTG 3 cut(s) 583, 700, 1117
BtuMI TCGCGA 1 cut(s) 411
Cac8I GCNNGC 1 cut(s) 538
Cfr10I RCCGGY 2 cut(s) 54, 61
Cfr13I GGNCC 1 cut(s) 733
CseI GACGC 1 cut(s) 238
Csp6I GTAC 3 cut(s) 389, 566, 1136
CspCI CAANNNNNGTGG 2 cut(s) 780, 815
CviAII CATG 3 cut(s) 527, 657, 1011
CviQI GTAC 3 cut(s) 389, 566, 1136
DdeI CTNAG 6 cut(s) 162, 270, 342, 608, 897, 1143
DpnI GATC 6 cut(s) 21, 77, 116, 126, 414, 1017
DpnII GATC 6 cut(s) 19, 75, 114, 124, 412, 1015
EaeI YGGCCR 1 cut(s) 759
Eam1104I CTCTTC 1 cut(s) 1089
EarI CTCTTC 1 cut(s) 1089
EciI GGCGGA 1 cut(s) 523
Eco130I CCWWGG 1 cut(s) 1010
Eco24I GRGCYC 1 cut(s) 374
Eco31I GGTCTC 1 cut(s) 882
Eco47I GGWCC 1 cut(s) 733
Eco57I CTGAAG 1 cut(s) 48
Eco81I CCTNAGG 1 cut(s) 1143
EcoRII CCWGG 2 cut(s) 220, 1155
EcoT14I CCWWGG 1 cut(s) 1010
EcoT38I GRGCYC 1 cut(s) 374
ErhI CCWWGG 1 cut(s) 1010
FaeI CATG 3 cut(s) 530, 660, 1014
FaqI GGGAC 1 cut(s) 691
FatI CATG 3 cut(s) 526, 656, 1010
FauI CCCGC 1 cut(s) 467
FauNDI CATATG 1 cut(s) 872
FbaI TGATCA 1 cut(s) 114
FblI GTMKAC 1 cut(s) 1182
Fnu4HI GCNGC 1 cut(s) 10
FokI GGATG 2 cut(s) 459, 499
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 1 cut(s) 10
FspBI CTAG 2 cut(s) 6, 1196
GluI GCNGC 1 cut(s) 10
GsaI CCCAGC 1 cut(s) 664
HaeIII GGCC 2 cut(s) 399, 761
HapII CCGG 3 cut(s) 55, 62, 79
HgaI GACGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 3 cut(s) 530, 660, 1014
HinfI GANTC 5 cut(s) 46, 453, 941, 1006, 1078
HpaII CCGG 3 cut(s) 55, 62, 79
HphI GGTGA 2 cut(s) 187, 917
Hpy166II GTNNAC 2 cut(s) 84, 1183
Hpy188I TCNGA 6 cut(s) 114, 124, 343, 609, 828, 882
Hpy188III TCNNGA 5 cut(s) 43, 94, 410, 436, 484
Hpy8I GTNNAC 2 cut(s) 84, 1183
Hpy99I CGWCG 3 cut(s) 17, 232, 545
HpyAV CCTTC 3 cut(s) 1028, 1110, 1126
HpyCH4III ACNGT 2 cut(s) 102, 1180
HpyCH4V TGCA 3 cut(s) 209, 870, 1110
HpyF3I CTNAG 6 cut(s) 162, 270, 342, 608, 897, 1143
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 3 cut(s) 530, 660, 1014
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 6 cut(s) 19, 75, 114, 124, 412, 1015
LmnI GCTCC 3 cut(s) 377, 643, 692
MaeI CTAG 2 cut(s) 6, 1196
MaeIII GTNAC 2 cut(s) 242, 706
MalI GATC 6 cut(s) 21, 77, 116, 126, 414, 1017
MboI GATC 6 cut(s) 19, 75, 114, 124, 412, 1015
MboII GAAGA 7 cut(s) 41, 271, 374, 592, 824, 827, 1106
MflI RGATCY 2 cut(s) 19, 1015
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 6 cut(s) 131, 152, 325, 511, 696, 962
MlyI GAGTC 1 cut(s) 1015
MmeI TCCRAC 2 cut(s) 236, 851
MseI TTAA 3 cut(s) 321, 951, 966
MslI CAYNNNNRTG 1 cut(s) 655
MspI CCGG 3 cut(s) 55, 62, 79
MspR9I CCNGG 2 cut(s) 222, 1157
MvaI CCWGG 2 cut(s) 222, 1157
MvnI CGCG 1 cut(s) 411
NcoI CCATGG 1 cut(s) 1010
NdeI CATATG 1 cut(s) 872
NdeII GATC 6 cut(s) 19, 75, 114, 124, 412, 1015
NlaIII CATG 3 cut(s) 530, 660, 1014
NlaIV GGNNCC 4 cut(s) 373, 440, 735, 936
NmeAIII GCCGAG 1 cut(s) 787
NmuCI GTSAC 1 cut(s) 706
NruI TCGCGA 1 cut(s) 411
PfeI GAWTC 4 cut(s) 46, 453, 941, 1078
PflFI GACNNNGTC 1 cut(s) 405
PflMI CCANNNNNTGG 2 cut(s) 449, 621
PkrI GCNGC 1 cut(s) 11
PleI GAGTC 1 cut(s) 1014
PpsI GAGTC 1 cut(s) 1014
Psp6I CCWGG 2 cut(s) 220, 1155
PspFI CCCAGC 1 cut(s) 660
PspGI CCWGG 2 cut(s) 220, 1155
PspN4I GGNNCC 4 cut(s) 373, 440, 735, 936
PspPI GGNCC 1 cut(s) 733
PstI CTGCAG 2 cut(s) 211, 1112
PsuI RGATCY 2 cut(s) 19, 1015
PsyI GACNNNGTC 1 cut(s) 405
RruI TCGCGA 1 cut(s) 411
RsaI GTAC 3 cut(s) 390, 567, 1137
RsaNI GTAC 3 cut(s) 389, 566, 1136
RseI CAYNNNNRTG 1 cut(s) 655
SaqAI TTAA 3 cut(s) 321, 951, 966
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 6 cut(s) 19, 75, 114, 124, 412, 1015
Sau96I GGNCC 1 cut(s) 733
SchI GAGTC 1 cut(s) 1015
ScrFI CCNGG 2 cut(s) 222, 1157
SduI GDGCHC 1 cut(s) 374
SfcI CTRYAG 3 cut(s) 207, 1108, 1203
SinI GGWCC 1 cut(s) 733
SmiMI CAYNNNNRTG 1 cut(s) 655
SmlI CTYRAG 2 cut(s) 41, 1127
SmoI CTYRAG 2 cut(s) 41, 1127
Sse9I AATT 6 cut(s) 131, 152, 325, 511, 696, 962
SsiI CCGC 4 cut(s) 460, 534, 717, 982
SspMI CTAG 2 cut(s) 6, 1196
StyD4I CCNGG 2 cut(s) 220, 1155
StyI CCWWGG 1 cut(s) 1010
TaaI ACNGT 2 cut(s) 102, 1180
TaqI TCGA 2 cut(s) 95, 227
TasI AATT 6 cut(s) 131, 152, 325, 511, 696, 962
TfiI GAWTC 4 cut(s) 46, 453, 941, 1078
Tru1I TTAA 3 cut(s) 321, 951, 966
Tru9I TTAA 3 cut(s) 321, 951, 966
TscAI CASTG 3 cut(s) 583, 707, 1117
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 6 cut(s) 271, 503, 825, 839, 1107, 1203
TspGWI ACGGA 2 cut(s) 167, 550
TspRI CASTG 3 cut(s) 583, 707, 1117
Tth111I GACNNNGTC 1 cut(s) 405
Van91I CCANNNNNTGG 2 cut(s) 449, 621
VpaK11BI GGWCC 1 cut(s) 733
XapI RAATTY 2 cut(s) 131, 325
XcmI CCANNNNNNNNNTGG 2 cut(s) 583, 798
XmiI GTMKAC 1 cut(s) 1182
XspI CTAG 2 cut(s) 6, 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.