MD05G1092000.v1.1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000541
Physical Location & Seq
Reverse (-)
19502734 .. 19505811
3078 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1092000.v1.1.491

Sequence Viewer

Length: 1197 bp
ATGGACGACAGCGCCACCACCAACACCAACCGCTCGTCTAATAAGCGATCCTCCTCCACGTCTCCGTCCTTGCAGATTCCTGCTCCCAAGAGGCGAGTCGTCCTGGGCGAACTCACCAACTTGCCGATTCAGGACTCGGATCGGAAGAAACCCAATAGGAACTGGATTAAGAGGAAGAGTAACATGATGAAGAAAGAAGAGGAGGAGGTCCATGAGACGGAGATTGTTTCCAGCTCTGTCGACCCAAGCAAGTCTGAGTTCTCATCTTCTATATATCGGCATCTTCACTCCTTGGAGATGGAGGCAAACAAGAGGCCGTCACCTAGTTACATGGGTAGGGTGCAAAATGATATTTCACCAAAAATGCGAGGAATTCTGGTGGATTGGTTGGTGGAGGTTGCAGAGGAATACAAGCTTGTTACAGACACCCTTTATCTCACTGTGTCGTATCTTGACAGATACCTTTCTTCATATGCTGTCAGCAGGAGCAAGCTACAGCTTCTTGGTGTTTCTTGCATGATTATTGCCTCAAAATATGAAGAGATTTGTCCTCCACATGTTGAGGACTTCTGCTATATAACTGATAATACCTACATCGTGGAAGAGGTGTTGGAAATGGAGAGGGATGTGGTCAAATTTTTGAACTCTGACACCGGACCTCCTACAACAAAGAATTTCCTCAGGCAAGATAATCTTTTGAAATACTATTTTGGTCATCTTACTCTTCACCAAAGCTGCCCAGGACAATTACAACGTAGGGCTATCATTTTCTACTGTTCTGATGCTGATTTGTACTCTCTTCTTTCTTTGTCTCTGATTCTGTTATTTTTCTGCCTTTTACAGTCTGTTGGTGTGTTCGAATACTTGAGTTGCTATCTTTCGGAGCTAAGTTTGTTAGACTACAGCTGTGTCCAGTTCCTACCATCAGTTGTTGCTGCATCAGCTATTTTCCTGTCGAGGTTCACGATCCAACCTGATGTGCATCCTTGGAGCTTGGCATTGCAGTCCTATTCCGGTTATAGACCATCCGACCTGAAAATGTGTGTCCTTGCCGTTCATGACTTGCAGTTGAACAGAAAACCAAGCTCTTTGCGAGCAATAAGAGAAAAATACATGAGGCCAAAGAATAAAAGCGTGGCCAAATTGTCTTCGCCCTCGGAAATTCCTGGAGCTTACTTTGAGGCCATCTACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

399

Amino Acids

45.48

Weight (kDa)

7.54

Isoelectric Point (pI)

63.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 92 - 217 3.2e-46 Cyclin, N-terminal domain
Cyclin_C PF02984 286 - 384 9.6e-28 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 33
AccI GTMKAC 1 cut(s) 240
AciI CCGC 1 cut(s) 31
AclWI GGATC 3 cut(s) 42, 147, 961
AcoI YGGCCR 1 cut(s) 1137
AcsI RAATTY 4 cut(s) 372, 635, 673, 1161
AfaI GTAC 1 cut(s) 794
AfiI CCNNNNNNNGG 1 cut(s) 217
AflIII ACRYGT 1 cut(s) 556
AgsI TTSAA 3 cut(s) 643, 700, 1072
AjiI CACGTC 1 cut(s) 60
AjnI CCWGG 3 cut(s) 102, 739, 1165
Alw26I GTCTC 3 cut(s) 66, 209, 816
AlwI GGATC 3 cut(s) 42, 147, 961
AoxI GGCC 4 cut(s) 314, 1118, 1137, 1182
ApeKI GCWGC 2 cut(s) 735, 935
ApoI RAATTY 4 cut(s) 372, 635, 673, 1161
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 2 cut(s) 208, 656
AsuHPI GGTGA 4 cut(s) 106, 312, 348, 719
AsuII TTCGAA 1 cut(s) 858
AvaII GGWCC 2 cut(s) 208, 656
AxyI CCTNAGG 1 cut(s) 680
BalI TGGCCA 1 cut(s) 1139
BbsI GAAGAC 1 cut(s) 1140
BbvI GCAGC 2 cut(s) 722, 922
BccI CCATC 4 cut(s) 292, 931, 1033, 1193
BceAI ACGGC 2 cut(s) 301, 1037
BciT130I CCWGG 3 cut(s) 104, 741, 1167
BcoDI GTCTC 3 cut(s) 66, 209, 816
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 2 cut(s) 494, 901
BfoI RGCGCY 1 cut(s) 15
BisI GCNGC 2 cut(s) 736, 936
BlsI GCNGC 2 cut(s) 737, 937
Bme1390I CCNGG 3 cut(s) 104, 741, 1167
Bme18I GGWCC 2 cut(s) 208, 656
BmgBI CACGTC 1 cut(s) 60
BmgT120I GGNCC 2 cut(s) 208, 656
BmrFI CCNGG 3 cut(s) 104, 741, 1167
BmsI GCATC 4 cut(s) 289, 772, 947, 991
BpiI GAAGAC 1 cut(s) 1140
BpmI CTGGAG 1 cut(s) 1188
Bpu14I TTCGAA 1 cut(s) 858
BpuEI CTTGAG 1 cut(s) 886
BsaBI GATNNNNATC 1 cut(s) 981
BsaJI CCNNGG 5 cut(s) 103, 291, 739, 986, 1155
BsaWI WCCGGW 2 cut(s) 653, 1013
BsaXI ACNNNNNCTCC 2 cut(s) 643, 673
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse1I ACTGG 2 cut(s) 167, 913
Bse21I CCTNAGG 1 cut(s) 680
Bse3DI GCAATG 1 cut(s) 998
Bse8I GATNNNNATC 1 cut(s) 981
BseBI CCWGG 3 cut(s) 104, 741, 1167
BseDI CCNNGG 5 cut(s) 103, 291, 739, 986, 1155
BseGI GGATG 3 cut(s) 631, 982, 1025
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMI GCAATG 1 cut(s) 998
BseMII CTCAG 2 cut(s) 246, 694
BseNI ACTGG 2 cut(s) 167, 913
BseRI GAGGAG 3 cut(s) 43, 215, 218
BseXI GCAGC 2 cut(s) 722, 922
BshFI GGCC 4 cut(s) 316, 1120, 1139, 1184
BsiSI CCGG 2 cut(s) 654, 1014
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 3 cut(s) 66, 209, 816
BsmBI CGTCTC 2 cut(s) 66, 209
BsnI GGCC 4 cut(s) 316, 1120, 1139, 1184
Bsp119I TTCGAA 1 cut(s) 858
Bsp143I GATC 3 cut(s) 47, 139, 966
BspACI CCGC 1 cut(s) 31
BspANI GGCC 4 cut(s) 316, 1120, 1139, 1184
BspCNI CTCAG 2 cut(s) 247, 693
BspHI TCATGA 1 cut(s) 1057
BspPI GGATC 3 cut(s) 42, 147, 961
BspT104I TTCGAA 1 cut(s) 858
BsrBI CCGCTC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 998
BsrI ACTGG 2 cut(s) 167, 913
BssECI CCNNGG 5 cut(s) 103, 291, 739, 986, 1155
BssMI GATC 3 cut(s) 47, 139, 966
BssT1I CCWWGG 2 cut(s) 291, 986
Bst2UI CCWGG 3 cut(s) 104, 741, 1167
Bst4CI ACNGT 3 cut(s) 442, 776, 843
Bst6I CTCTTC 6 cut(s) 170, 192, 534, 597, 729, 804
BstBI TTCGAA 1 cut(s) 858
BstC8I GCNNGC 2 cut(s) 491, 1095
BstDEI CTNAG 3 cut(s) 255, 680, 887
BstF5I GGATG 3 cut(s) 631, 982, 1025
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 3 cut(s) 50, 142, 969
BstMAI GTCTC 3 cut(s) 66, 209, 816
BstMBI GATC 3 cut(s) 47, 139, 966
BstMWI GCNNNNNNNGC 1 cut(s) 941
BstNI CCWGG 3 cut(s) 104, 741, 1167
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 3 cut(s) 102, 739, 1165
BstSFI CTRYAG 2 cut(s) 494, 901
BstV1I GCAGC 2 cut(s) 722, 922
BstV2I GAAGAC 1 cut(s) 1140
Bsu36I CCTNAGG 1 cut(s) 680
BsuRI GGCC 4 cut(s) 316, 1120, 1139, 1184
BtrI CACGTC 1 cut(s) 60
BtsCI GGATG 3 cut(s) 631, 982, 1025
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 2 cut(s) 491, 1095
CciI TCATGA 1 cut(s) 1057
CfoI GCGC 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 208, 656
Csp6I GTAC 1 cut(s) 793
CviAII CATG 8 cut(s) 184, 212, 331, 517, 557, 1058, 1114, 1194
CviQI GTAC 1 cut(s) 793
DdeI CTNAG 3 cut(s) 255, 680, 887
DpnI GATC 3 cut(s) 49, 141, 968
DpnII GATC 3 cut(s) 47, 139, 966
EaeI YGGCCR 1 cut(s) 1137
Eam1104I CTCTTC 6 cut(s) 170, 192, 534, 597, 729, 804
EarI CTCTTC 6 cut(s) 170, 192, 534, 597, 729, 804
Eco130I CCWWGG 2 cut(s) 291, 986
Eco47I GGWCC 2 cut(s) 208, 656
Eco81I CCTNAGG 1 cut(s) 680
EcoRI GAATTC 1 cut(s) 372
EcoRII CCWGG 3 cut(s) 102, 739, 1165
EcoT14I CCWWGG 2 cut(s) 291, 986
ErhI CCWWGG 2 cut(s) 291, 986
Esp3I CGTCTC 2 cut(s) 66, 209
FaeI CATG 8 cut(s) 187, 215, 334, 520, 560, 1061, 1117, 1197
FalI AAGNNNNNCTT 2 cut(s) 678, 710
FatI CATG 8 cut(s) 183, 211, 330, 516, 556, 1057, 1113, 1193
FauNDI CATATG 1 cut(s) 472
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 736, 936
FokI GGATG 3 cut(s) 638, 969, 1012
Fsp4HI GCNGC 2 cut(s) 736, 936
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 13
GluI GCNGC 2 cut(s) 736, 936
GsuI CTGGAG 1 cut(s) 1188
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 4 cut(s) 316, 1120, 1139, 1184
HapII CCGG 2 cut(s) 654, 1014
HhaI GCGC 1 cut(s) 14
Hin1II CATG 8 cut(s) 187, 215, 334, 520, 560, 1061, 1117, 1197
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 5 cut(s) 76, 96, 127, 134, 817
HpaII CCGG 2 cut(s) 654, 1014
HphI GGTGA 4 cut(s) 106, 312, 348, 719
Hpy166II GTNNAC 2 cut(s) 241, 963
Hpy188I TCNGA 9 cut(s) 139, 144, 256, 649, 781, 816, 883, 1030, 1159
Hpy188III TCNNGA 4 cut(s) 131, 452, 964, 1058
Hpy8I GTNNAC 2 cut(s) 241, 963
HpyCH4III ACNGT 3 cut(s) 442, 776, 843
HpyCH4IV ACGT 2 cut(s) 59, 754
HpyCH4V TGCA 8 cut(s) 73, 343, 401, 516, 938, 982, 1003, 1066
HpyF10VI GCNNNNNNNGC 1 cut(s) 941
HpyF3I CTNAG 3 cut(s) 255, 680, 887
HpySE526I ACGT 2 cut(s) 59, 754
Hsp92II CATG 8 cut(s) 187, 215, 334, 520, 560, 1061, 1117, 1197
HspAI GCGC 1 cut(s) 12
Kzo9I GATC 3 cut(s) 47, 139, 966
LmnI GCTCC 5 cut(s) 88, 486, 883, 990, 1169
Lsp1109I GCAGC 2 cut(s) 722, 922
LweI GCATC 4 cut(s) 289, 772, 947, 991
MaeI CTAG 1 cut(s) 324
MaeII ACGT 2 cut(s) 59, 754
MaeIII GTNAC 4 cut(s) 179, 318, 326, 418
MalI GATC 3 cut(s) 49, 141, 968
MbiI CCGCTC 1 cut(s) 33
MboI GATC 3 cut(s) 47, 139, 966
MlsI TGGCCA 1 cut(s) 1139
MluCI AATT 6 cut(s) 372, 635, 673, 746, 1142, 1161
MluNI TGGCCA 1 cut(s) 1139
MlyI GAGTC 2 cut(s) 105, 128
MmeI TCCRAC 3 cut(s) 591, 994, 1053
Mox20I TGGCCA 1 cut(s) 1139
MscI TGGCCA 1 cut(s) 1139
MseI TTAA 1 cut(s) 168
Msp20I TGGCCA 1 cut(s) 1139
MspA1I CMGCKG 1 cut(s) 906
MspI CCGG 2 cut(s) 654, 1014
MspR9I CCNGG 3 cut(s) 104, 741, 1167
MvaI CCWGG 3 cut(s) 104, 741, 1167
MwoI GCNNNNNNNGC 1 cut(s) 941
NdeI CATATG 1 cut(s) 472
NdeII GATC 3 cut(s) 47, 139, 966
NlaIII CATG 8 cut(s) 187, 215, 334, 520, 560, 1061, 1117, 1197
NmuCI GTSAC 1 cut(s) 318
NspI RCATGY 1 cut(s) 560
NspV TTCGAA 1 cut(s) 858
PagI TCATGA 1 cut(s) 1057
PciI ACATGT 1 cut(s) 556
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 962
PfeI GAWTC 3 cut(s) 76, 127, 817
PfoI TCCNGGA 1 cut(s) 1165
PkrI GCNGC 2 cut(s) 737, 937
PleI GAGTC 2 cut(s) 104, 128
PpsI GAGTC 2 cut(s) 104, 128
PscI ACATGT 1 cut(s) 556
Psp6I CCWGG 3 cut(s) 102, 739, 1165
PspGI CCWGG 3 cut(s) 102, 739, 1165
PspPI GGNCC 2 cut(s) 208, 656
PvuII CAGCTG 1 cut(s) 906
RsaI GTAC 1 cut(s) 794
RsaNI GTAC 1 cut(s) 793
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 2 cut(s) 736, 936
Sau3AI GATC 3 cut(s) 47, 139, 966
Sau96I GGNCC 2 cut(s) 208, 656
SchI GAGTC 2 cut(s) 105, 128
ScrFI CCNGG 3 cut(s) 104, 741, 1167
SfaNI GCATC 4 cut(s) 289, 772, 947, 991
SfcI CTRYAG 2 cut(s) 494, 901
SfuI TTCGAA 1 cut(s) 858
SinI GGWCC 2 cut(s) 208, 656
SmlI CTYRAG 1 cut(s) 865
SmoI CTYRAG 1 cut(s) 865
Sse9I AATT 6 cut(s) 372, 635, 673, 746, 1142, 1161
SsiI CCGC 1 cut(s) 31
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 3 cut(s) 102, 739, 1165
StyI CCWWGG 2 cut(s) 291, 986
TaaI ACNGT 3 cut(s) 442, 776, 843
TaiI ACGT 2 cut(s) 62, 757
TaqI TCGA 3 cut(s) 240, 858, 956
TasI AATT 6 cut(s) 372, 635, 673, 746, 1142, 1161
TatI WGTACW 1 cut(s) 792
TfiI GAWTC 3 cut(s) 76, 127, 817
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 1 cut(s) 318
TseI GCWGC 2 cut(s) 735, 935
Tsp45I GTSAC 1 cut(s) 318
TspDTI ATGAA 4 cut(s) 203, 459, 552, 1046
TspGWI ACGGA 2 cut(s) 54, 233
TspRI CASTG 1 cut(s) 445
VpaK11BI GGWCC 2 cut(s) 208, 656
XapI RAATTY 4 cut(s) 372, 635, 673, 1161
XceI RCATGY 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.