Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036151.1

Orthogroup ID

OG0000541

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 624

Gene Structure 623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036151.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 445 bp

atggcggagaaagagaactgcgtccgcgtcacgcgcgccatgaaacggaaggccgaagcctccgccgtcgaccaaacgccccccaggaagcgcgtcgtactgggcgagctccccaacctccaaaacgccgtcgttccggcgaatgagggttctcgggttgagccccacaagcggaaatccagaactaaatcccgggcggcgaagaaagcgctgcctgtcccggaaaccgcgccggaggttgaaacgacgccgtcggatccccaaatgtgcgagccttattcacgtgacatatacgagtatcttcacaagctcgaggtggatccaaatagaagacctttgcctgattacttggcaaaggttcagaaggatatcactgctaatatgagaggagtcttggtggactggttggtggaagttgctgaggaatacaagctcctttctgata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

148

Amino Acids

16.79

Weight (kDa)

8.85

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca	FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica	MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica	Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis	pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis	RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata	RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora	Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii	Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa	Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha	Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana	Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	5 cut(s)	27, 34, 36, 93, 230
AciI	CCGC	6 cut(s)	5, 25, 63, 172, 197, 228
AclWI	GGATC	4 cut(s)	251, 264, 314, 327
AcvI	CACGTG	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	248
AfaI	GTAC	1 cut(s)	99
AfeI	AGCGCT	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	45, 171
AgsI	TTSAA	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	83
AluBI	AGCT	3 cut(s)	109, 310, 433
AluI	AGCT	3 cut(s)	109, 310, 433
Alw21I	GWGCWC	1 cut(s)	111
AlwI	GGATC	4 cut(s)	251, 264, 314, 327
Ama87I	CYCGRG	3 cut(s)	153, 192, 311
Aor51HI	AGCGCT	1 cut(s)	210
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	211
AspLEI	GCGC	5 cut(s)	36, 38, 93, 211, 232
AsuC2I	CCSGG	3 cut(s)	193, 194, 221
AvaI	CYCGRG	3 cut(s)	153, 192, 311
BamHI	GGATCC	2 cut(s)	256, 319
BanII	GRGCYC	2 cut(s)	111, 165
BbrPI	CACGTG	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	111
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	198
BceAI	ACGGC	3 cut(s)	50, 113, 235
BciT130I	CCWGG	1 cut(s)	85
BcnI	CCSGG	3 cut(s)	193, 194, 221
BfoI	RGCGCY	1 cut(s)	212
BisI	GCNGC	2 cut(s)	198, 212
BlsI	GCNGC	2 cut(s)	199, 213
Bme1390I	CCNGG	4 cut(s)	85, 193, 194, 221
BmeT110I	CYCGRG	3 cut(s)	153, 192, 311
BmiI	GGNNCC	2 cut(s)	258, 321
BmrFI	CCNGG	4 cut(s)	85, 193, 194, 221
BmrI	ACTGGG	1 cut(s)	110
BmuI	ACTGGG	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	420
BpuMI	CCSGG	3 cut(s)	193, 194, 221
BsaAI	YACGTR	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	83, 192
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 171
Bse1I	ACTGG	2 cut(s)	105, 407
BseBI	CCWGG	1 cut(s)	85
BseDI	CCNNGG	2 cut(s)	83, 192
BseLI	CCNNNNNNNGG	2 cut(s)	45, 171
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	2 cut(s)	105, 407
BsePI	GCGCGC	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	402
BseXI	GCAGC	1 cut(s)	198
Bsh1236I	CGCG	5 cut(s)	27, 34, 36, 93, 230
BshFI	GGCC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	3 cut(s)	153, 192, 311
BsiSI	CCGG	4 cut(s)	137, 193, 221, 233
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	45, 171
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	53
BsoBI	CYCGRG	3 cut(s)	153, 192, 311
Bsp1286I	GDGCHC	2 cut(s)	111, 165
Bsp143I	GATC	2 cut(s)	256, 319
BspACI	CCGC	6 cut(s)	5, 25, 63, 172, 197, 228
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	5 cut(s)	27, 34, 36, 93, 230
BspLI	GGNNCC	2 cut(s)	258, 321
BspPI	GGATC	4 cut(s)	251, 264, 314, 327
BsrI	ACTGG	2 cut(s)	105, 407
BssECI	CCNNGG	2 cut(s)	83, 192
BssHII	GCGCGC	1 cut(s)	34
BssMI	GATC	2 cut(s)	256, 319
BssNI	GRCGYC	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	85
BstACI	GRCGYC	1 cut(s)	248
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	36, 107, 272
BstDEI	CTNAG	1 cut(s)	420
BstFNI	CGCG	5 cut(s)	27, 34, 36, 93, 230
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	5 cut(s)	36, 38, 93, 211, 232
BstKTI	GATC	2 cut(s)	259, 322
BstMBI	GATC	2 cut(s)	256, 319
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 169, 206
BstNI	CCWGG	1 cut(s)	85
BstSCI	CCNGG	4 cut(s)	83, 191, 192, 219
BstUI	CGCG	5 cut(s)	27, 34, 36, 93, 230
BstV1I	GCAGC	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	337
BstX2I	RGATCY	2 cut(s)	256, 319
BstYI	RGATCY	2 cut(s)	256, 319
BsuRI	GGCC	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	3 cut(s)	36, 107, 272
CfoI	GCGC	5 cut(s)	36, 38, 93, 211, 232
Cfr9I	CCCGGG	1 cut(s)	192
CseI	GACGC	4 cut(s)	10, 16, 82, 256
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	7 cut(s)	53, 59, 109, 163, 274, 310, 433
CviKI_1	RGCY	7 cut(s)	53, 59, 109, 163, 274, 310, 433
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	2 cut(s)	258, 321
DpnII	GATC	2 cut(s)	256, 319
EciI	GGCGGA	2 cut(s)	20, 52
Ecl136II	GAGCTC	1 cut(s)	109
Eco24I	GRGCYC	2 cut(s)	111, 165
Eco32I	GATATC	1 cut(s)	370
Eco47III	AGCGCT	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	109
Eco72I	CACGTG	1 cut(s)	284
Eco88I	CYCGRG	3 cut(s)	153, 192, 311
EcoICRI	GAGCTC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	83
EcoRV	GATATC	1 cut(s)	370
EcoT38I	GRGCYC	2 cut(s)	111, 165
FaeI	CATG	1 cut(s)	43
FaiI	YATR	4 cut(s)	41, 290, 292, 383
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	198, 212
FriOI	GRGCYC	2 cut(s)	111, 165
Fsp4HI	GCNGC	2 cut(s)	198, 212
GlaI	GCGC	5 cut(s)	35, 37, 92, 210, 231
GluI	GCNGC	2 cut(s)	198, 212
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	4 cut(s)	137, 193, 221, 233
HgaI	GACGC	4 cut(s)	10, 16, 82, 256
HhaI	GCGC	5 cut(s)	36, 38, 93, 211, 232
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	5 cut(s)	34, 36, 91, 209, 230
HinP1I	GCGC	5 cut(s)	34, 36, 91, 209, 230
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	390
HpaII	CCGG	4 cut(s)	137, 193, 221, 233
Hpy166II	GTNNAC	2 cut(s)	70, 400
Hpy188I	TCNGA	3 cut(s)	256, 363, 442
Hpy188III	TCNNGA	1 cut(s)	180
Hpy8I	GTNNAC	2 cut(s)	70, 400
Hpy99I	CGWCG	5 cut(s)	71, 98, 134, 250, 256
HpyAV	CCTTC	2 cut(s)	43, 358
HpyCH4IV	ACGT	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 169, 206
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	1 cut(s)	283
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	5 cut(s)	34, 36, 91, 209, 230
Kzo9I	GATC	2 cut(s)	256, 319
LmnI	GCTCC	2 cut(s)	114, 438
Lsp1109I	GCAGC	1 cut(s)	198
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	2 cut(s)	28, 284
MalI	GATC	2 cut(s)	258, 321
MboI	GATC	2 cut(s)	256, 319
MboII	GAAGA	3 cut(s)	214, 293, 342
MflI	RGATCY	2 cut(s)	256, 319
MhlI	GDGCHC	2 cut(s)	111, 165
MlyI	GAGTC	1 cut(s)	399
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	7 cut(s)	70, 128, 139, 229, 307, 380, 415
MspI	CCGG	4 cut(s)	137, 193, 221, 233
MspR9I	CCNGG	4 cut(s)	85, 193, 194, 221
MvaI	CCWGG	1 cut(s)	85
MvnI	CGCG	5 cut(s)	27, 34, 36, 93, 230
MwoI	GCNNNNNNNGC	3 cut(s)	33, 169, 206
NciI	CCSGG	3 cut(s)	193, 194, 221
NdeII	GATC	2 cut(s)	256, 319
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	2 cut(s)	258, 321
NmuCI	GTSAC	2 cut(s)	28, 284
PaeR7I	CTCGAG	1 cut(s)	311
PauI	GCGCGC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PflFI	GACNNNGTC	1 cut(s)	250
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	199, 213
PleI	GAGTC	1 cut(s)	398
PmaCI	CACGTG	1 cut(s)	284
PmlI	CACGTG	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	398
Ppu21I	YACGTR	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	83
PspCI	CACGTG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	258, 321
PspXI	VCTCGAGB	1 cut(s)	311
PsuI	RGATCY	2 cut(s)	256, 319
PsyI	GACNNNGTC	1 cut(s)	250
PteI	GCGCGC	1 cut(s)	34
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SacI	GAGCTC	1 cut(s)	111
SalI	GTCGAC	1 cut(s)	68
SatI	GCNGC	2 cut(s)	198, 212
Sau3AI	GATC	2 cut(s)	256, 319
SchI	GAGTC	1 cut(s)	399
ScrFI	CCNGG	4 cut(s)	85, 193, 194, 221
SduI	GDGCHC	2 cut(s)	111, 165
SetI	ASST	9 cut(s)	111, 120, 240, 286, 312, 318, 337, 360, 435
Sfr274I	CTCGAG	1 cut(s)	311
SlaI	CTCGAG	1 cut(s)	311
SmaI	CCCGGG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SsiI	CCGC	6 cut(s)	5, 25, 63, 172, 197, 228
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	4 cut(s)	83, 191, 192, 219
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	2 cut(s)	69, 312
TauI	GCSGC	1 cut(s)	200
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	2 cut(s)	28, 284
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	2 cut(s)	28, 284
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	61
TspMI	CCCGGG	1 cut(s)	192
TspRI	CASTG	1 cut(s)	379
Tth111I	GACNNNGTC	1 cut(s)	250
XhoI	CTCGAG	1 cut(s)	311
XmaI	CCCGGG	1 cut(s)	192
XmiI	GTMKAC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.