Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000541

Physical Location & Seq

Genomic Coordinates Reverse (-)

66220660 .. 66221004

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG481300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCGGAGAAAGAGAACTGCGTCCGCGTCACGCGCGCCATGAAACGGAAGGCAGAAGCCTCCGCCGTCGACCAAACGCCTCCCAGGAAGCGCGTCGTACTGGGCGAGCTCCCCAACCTCCAAAACGCCGTCGTACCTGCCAATGAGGGTTCTCGGGTTGAGCCCCACAAGCGGAAATCCAGAACTAAATCCCGGCGGGCGGCGAAGAAAGCGCTGCCTATCCCGGAAACCGCGCCGGAGGTTGAAACGACGCCGTCGGATCCCCAAATGTGCGAGCCTTATTCACGTGACATATACGAGTATCTTCACAAGCTCGAGGTACTGTACATTTCTGAAATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

114

Amino Acids

12.94

Weight (kDa)

9.17

Isoelectric Point (pI)

55.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca	FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica	MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica	Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis	pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis	RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata	RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora	Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii	Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa	Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha	Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana	Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	5 cut(s)	27, 34, 36, 93, 233
AciI	CCGC	7 cut(s)	5, 25, 63, 172, 196, 200, 231
AclWI	GGATC	2 cut(s)	254, 267
AcvI	CACGTG	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	4 cut(s)	99, 135, 321, 326
AfeI	AGCGCT	1 cut(s)	213
AfiI	CCNNNNNNNGG	3 cut(s)	45, 171, 199
AgsI	TTSAA	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	83
AluBI	AGCT	2 cut(s)	109, 313
AluI	AGCT	2 cut(s)	109, 313
Alw21I	GWGCWC	1 cut(s)	111
AlwI	GGATC	2 cut(s)	254, 267
Ama87I	CYCGRG	2 cut(s)	153, 314
Aor51HI	AGCGCT	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	214
AspLEI	GCGC	5 cut(s)	36, 38, 93, 214, 235
AsuC2I	CCSGG	2 cut(s)	193, 224
AvaI	CYCGRG	2 cut(s)	153, 314
BamHI	GGATCC	1 cut(s)	259
BanII	GRGCYC	2 cut(s)	111, 165
BbrPI	CACGTG	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	201
BceAI	ACGGC	3 cut(s)	50, 113, 238
BciT130I	CCWGG	1 cut(s)	85
BcnI	CCSGG	2 cut(s)	193, 224
BfoI	RGCGCY	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	2 cut(s)	201, 215
BlsI	GCNGC	2 cut(s)	202, 216
Bme1390I	CCNGG	3 cut(s)	85, 193, 224
BmeT110I	CYCGRG	2 cut(s)	153, 314
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	3 cut(s)	85, 193, 224
BmrI	ACTGGG	1 cut(s)	110
BmuI	ACTGGG	1 cut(s)	110
BpuMI	CCSGG	2 cut(s)	193, 224
BsaAI	YACGTR	1 cut(s)	287
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 171, 199
Bse1I	ACTGG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	83
BseLI	CCNNNNNNNGG	3 cut(s)	45, 171, 199
BseNI	ACTGG	1 cut(s)	105
BsePI	GCGCGC	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	201
Bsh1236I	CGCG	5 cut(s)	27, 34, 36, 93, 233
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	2 cut(s)	153, 314
BsiSI	CCGG	3 cut(s)	193, 224, 236
BslI	CCNNNNNNNGG	3 cut(s)	45, 171, 199
BsoBI	CYCGRG	2 cut(s)	153, 314
Bsp1286I	GDGCHC	2 cut(s)	111, 165
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	7 cut(s)	5, 25, 63, 172, 196, 200, 231
BspFNI	CGCG	5 cut(s)	27, 34, 36, 93, 233
BspLI	GGNNCC	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	2 cut(s)	254, 267
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	83
BssHII	GCGCGC	1 cut(s)	34
BssMI	GATC	1 cut(s)	259
BssNI	GRCGYC	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	324
BstACI	GRCGYC	1 cut(s)	251
BstAUI	TGTACA	1 cut(s)	324
BstBAI	YACGTR	1 cut(s)	287
BstC8I	GCNNGC	4 cut(s)	36, 107, 198, 275
BstFNI	CGCG	5 cut(s)	27, 34, 36, 93, 233
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	5 cut(s)	36, 38, 93, 214, 235
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 169, 209
BstNI	CCWGG	1 cut(s)	85
BstSCI	CCNGG	3 cut(s)	83, 191, 222
BstUI	CGCG	5 cut(s)	27, 34, 36, 93, 233
BstV1I	GCAGC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	4 cut(s)	36, 107, 198, 275
CfoI	GCGC	5 cut(s)	36, 38, 93, 214, 235
CseI	GACGC	4 cut(s)	10, 16, 82, 259
Csp6I	GTAC	4 cut(s)	98, 134, 320, 325
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	5 cut(s)	59, 109, 163, 277, 313
CviKI_1	RGCY	5 cut(s)	59, 109, 163, 277, 313
CviQI	GTAC	4 cut(s)	98, 134, 320, 325
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
EciI	GGCGGA	2 cut(s)	20, 52
Ecl136II	GAGCTC	1 cut(s)	109
Eco24I	GRGCYC	2 cut(s)	111, 165
Eco47III	AGCGCT	1 cut(s)	213
Eco53kI	GAGCTC	1 cut(s)	109
Eco72I	CACGTG	1 cut(s)	287
Eco88I	CYCGRG	2 cut(s)	153, 314
EcoICRI	GAGCTC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	83
EcoT38I	GRGCYC	2 cut(s)	111, 165
FaeI	CATG	1 cut(s)	43
FaiI	YATR	3 cut(s)	41, 293, 295
FatI	CATG	1 cut(s)	39
FauI	CCCGC	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	201, 215
FriOI	GRGCYC	2 cut(s)	111, 165
Fsp4HI	GCNGC	2 cut(s)	201, 215
GlaI	GCGC	5 cut(s)	35, 37, 92, 213, 234
GluI	GCNGC	2 cut(s)	201, 215
HaeII	RGCGCY	1 cut(s)	215
HapII	CCGG	3 cut(s)	193, 224, 236
HgaI	GACGC	4 cut(s)	10, 16, 82, 259
HhaI	GCGC	5 cut(s)	36, 38, 93, 214, 235
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	5 cut(s)	34, 36, 91, 212, 233
HinP1I	GCGC	5 cut(s)	34, 36, 91, 212, 233
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HpaII	CCGG	3 cut(s)	193, 224, 236
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	259, 334
Hpy188III	TCNNGA	1 cut(s)	180
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	5 cut(s)	71, 98, 134, 253, 259
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4IV	ACGT	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 169, 209
HpySE526I	ACGT	1 cut(s)	286
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	5 cut(s)	34, 36, 91, 212, 233
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	8 cut(s)	70, 86, 97, 150, 193, 206, 237, 249
Lsp1109I	GCAGC	1 cut(s)	201
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	2 cut(s)	28, 287
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	2 cut(s)	217, 296
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	111, 165
MluCI	AATT	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	6 cut(s)	70, 90, 128, 139, 232, 310
MspI	CCGG	3 cut(s)	193, 224, 236
MspR9I	CCNGG	3 cut(s)	85, 193, 224
MvaI	CCWGG	1 cut(s)	85
MvnI	CGCG	5 cut(s)	27, 34, 36, 93, 233
MwoI	GCNNNNNNNGC	3 cut(s)	33, 169, 209
NciI	CCSGG	2 cut(s)	193, 224
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	2 cut(s)	28, 287
PaeR7I	CTCGAG	1 cut(s)	314
PauI	GCGCGC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PflFI	GACNNNGTC	1 cut(s)	253
PfoI	TCCNGGA	1 cut(s)	222
PkrI	GCNGC	2 cut(s)	202, 216
PmaCI	CACGTG	1 cut(s)	287
PmlI	CACGTG	1 cut(s)	287
Ppu21I	YACGTR	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	83
PspCI	CACGTG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	261
PspXI	VCTCGAGB	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	259
PsyI	GACNNNGTC	1 cut(s)	253
PteI	GCGCGC	1 cut(s)	34
RsaI	GTAC	4 cut(s)	99, 135, 321, 326
RsaNI	GTAC	4 cut(s)	98, 134, 320, 325
SacI	GAGCTC	1 cut(s)	111
SalI	GTCGAC	1 cut(s)	68
SatI	GCNGC	2 cut(s)	201, 215
Sau3AI	GATC	1 cut(s)	259
ScrFI	CCNGG	3 cut(s)	85, 193, 224
SduI	GDGCHC	2 cut(s)	111, 165
SetI	ASST	7 cut(s)	111, 120, 139, 243, 289, 315, 321
Sfr274I	CTCGAG	1 cut(s)	314
SlaI	CTCGAG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	7 cut(s)	5, 25, 63, 172, 196, 200, 231
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	3 cut(s)	83, 191, 222
TaaI	ACNGT	1 cut(s)	324
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	2 cut(s)	69, 315
TasI	AATT	1 cut(s)	336
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	1 cut(s)	203
TseFI	GTSAC	2 cut(s)	28, 287
TseI	GCWGC	1 cut(s)	214
Tsp45I	GTSAC	2 cut(s)	28, 287
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	61
Tth111I	GACNNNGTC	1 cut(s)	253
XhoI	CTCGAG	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.