Rh3CG081000

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000541
Physical Location & Seq
Reverse (-)
6288969 .. 6292154
3186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG081000.1

Sequence Viewer

Length: 261 bp
ATGAGAAAGAGAAGAAGTCTTGAGCAGACAAGGTTGTCTCGATCTGGGTTGAGCAAGAAGAGGAGCAGAAGAAAAGAAACGCAGAGCTTGAGAAAATCTGAGATCAGGTTCATCTCGATCTGGTATCCAGCACTACAAGAATATACTGGTTATAAGGCAATGGATTTAAGAGTATGTGTTCTTATCATTCACGACTTGTTTTTGGGTAGACGTGGTGGATCTTTGGTAACTGTACGAGATAAATACAAACAGACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

86

Amino Acids

10.26

Weight (kDa)

11.16

Isoelectric Point (pI)

78.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_C PF02984 40 - 85 1.5e-07 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
AasI GACNNNNNNGTC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 208
AclWI GGATC 1 cut(s) 226
AfaI GTAC 1 cut(s) 234
AjiI CACGTC 1 cut(s) 212
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 226
BciVI GTATCC 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 42
BfuI GTATCC 1 cut(s) 135
BmgBI CACGTC 1 cut(s) 212
BpuEI CTTGAG 2 cut(s) 41, 109
Bse1I ACTGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 165
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 42
Bsp143I GATC 4 cut(s) 41, 102, 117, 218
BspCNI CTCAG 1 cut(s) 91
BspPI GGATC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 1 cut(s) 151
BssMI GATC 4 cut(s) 41, 102, 117, 218
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 99
BstKTI GATC 4 cut(s) 44, 105, 120, 221
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 4 cut(s) 41, 102, 117, 218
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BsuI GTATCC 1 cut(s) 135
BtrI CACGTC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 233
CviJI RGCY 1 cut(s) 87
CviKI_1 RGCY 1 cut(s) 87
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 1 cut(s) 99
DpnI GATC 4 cut(s) 43, 104, 119, 220
DpnII GATC 4 cut(s) 41, 102, 117, 218
DrdI GACNNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
FaiI YATR 3 cut(s) 144, 153, 175
FblI GTMKAC 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 4 cut(s) 20, 39, 115, 191
Hpy8I GTNNAC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 211
Kzo9I GATC 4 cut(s) 41, 102, 117, 218
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 5 cut(s) 30, 91, 106, 132, 141
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 226
MalI GATC 4 cut(s) 43, 104, 119, 220
MboI GATC 4 cut(s) 41, 102, 117, 218
MboII GAAGA 3 cut(s) 24, 70, 81
MflI RGATCY 1 cut(s) 218
MluCI AATT 1 cut(s) 256
MnlI CCTC 1 cut(s) 54
MseI TTAA 2 cut(s) 167, 259
NdeII GATC 4 cut(s) 41, 102, 117, 218
PsiI TTATAA 1 cut(s) 153
PsuI RGATCY 1 cut(s) 218
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
SaqAI TTAA 2 cut(s) 167, 259
Sau3AI GATC 4 cut(s) 41, 102, 117, 218
SetI ASST 4 cut(s) 35, 89, 110, 214
SmlI CTYRAG 2 cut(s) 20, 88
SmoI CTYRAG 2 cut(s) 20, 88
Sse9I AATT 1 cut(s) 256
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 1 cut(s) 214
TaqI TCGA 2 cut(s) 40, 116
TasI AATT 1 cut(s) 256
Tru1I TTAA 2 cut(s) 167, 259
Tru9I TTAA 2 cut(s) 167, 259
TspDTI ATGAA 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.