RchiOBHm_Chr6g0254451

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000541
Physical Location & Seq
Forward (+)
9514512 .. 9517371
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22825

Sequence Viewer

Length: 1065 bp
ATGTGCGACGAAGGAAACAGCGTCTACACCACGCGCTCGACGAAGAAGCGAGCCTCGGCGGCGGAGGCCCTGAAAGTTCCGGCGTCCAAGAAGCAGCGATCCGTACTGGGAGAGATCACCAACTCGCCGGATCTCGTTTCGGTTCCGAAATCGGCACCGAAGAAACCGAAAATTGAGTCGCAGAAGAAGGAAGAGGAGGAGGGACTCGAGACGGAGATTGGTGTGGGCTCGATTGATCCGGTCAAATGTGCTTACTCGCCTTCTATGTATAAGCATCTTCATATATTGGAGGTGGAGGTGAAGAATAGACCATTATGTGGTTACATGGAGAAGGTGCAGAATTGTATTTCAGAACACATGCGAGAAGTCCTGGTGGATTGGTTGGTGGAGGTTGCGGAGGAATACAAGTTTGTTTCAGACACCCTTTATCTTACCGTATCATATATTGACAGATACCTTTCTTCACACGTTATCAGCAAGAACAAGCTACAGCTTCTTGGTGTTGCGTGCATGTTTATTGCCTCGAAGTACGAAGAGATTTGTCCTCCACGTATTGAAGAGTTCTGCTATATAACAGATAATTCCTACATGATAGAAGAGGTGTTGGAAATGGAGAAAGATGTACTCAAATTCTTGAACTTTGAGATCTATACTCCCACAACAAGGAGTTTTCTCAGAATCTTCGCAAGAGCTGCTCAAGAGAATTCCAAATCTTTGGGTCTGCAGTTTGAATTCTTGGGTGGTTATCTTGCGGAACTAAGTTTGCTTGACTACTGCTGTGTTCGATTCCTACCATCAGTTATTGCTGCATCGGCGGTTTTTCTTACAAGGTTCACAATCCAGCCTGAGGTTCATCCCTGGAGCTGGAACTTGCAATGCTATTCTGGTTATAAACCATCTGATTTACAAGATTGTGTCCTTGCCCTTCATGACTTGCAGCTGAATAAAAGAGGAAGCAATTTGCGAGCGGTTAGAGATAAATATATGCAAGCAAAGTTTAAGTGCGTAGCAACATTGTCTTCACACTCTGAGATTCCTGCACTTTATTTTGAGGCCATCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

354

Amino Acids

40.34

Weight (kDa)

6.06

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 95 - 216 2.3e-45 Cyclin, N-terminal domain
Cyclin_C PF02984 219 - 340 2.3e-33 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 891
AccB1I GGYRCC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 317
AccBSI CCGCTC 1 cut(s) 968
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 34
AciI CCGC 6 cut(s) 59, 62, 395, 752, 815, 968
AclWI GGATC 3 cut(s) 93, 138, 230
AcsI RAATTY 3 cut(s) 629, 703, 731
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 3 cut(s) 105, 530, 624
AfiI CCNNNNNNNGG 4 cut(s) 317, 663, 847, 864
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 3 cut(s) 557, 637, 731
AjnI CCWGG 2 cut(s) 369, 857
AluBI AGCT 5 cut(s) 487, 493, 692, 864, 940
AluI AGCT 5 cut(s) 487, 493, 692, 864, 940
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 3 cut(s) 93, 138, 230
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 2 cut(s) 66, 1053
ApeKI GCWGC 4 cut(s) 94, 692, 806, 937
ApoI RAATTY 3 cut(s) 629, 703, 731
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 109, 310
AvaI CYCGRG 1 cut(s) 206
AxyI CCTNAGG 1 cut(s) 846
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 1011
BbvI GCAGC 4 cut(s) 106, 679, 793, 949
BccI CCATC 3 cut(s) 802, 904, 1064
BciT130I CCWGG 2 cut(s) 371, 859
BcoDI GTCTC 1 cut(s) 203
BfmI CTRYAG 2 cut(s) 488, 722
BglI GCCNNNNNGGC 1 cut(s) 59
BglII AGATCT 1 cut(s) 645
BisI GCNGC 5 cut(s) 60, 95, 693, 807, 938
BlsI GCNGC 5 cut(s) 61, 96, 694, 808, 939
Bme1390I CCNGG 2 cut(s) 371, 859
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 2 cut(s) 144, 156
BmrFI CCNGG 2 cut(s) 371, 859
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 2 cut(s) 283, 818
BmuI ACTGGG 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 1011
BpmI CTGGAG 1 cut(s) 880
BpuEI CTTGAG 1 cut(s) 681
BsaAI YACGTR 1 cut(s) 551
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 54, 857
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 4 cut(s) 317, 663, 847, 864
Bse1I ACTGG 1 cut(s) 111
Bse21I CCTNAGG 1 cut(s) 846
Bse3DI GCAATG 1 cut(s) 881
BseBI CCWGG 2 cut(s) 371, 859
BseDI CCNNGG 2 cut(s) 54, 857
BseGI GGATG 1 cut(s) 853
BseLI CCNNNNNNNGG 4 cut(s) 317, 663, 847, 864
BseMI GCAATG 1 cut(s) 881
BseMII CTCAG 3 cut(s) 688, 837, 1020
BseNI ACTGG 1 cut(s) 111
BseRI GAGGAG 2 cut(s) 209, 212
BseXI GCAGC 4 cut(s) 106, 679, 793, 949
BsgI GTGCAG 2 cut(s) 356, 1023
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 2 cut(s) 68, 1055
BshNI GGYRCC 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 3 cut(s) 80, 128, 239
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 4 cut(s) 317, 663, 847, 864
BsmAI GTCTC 1 cut(s) 203
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 2 cut(s) 68, 1055
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 5 cut(s) 98, 114, 130, 235, 645
BspACI CCGC 6 cut(s) 59, 62, 395, 752, 815, 968
BspANI GGCC 2 cut(s) 68, 1055
BspCNI CTCAG 3 cut(s) 687, 838, 1021
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 928
BspLI GGNNCC 2 cut(s) 144, 156
BspMAI CTGCAG 1 cut(s) 726
BspPI GGATC 3 cut(s) 93, 138, 230
BspT107I GGYRCC 1 cut(s) 154
BsrBI CCGCTC 1 cut(s) 968
BsrDI GCAATG 1 cut(s) 881
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 54, 857
BssMI GATC 5 cut(s) 98, 114, 130, 235, 645
BssNI GRCGYC 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 371, 859
Bst4CI ACNGT 1 cut(s) 436
Bst6I CTCTTC 4 cut(s) 186, 528, 552, 591
BstACI GRCGYC 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 692
BstBAI YACGTR 1 cut(s) 551
BstC8I GCNNGC 4 cut(s) 51, 508, 966, 990
BstDEI CTNAG 4 cut(s) 674, 758, 846, 1029
BstF5I GGATG 1 cut(s) 853
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 5 cut(s) 101, 117, 133, 238, 648
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 5 cut(s) 98, 114, 130, 235, 645
BstMWI GCNNNNNNNGC 4 cut(s) 59, 65, 692, 812
BstNI CCWGG 2 cut(s) 371, 859
BstNSI RCATGY 2 cut(s) 361, 514
BstSCI CCNGG 2 cut(s) 369, 857
BstSFI CTRYAG 2 cut(s) 488, 722
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 4 cut(s) 106, 679, 793, 949
BstV2I GAAGAC 1 cut(s) 1011
BstX2I RGATCY 2 cut(s) 130, 645
BstXI CCANNNNNNTGG 1 cut(s) 715
BstYI RGATCY 2 cut(s) 130, 645
Bsu36I CCTNAGG 1 cut(s) 846
BsuRI GGCC 2 cut(s) 68, 1055
BtsCI GGATG 1 cut(s) 853
Cac8I GCNNGC 4 cut(s) 51, 508, 966, 990
CciI TCATGA 1 cut(s) 928
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 67
CseI GACGC 2 cut(s) 10, 72
Csp6I GTAC 3 cut(s) 104, 529, 623
CviAII CATG 5 cut(s) 325, 358, 511, 589, 929
CviQI GTAC 3 cut(s) 104, 529, 623
DdeI CTNAG 4 cut(s) 674, 758, 846, 1029
DpnI GATC 5 cut(s) 100, 116, 132, 237, 647
DpnII GATC 5 cut(s) 98, 114, 130, 235, 645
Eam1104I CTCTTC 4 cut(s) 186, 528, 552, 591
EarI CTCTTC 4 cut(s) 186, 528, 552, 591
EciI GGCGGA 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 230
Eco81I CCTNAGG 1 cut(s) 846
Eco88I CYCGRG 1 cut(s) 206
EcoO109I RGGNCCY 1 cut(s) 67
EcoRI GAATTC 2 cut(s) 703, 731
EcoRII CCWGG 2 cut(s) 369, 857
EcoT38I GRGCYC 1 cut(s) 230
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 5 cut(s) 328, 361, 514, 592, 932
FaqI GGGAC 1 cut(s) 216
FatI CATG 5 cut(s) 324, 357, 510, 588, 928
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 5 cut(s) 60, 95, 693, 807, 938
FokI GGATG 1 cut(s) 840
FriOI GRGCYC 1 cut(s) 230
Fsp4HI GCNGC 5 cut(s) 60, 95, 693, 807, 938
GlaI GCGC 1 cut(s) 35
GluI GCNGC 5 cut(s) 60, 95, 693, 807, 938
GsuI CTGGAG 1 cut(s) 880
HaeIII GGCC 2 cut(s) 68, 1055
HapII CCGG 3 cut(s) 80, 128, 239
HgaI GACGC 2 cut(s) 10, 72
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 5 cut(s) 328, 361, 514, 592, 932
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 5 cut(s) 176, 204, 678, 786, 1033
HpaII CCGG 3 cut(s) 80, 128, 239
HphI GGTGA 2 cut(s) 109, 310
Hpy166II GTNNAC 2 cut(s) 25, 834
Hpy188I TCNGA 6 cut(s) 147, 352, 418, 677, 901, 1030
Hpy188III TCNNGA 4 cut(s) 208, 634, 698, 929
Hpy8I GTNNAC 2 cut(s) 25, 834
Hpy99I CGWCG 2 cut(s) 11, 43
HpyAV CCTTC 5 cut(s) 5, 181, 270, 325, 935
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4IV ACGT 2 cut(s) 468, 550
HpyCH4V TGCA 8 cut(s) 337, 510, 724, 809, 874, 937, 988, 1040
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 65, 692, 812
HpyF3I CTNAG 4 cut(s) 674, 758, 846, 1029
HpySE526I ACGT 2 cut(s) 468, 550
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 5 cut(s) 328, 361, 514, 592, 932
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 5 cut(s) 98, 114, 130, 235, 645
LmnI GCTCC 1 cut(s) 861
Lsp1109I GCAGC 4 cut(s) 106, 679, 793, 949
LweI GCATC 2 cut(s) 283, 818
MaeII ACGT 2 cut(s) 468, 550
MaeIII GTNAC 1 cut(s) 320
MalI GATC 5 cut(s) 100, 116, 132, 237, 647
MbiI CCGCTC 1 cut(s) 968
MboI GATC 5 cut(s) 98, 114, 130, 235, 645
MflI RGATCY 2 cut(s) 130, 645
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 7 cut(s) 171, 340, 580, 629, 703, 731, 958
MlyI GAGTC 2 cut(s) 185, 198
MmeI TCCRAC 1 cut(s) 585
MseI TTAA 1 cut(s) 999
MspA1I CMGCKG 1 cut(s) 940
MspI CCGG 3 cut(s) 80, 128, 239
MspR9I CCNGG 2 cut(s) 371, 859
MvaI CCWGG 2 cut(s) 371, 859
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 4 cut(s) 59, 65, 692, 812
NdeII GATC 5 cut(s) 98, 114, 130, 235, 645
NlaIII CATG 5 cut(s) 328, 361, 514, 592, 932
NlaIV GGNNCC 2 cut(s) 144, 156
NmeAIII GCCGAG 1 cut(s) 35
NspI RCATGY 2 cut(s) 361, 514
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 1 cut(s) 928
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PfeI GAWTC 3 cut(s) 678, 786, 1033
PflMI CCANNNNNTGG 1 cut(s) 317
PkrI GCNGC 5 cut(s) 61, 96, 694, 808, 939
PleI GAGTC 2 cut(s) 184, 198
PpsI GAGTC 2 cut(s) 184, 198
Ppu21I YACGTR 1 cut(s) 551
PsiI TTATAA 1 cut(s) 891
Psp6I CCWGG 2 cut(s) 369, 857
PspGI CCWGG 2 cut(s) 369, 857
PspN4I GGNNCC 2 cut(s) 144, 156
PspPI GGNCC 1 cut(s) 67
PstI CTGCAG 1 cut(s) 726
PsuI RGATCY 2 cut(s) 130, 645
PvuII CAGCTG 1 cut(s) 940
RsaI GTAC 3 cut(s) 105, 530, 624
RsaNI GTAC 3 cut(s) 104, 529, 623
SaqAI TTAA 1 cut(s) 999
SatI GCNGC 5 cut(s) 60, 95, 693, 807, 938
Sau3AI GATC 5 cut(s) 98, 114, 130, 235, 645
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 2 cut(s) 185, 198
ScrFI CCNGG 2 cut(s) 371, 859
SduI GDGCHC 1 cut(s) 230
SfaNI GCATC 2 cut(s) 283, 818
SfcI CTRYAG 2 cut(s) 488, 722
Sfr274I CTCGAG 1 cut(s) 206
SlaI CTCGAG 1 cut(s) 206
SmlI CTYRAG 2 cut(s) 206, 696
SmoI CTYRAG 2 cut(s) 206, 696
Sse9I AATT 7 cut(s) 171, 340, 580, 629, 703, 731, 958
SsiI CCGC 6 cut(s) 59, 62, 395, 752, 815, 968
StyD4I CCNGG 2 cut(s) 369, 857
TaaI ACNGT 1 cut(s) 436
TaiI ACGT 2 cut(s) 471, 553
TaqI TCGA 5 cut(s) 38, 207, 230, 524, 784
TasI AATT 7 cut(s) 171, 340, 580, 629, 703, 731, 958
TatI WGTACW 1 cut(s) 622
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 3 cut(s) 678, 786, 1033
Tru1I TTAA 1 cut(s) 999
Tru9I TTAA 1 cut(s) 999
TseI GCWGC 4 cut(s) 94, 692, 806, 937
TspDTI ATGAA 3 cut(s) 269, 842, 917
TspGWI ACGGA 2 cut(s) 91, 227
Van91I CCANNNNNTGG 1 cut(s) 317
XapI RAATTY 3 cut(s) 629, 703, 731
XceI RCATGY 2 cut(s) 361, 514
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.